Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398629.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1915.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2275
ACGTcount: A:0.12, C:0.04, G:0.07, T:0.09

Warning! 1538 characters in sequence are not A, C, G, or T


Found at i:2192 original size:15 final size:15

Alignment explanation


    Indices: 2172--2227  Score: 62
    Period size: 15  Copynumber: 3.8  Consensus size: 15

       2162 CTTGGAAGCA

                  *        
       2172 AAAGGAAAAAGGAAG
          1 AAAGGAGAAAGGAAG

                           
       2187 AAAGGAGAAA-GAAG
          1 AAAGGAGAAAGGAAG

               *           
       2201 AAAAGAGAAAGG-AG
          1 AAAGGAGAAAGGAAG

                 *       
       2215 TAAAGCAGAAAGG
          1 -AAAGGAGAAAGG

       2228 GAGTTTCGGC


Statistics
Matches: 35,  Mismatches: 4, Indels: 4
        0.81            0.09        0.09

Matches are distributed among these distances:
  14   15  0.43
  15   20  0.57

ACGTcount: A:0.62, C:0.02, G:0.34, T:0.02


Consensus pattern (15 bp):   
AAAGGAGAAAGGAAG

Found at i:2210 original size:21 final size:22

Alignment explanation


    Indices: 2185--2225  Score: 66
    Period size: 21  Copynumber: 1.9  Consensus size: 22

       2175 GGAAAAAGGA

                                  
       2185 AGAAAGGAG-AAAGAAGAAAAG
          1 AGAAAGGAGTAAAGAAGAAAAG

                          *     
       2206 AGAAAGGAGTAAAGCAGAAA
          1 AGAAAGGAGTAAAGAAGAAA

       2226 GGGAGTTTCG


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  21    9  0.50
  22    9  0.50

ACGTcount: A:0.63, C:0.02, G:0.32, T:0.02


Consensus pattern (22 bp):   
AGAAAGGAGTAAAGAAGAAAAG

Done.