Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018398639.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1925.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9819
ACGTcount: A:0.30, C:0.10, G:0.11, T:0.28
Warning! 2139 characters in sequence are not A, C, G, or T
Found at i:2559 original size:169 final size:170
Alignment explanation
Indices: 2361--2710 Score: 421
Period size: 169 Copynumber: 2.1 Consensus size: 170
2351 NNNNNNNNTA
*
2361 AGGCTTTCGAAGGCATGGGTGACTATAAATGGA-TTATTATTGCCAATGAATGACCTTTGT-T-C
1 AGGCTTTCGAAGGCATGGATGACTATAAATGGACTT-TTATTGCCAATGAAT-ACCTTTGTCTGC
* *
2423 AAGTTTCTTAAGGTAGAC-TGTTAATTATAATTTGTTTTAACTAA-AAATGAAAAAAAATTCAAC
64 AAGTTTCTTAAGGTAGACAT-TCAATTATAATATGTTTTAA-TAAGAAAT-AAAAAAAATTCAAC
* * *
2486 TT-AAAGTCAATTATGAGTTTA-CAAAACCATTTAAAGCGACGAACC
126 TTCAAA-TCAATTATCAGATTATC-AAACCATATAAAGCGACGAACC
* * * * *
2531 AGGCTTTTGAAGGTATGGAT-ACTATAAATGGACTTTTCTTGCCAATGAATATCTTTTTCTGCAA
1 AGGCTTTCGAAGGCATGGATGACTATAAATGGACTTTTATTGCCAATGAATACCTTTGTCTGCAA
* *
2595 GTTTCTTGAGGTAGACATTCAATTATAATATGTTTTAATAAGAAATAAAAAAAATTGAACTTCAA
66 GTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAATAAGAAATAAAAAAAATTCAACTTCAA
* **
2660 ATCAGTTATCAGATTATCAAACCATATAAAGCGA-GTAATA
131 ATCAATTATCAGATTATCAAACCATATAAAGCGACG-AACC
2700 AGGCTTTCGAA
1 AGGCTTTCGAA
2711 NNNNNNNNNN
Statistics
Matches: 155, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
168 7 0.05
169 84 0.54
170 63 0.41
171 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.34
Consensus pattern (170 bp):
AGGCTTTCGAAGGCATGGATGACTATAAATGGACTTTTATTGCCAATGAATACCTTTGTCTGCAA
GTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAATAAGAAATAAAAAAAATTCAACTTCAA
ATCAATTATCAGATTATCAAACCATATAAAGCGACGAACC
Found at i:2704 original size:339 final size:340
Alignment explanation
Indices: 2029--2710 Score: 737
Period size: 339 Copynumber: 2.0 Consensus size: 340
2019 NNNNNNTTTT
* * * * *
2029 GAAGGCATGGGTGACTATAAATGGACTTTTCTTGCTAATGAATGGCTTTTACTTCACATTTCTCG
1 GAAGGCATGGGTGACTATAAATGGACTTTTATTGCCAATGAATGACCTTTACTTCACATTTCTCA
* ********
2094 AGGTAAAAATTTAATTATAATCTGTTTTAACTAAAAATGAAAACAATTCAACTTAAANNNNNNNN
66 AGGTAAAAATTTAATTATAATCTGTTTTAACTAAAAATGAAAAAAATTCAACTTAAAGTCAATTA
** * * * *
2159 NNAGTTTATAAAACCATTTAAAGCGAGTAATAAGACTTTTGAAGGAATAAGCGACTATAAGTGGA
131 TGAGTTTACAAAACCATTTAAAGCGAGTAACAAGACTTTTGAAGGAATAAGAGACTATAAATGGA
* * * * *
2224 CTATTCTTGCCAACGAATATCTTTTTCTTCATGTGTCTCAAGGTGGACATTTAATTATAATCTAT
196 CTATTCTTGCCAACGAATATCTTTTTCTGCAAGTGTCTCAAGGTAGACATTCAATTATAATATAT
* * * * *****
2289 TTGAATAAAAAATTAAAAAAATTCAACATGAAATCAGTTATCACATTATCAAATCATTTANNNNN
261 TTGAATAAAAAATAAAAAAAATTCAACATCAAATCAGTTATCACATTATCAAACCATATAAAGCG
*****
2354 NNNNNTAAGGCTTTC
326 AGTAATAAGGCTTTC
*
2369 GAAGGCATGGGTGACTATAAATGGA-TTATTATTGCCAATGAATGACCTTT-GTTCA-AGTTTCT
1 GAAGGCATGGGTGACTATAAATGGACTT-TTATTGCCAATGAATGACCTTTACTTCACA-TTTCT
* * * *
2431 TAAGGT-AGACTGTTAATTATAATTTGTTTTAACTAAAAATGAAAAAAAATTCAACTTAAAGTCA
64 CAAGGTAAAAAT-TTAATTATAATCTGTTTTAACTAAAAATG-AAAAAAATTCAACTTAAAGTCA
* * * * *
2495 ATTATGAGTTTACAAAACCATTTAAAGCGACG-AACCAGGCTTTTGAAGGTAT-GGATACTATAA
127 ATTATGAGTTTACAAAACCATTTAAAGCGA-GTAACAAGACTTTTGAAGGAATAAGAGACTATAA
* * * **
2558 ATGGACTTTTCTTGCCAATGAATATCTTTTTCTGCAAGTTTCTTGAGGTAGACATTCAATTATAA
191 ATGGACTATTCTTGCCAACGAATATCTTTTTCTGCAAGTGTCTCAAGGTAGACATTCAATTATAA
* * * * * *
2623 TATGTTTTAATAAGAAATAAAAAAAATTGAACTTCAAATCAGTTATCAGATTATCAAACCATATA
256 TATATTTGAATAAAAAATAAAAAAAATTCAACATCAAATCAGTTATCACATTATCAAACCATATA
2688 AAGCGAGTAATAAGGCTTTC
321 AAGCGAGTAATAAGGCTTTC
2708 GAA
1 GAA
2711 NNNNNNNNNN
Statistics
Matches: 277, Mismatches: 60, Indels: 11
0.80 0.17 0.03
Matches are distributed among these distances:
338 4 0.01
339 173 0.62
340 99 0.36
341 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.33
Consensus pattern (340 bp):
GAAGGCATGGGTGACTATAAATGGACTTTTATTGCCAATGAATGACCTTTACTTCACATTTCTCA
AGGTAAAAATTTAATTATAATCTGTTTTAACTAAAAATGAAAAAAATTCAACTTAAAGTCAATTA
TGAGTTTACAAAACCATTTAAAGCGAGTAACAAGACTTTTGAAGGAATAAGAGACTATAAATGGA
CTATTCTTGCCAACGAATATCTTTTTCTGCAAGTGTCTCAAGGTAGACATTCAATTATAATATAT
TTGAATAAAAAATAAAAAAAATTCAACATCAAATCAGTTATCACATTATCAAACCATATAAAGCG
AGTAATAAGGCTTTC
Found at i:3332 original size:171 final size:170
Alignment explanation
Indices: 2889--3771 Score: 420
Period size: 171 Copynumber: 5.2 Consensus size: 170
2879 NNNNNNNNAT
* * * * * * *
2889 AGTCAATTATGAGTTTACAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAA-GTATGTGTGAC
1 AGTCAATTAAGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT-AAAGGCA-GAGTGA-
* * * * * * * ** *
2953 TATAAATGAACTTTGCTTGCAAATGAATATCTTTTTCTTCATGTTTCTTGAGGTAGGCATTCAAT
63 TATGAATGGACTTTTCTTGCCAATGAATATCTTTTTCTTCAAGTTTCTTTAGGTAGACAACCAAA
* * * * * *
3018 TATATTTTGTTTTAATAGAAAATGTAAAAAAATTCAAATTCAA
128 TATAATATGTTTGAACAGAAAATATAAAAAAACTCAAATTCAA
* * * * * * * *
3061 A-TTAATAAAGAGATTTTAAAACCATTTAAAGCGAGTATTAAGGCTTTTGAAGGCTTGAGAGACA
1 AGTCAATTAAGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGC-AGAGTGATA
* * *** * * *
3125 AGAAATAGG-CTTCTCTTGCCAATGAATGGGTTTTTCTTTAAGCTTCTTTAGGCAGACAACCAAA
65 TG-AAT-GGACTTTTCTTGCCAATGAATATCTTTTTCTTCAAGTTTCTTTAGGTAGACAACCAAA
* *
3189 TGTAATATGTTTGAAGCA-AAAATATAAAAAAACTCAACTT-AA
128 TATAATATGTTTGAA-CAGAAAATATAAAAAAACTCAAATTCAA
* *
3231 AGTCAATTACGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTTAAAGGCAGAGGTGAGT
1 AGTCAATTAAGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCAGA-GTGA-T
* *** *
3296 ATGAATGGACTTTTCTTGCCAATGAATATCTTTTTCTTCACGTTTCTTTAGGTAGACATTTAATT
64 ATGAATGGACTTTTCTTGCCAATGAATATCTTTTTCTTCAAGTTTCTTTAGGTAGACAACCAAAT
* * * * * **
3361 ACAAT-TAATTT-AAAATAAAA-ATAACAAAAATTCAACCT-AA
129 ATAATAT-GTTTGAACAGAAAATATAA-AAAAACTCAAATTCAA
* * ********** * ** *
3401 AGTCAATTATGAGATTATAAAATCNNNNNNNNNNAGTAATAAGTCTTTCGAAGGCATAGGTGACT
1 AGTCAATTAAGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCAGA-GTGA-T
** * * *** * * **
3466 AT-AGATAGG-CATTTT-TTATCAATAAATATCTTTTTCTTCATGTTTCCAAAGATAAACATTCA
64 ATGA-AT-GGAC-TTTTCTTGCCAATGAATATCTTTTTCTTCAAGTTTCTTTAGGTAGACAACCA
* * * * * * *
3528 ATTATAATCTGTTTTAACAAAAAATATAAAAAAAAT-AATTTTAA
126 AATATAATATGTTTGAACAGAAAATATAAAAAAACTCAAATTCAA
* * * ** *
3572 A-TTAATTATA-AGATTATTAAACCATTTAAAGCGAGTAATAAAGCTTTCGAAGGCATGGGTGAC
1 AGTCAATTA-AGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCA-GAGTGA-
* * * ** ** * **
3635 TATAAATGG-CCTTTCTTGCTAATGAATGGCTTTTTCTTCAAGTTTCTCGAGGTA-AAAATTTAA
63 TATGAATGGACTTTTCTTGCCAATGAATATCTTTTTCTTCAAGTTTCTTTAGGTAGACAA-CCAA
* * * * * *
3698 TTATAATATATTTTAACTA-AAAAT-GAAAAAAATTCAACTT-AA
127 ATATAATATGTTTGAAC-AGAAAATATAAAAAAACTCAAATTCAA
* *
3740 AGTCAATTATGAGCTTATAAAACCATTTAAAG
1 AGTCAATTAAGAGATTATAAAACCATTTAAAG
3772 NNNNNNNNNN
Statistics
Matches: 537, Mismatches: 146, Indels: 59
0.72 0.20 0.08
Matches are distributed among these distances:
168 16 0.03
169 89 0.17
170 181 0.34
171 242 0.45
172 9 0.02
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.34
Consensus pattern (170 bp):
AGTCAATTAAGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCAGAGTGATAT
GAATGGACTTTTCTTGCCAATGAATATCTTTTTCTTCAAGTTTCTTTAGGTAGACAACCAAATAT
AATATGTTTGAACAGAAAATATAAAAAAACTCAAATTCAA
Found at i:5829 original size:338 final size:335
Alignment explanation
Indices: 5451--6170 Score: 734
Period size: 338 Copynumber: 2.1 Consensus size: 335
5441 NNNNNNNNNN
* ** * * *
5451 ATTCAACTTAAAGTCAATTATGAGAATATAAAATCATTTAAACCCA-GTAATAAGACCTTTGAAG
1 ATTCAACTTAATGTCAATTATGAGTTTACAAAACCATTTAAACCCACG-AACAAGACCTTTGAAG
* * *
5515 GAATAGACGACTATAAATGGACTATTCTTGCCAATGAATATTTTTTTCTTCATGTGTCTCAAGGT
65 GAATAGACGACTATAAATGGACTATTCTTGCCAATGAATATCTTGTTCTTCATATGTCTCAAGGT
* ** * *
5580 CGACATTCAATTATAATCTGTTTGAATAAAAAATAAAAATTATTTAACTTGAAATCCA-TTATCA
130 AGACATTCAATTATAATCTGTTTGAATAAAAAATAAAAAAAATTAAACTTCAAAT-CAGTTATCA
* * * ***** *
5644 GATTATCATATCATTTAAAGCGAGTAATAAGNNNNNNNNNNGCATAGGTGACTATAAATGGACTA
194 GATTACCAAAACATTTAAAGCGAGTAATAAG-----GCTTTGCATAGGCGACTATAAATGGACTA
* *
5709 TTATTGCCAATGAATGAC-TTTT-TTCA-TGTTTCTCAAGGTAGACTATTAATTATAATCCGTTT
254 TTATTGCCAATCAATGACTTTTTCTTCACT-TTTCTCAAGGTAGACCATTAATTATAATCCGTTT
5771 TAACAAAAAATGAAAAA-A
318 TAACAAAAAAT-AAAAACA
* * * *
5789 ATTCAACTTAATGTCAATTATGAGTTTACAAAACCATTTAAAGCGACGAACAAGGCTTTTGAAGG
1 ATTCAACTTAATGTCAATTATGAGTTTACAAAACCATTTAAACCCACGAACAAGACCTTTGAAGG
* * ********** * * **
5854 TATGGANNNNNNNNNNTGGACTTTTCTTGCCAATGAATATCTTGTTCTTCATATTTCTTGAGGTA
66 AATAGACGACTATAAATGGACTATTCTTGCCAATGAATATCTTGTTCTTCATATGTCTCAAGGTA
* * *
5919 GACATTCAATTATAATCTGTTTTAATAAGAAATAAAAAAAATTAAACTTCAAATCAGTTATGAGA
131 GACATTCAATTATAATCTGTTTGAATAAAAAATAAAAAAAATTAAACTTCAAATCAGTTATCAGA
***** *
5984 TTACCAAAACATTTAAAGCGAGTAATAAGGCTTTNNNNNNNNNNGGCGACTATAAATGGACTTTT
196 TTACCAAAACATTTAAAGCGAGTAATAAGGCTTT-----GCATAGGCGACTATAAATGGACTATT
* * * *
6049 CTTGCCAATCAATGACTTTTTCTTCACTTTTCTCAAGGTTGACCGTTAATTATAATCTGTTTTAA
256 ATTGCCAATCAATGACTTTTTCTTCACTTTTCTCAAGGTAGACCATTAATTATAATCCGTTTTAA
6114 CAAAAAATAAAAACA
321 CAAAAAATAAAAACA
6129 ATTCAACTT-ATAGTCAATTATGAGTTTACAAAACCATTTAAA
1 ATTCAACTTAAT-GTCAATTATGAGTTTACAAAACCATTTAAA
6171 TTGTGTAACA
Statistics
Matches: 312, Mismatches: 58, Indels: 22
0.80 0.15 0.06
Matches are distributed among these distances:
337 2 0.01
338 212 0.68
339 12 0.04
340 85 0.27
341 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.33
Consensus pattern (335 bp):
ATTCAACTTAATGTCAATTATGAGTTTACAAAACCATTTAAACCCACGAACAAGACCTTTGAAGG
AATAGACGACTATAAATGGACTATTCTTGCCAATGAATATCTTGTTCTTCATATGTCTCAAGGTA
GACATTCAATTATAATCTGTTTGAATAAAAAATAAAAAAAATTAAACTTCAAATCAGTTATCAGA
TTACCAAAACATTTAAAGCGAGTAATAAGGCTTTGCATAGGCGACTATAAATGGACTATTATTGC
CAATCAATGACTTTTTCTTCACTTTTCTCAAGGTAGACCATTAATTATAATCCGTTTTAACAAAA
AATAAAAACA
Found at i:6207 original size:170 final size:169
Alignment explanation
Indices: 4800--6228 Score: 947
Period size: 170 Copynumber: 8.4 Consensus size: 169
4790 AAGAGATTTT
* * * * * *
4800 AAAACCATTTAAAGCGAGTATTAAGGCTTTCGAAGGCTTGAGTGACCATAAATAGG-CTTCTCTT
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGGGTGACTATAAAT-GGACTTTTCTT
*** * * * ** * * ** * * * *
4864 GCCAATGAATGGATTTTTCTTTAAGCTTCTTTAGGCAGACAACCAAATGTAATATGTTTGAAGC-
65 GCCAATGAATATCTTTTTCTTCATGTTTCTCAAGGTAGACCATTAATTATAATCTGTTTTAA-CA
* * *
4928 AAAAATATAAAAAAACTCAACTTAAAGTCAATTACGAGATTAT
129 AAAAATA-AAAAAAATTCAACTT-AAGTCAATTATGAGATTAC
* * *
4971 AAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAGGCA-GAGGTGAGTATGAATGGACTTTTCTT
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATG-GGTGACTATAAATGGACTTTTCTT
* ** ** ** *
5035 GCCAATGAATATCTTTTTCTTCACGTTTCTTTATATAGA-CATTTAATTATAAT-TAATTTAAAA
65 GCCAATGAATATCTTTTTCTTCATGTTTCTCAAGGTAGACCA-TTAATTATAATCTGTTTTAACA
* *
5098 CAAAAATAAAAAAAATTCAACCTAAAGTCAATTATGAGATTAT
129 -AAAAATAAAAAAAATTCAA-CTTAAGTCAATTATGAGATTAC
* * * * * * *
5141 AAAATCAATTAAAGTGAGTAATAAGTCTTTTGAAGGCATAGGTGACTATAGATAGACATTTT-TT
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGGGTGACTATAAATGGAC-TTTTCTT
** * * *
5205 ATCAATAAATATCTTTTTCTTCATGTTTC-CAGAGGTA-AACATTCAATTATAATCTGTTCTAAC
65 GCCAATGAATATCTTTTTCTTCATGTTTCTCA-AGGTAGACCATT-AATTATAATCTGTTTTAAC
* * * *
5268 AAAAAATATAAAAAAATTCAATCTCAAATTAATTATGAGATTAT
128 AAAAAATA-AAAAAAATTCAA-CTTAAGTCAATTATGAGATTAC
* ********** *
5312 TAAACCATTNNNNNNNNNNAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTG
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGGGTGACTATAAATGGACTTTTCTTG
* * * ** * *
5377 CTAAT-AAT-TGTTTTTCTTCACGTTTCTTGAGGTA-ACAAATTAATTATAATCTGTTTTAACTA
66 CCAATGAATATCTTTTTCTTCATGTTTCTCAAGGTAGAC-CATTAATTATAATCTGTTTTAACAA
********** * *
5439 AANNNNNNNNNNATTCAACTTAAAGTCAATTATGAGAATAT
130 AAAATAAAAAAAATTCAACTT-AAGTCAATTATGAGATTAC
* * * * * * * ** *
5480 AAAATCATTTAAACCCAGTAATAAGACCTTTGAAGGAATAGACGACTATAAATGGACTATTCTTG
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGGGTGACTATAAATGGACTTTTCTTG
* * * * *
5545 CCAATGAATATTTTTTTCTTCATGTGTCTCAAGGTCGA-CATTCAATTATAATCTGTTTGAATAA
66 CCAATGAATATCTTTTTCTTCATGTTTCTCAAGGTAGACCATT-AATTATAATCTGTTTTAACAA
** * * * *
5609 AAAATAAAAATTATTTAACTTGAAATCCATTATCAGATTATC
130 AAAATAAAAAAAATTCAACTT-AAGTCAATTATGAGATTA-C
* * ********** * * *
5651 -ATATCATTTAAAGCGAGTAATAAGNNNNNNNNNNGCATAGGTGACTATAAATGGACTATTATTG
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGGGTGACTATAAATGGACTTTTCTTG
* *
5715 CCAATGAATGA-C-TTTT-TTCATGTTTCTCAAGGTAGACTATTAATTATAATCCGTTTTAACAA
66 CCAATGAAT-ATCTTTTTCTTCATGTTTCTCAAGGTAGACCATTAATTATAATCTGTTTTAACAA
* *
5777 AAAATGAAAAAAATTCAACTTAATGTCAATTATGAGTTTAC
130 AAAATAAAAAAAATTCAACTTAA-GTCAATTATGAGATTAC
* * ***********
5818 AAAACCATTTAAAGCGACG-AACAAGGCTTTTGAAGGTATGGANNNNNNNNNNTGGACTTTTCTT
1 AAAACCATTTAAAGCGA-GTAATAAGGCTTTTGAAGGCATGGGTGACTATAAATGGACTTTTCTT
* * ** *
5882 GCCAATGAATATCTTGTTCTTCATATTTCTTGAGGTAGA-CATTCAATTATAATCTGTTTTAATA
65 GCCAATGAATATCTTTTTCTTCATGTTTCTCAAGGTAGACCATT-AATTATAATCTGTTTTAACA
* * * *
5946 AGAAATAAAAAAAATTAAACTTCAAATCAGTTATGAGATTACC
129 AAAAATAAAAAAAATTCAACTT-AAGTCAATTATGAGATTA-C
********** *
5989 AAAA-CATTTAAAGCGAGTAATAAGGCTTTNNNNNNNNNNGGCGACTATAAATGGACTTTTCTTG
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGGGTGACTATAAATGGACTTTTCTTG
* * *
6053 CCAATCAATGA-CTTTTTCTTCACT-TTTCTCAAGGTTGACCGTTAATTATAATCTGTTTTAACA
66 CCAATGAAT-ATCTTTTTCTTCA-TGTTTCTCAAGGTAGACCATTAATTATAATCTGTTTTAACA
* *
6116 AAAAATAAAAACAATTCAACTTATAGTCAATTATGAGTTTAC
129 AAAAATAAAAAAAATTCAACTTA-AGTCAATTATGAGATTAC
** * * * *
6158 AAAACCATTTAAATTGTGTAACAAGGCTTTTGAAGGTATGGGTGACTATAAATGAACTTTTCTTG
1 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGGGTGACTATAAATGGACTTTTCTTG
6223 CCAATG
66 CCAATG
6229 NNNNNNNNNN
Statistics
Matches: 947, Mismatches: 272, Indels: 79
0.73 0.21 0.06
Matches are distributed among these distances:
167 6 0.01
168 180 0.19
169 73 0.08
170 493 0.52
171 195 0.21
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.34
Consensus pattern (169 bp):
AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGGGTGACTATAAATGGACTTTTCTTG
CCAATGAATATCTTTTTCTTCATGTTTCTCAAGGTAGACCATTAATTATAATCTGTTTTAACAAA
AAATAAAAAAAATTCAACTTAAGTCAATTATGAGATTAC
Found at i:7186 original size:169 final size:169
Alignment explanation
Indices: 6825--7360 Score: 492
Period size: 171 Copynumber: 3.1 Consensus size: 169
6815 NNNNNNNNNT
* * * * * * **
6825 CATTTAAAGTGAGTAATAAGTCTTTCGAAGGCATAGGTGACTATAGAT-AGAC-ATTTTTTATCA
1 CATTTAAAGCGAGTAATAAGGCTTTCAAAGACATAGGTGACTATAAATGA-ACTATTCTTGCT-A
* * * * * * * * * *
6888 ATAAATATCTTTTTCTTT-AGGTTTC-CAGAGGTAGACATTCAATAATAATATGTTTTAACAAAA
64 ATGAATATC-TTTTCTTTCACGTTGCTCA-AGGGACAAATTCAATTATAATCTATTTTAACTAAA
* * * *
6951 AATATAAAAAAATTCAATTTTAAATTAATTATGAGATTATTAAAC
127 AAT-GAAAAAAATTCAA-ATTAAATCAATTATGAGATTATAAAAC
* *
6996 CATTTAAAGCGAGTAATAAGGCTTTCGAAGACATAGGTGACTATAAATGAACTTTTCTTGCTAAT
1 CATTTAAAGCGAGTAATAAGGCTTTCAAAGACATAGGTGACTATAAATGAACTATTCTTGCTAAT
* * *
7061 GAAT-TGCTTTTCTTT-ACGTTGCTCGAGGTACAAATTTAATTATAATCTATTTTAACTAAAAAT
66 GAATAT-CTTTTCTTTCACGTTGCTCAAGGGACAAATTCAATTATAATCTATTTTAACTAAAAAT
* * *
7124 GAAAAAAATTCAACTTAAAGTCAATTATAAGCTTATAAAAC
130 GAAAAAAATTCAAATTAAA-TCAATTATGAGATTATAAAAC
* * * * ** * * *
7165 AATTTAAATCGACTAATAAGGCTTTTAAAGGTATGGGTGACTATAAATGGACTATTCTTGCTGAT
1 CATTTAAAGCGAGTAATAAGGCTTTCAAAGACATAGGTGACTATAAATGAACTATTCTTGCTAAT
* * * * * *
7230 GAATATCTTTTTTTTCATGTTTCTCAAGGGAGACATTCAATTATAATCTGTTTTAA-TAAAATAT
66 GAATATCTTTTCTTTCACGTTGCTCAAGGGACAAATTCAATTATAATCTATTTTAACTAAAA-AT
* *
7294 GTTAAAAAATTCAAATTCAAATCAATTATGAGATTATCAAAC
130 G-AAAAAAATTCAAATT-AAATCAATTATGAGATTATAAAAC
*
7336 CATTTAAAGCGAGTAATAAGACTTT
1 CATTTAAAGCGAGTAATAAGGCTTT
7361 AAAAAATTTT
Statistics
Matches: 301, Mismatches: 54, Indels: 20
0.80 0.14 0.05
Matches are distributed among these distances:
168 5 0.02
169 100 0.33
170 81 0.27
171 106 0.35
172 9 0.03
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (169 bp):
CATTTAAAGCGAGTAATAAGGCTTTCAAAGACATAGGTGACTATAAATGAACTATTCTTGCTAAT
GAATATCTTTTCTTTCACGTTGCTCAAGGGACAAATTCAATTATAATCTATTTTAACTAAAAATG
AAAAAAATTCAAATTAAATCAATTATGAGATTATAAAAC
Found at i:7393 original size:65 final size:64
Alignment explanation
Indices: 7295--7425 Score: 190
Period size: 65 Copynumber: 2.0 Consensus size: 64
7285 ATAAAATATG
* * *
7295 TTAAAAAATTCAAATTCAAATCAATTATGAGATTATCAAACCATTTAAAGCGAGTAATAAGACT
1 TTAAAAAATTCAAACTCAAATCAATTATAAGATTATAAAACCATTTAAAGCGAGTAATAAGACT
** * *
7359 TTAAAAAATTTTAACTCAAAGTCAATTATAAGATTATAAAACCATTTAAAGTGAGTAATAAGTCT
1 TTAAAAAATTCAAACTCAAA-TCAATTATAAGATTATAAAACCATTTAAAGCGAGTAATAAGACT
7424 TT
1 TT
7426 CGAAGGCATG
Statistics
Matches: 59, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
64 17 0.29
65 42 0.71
ACGTcount: A:0.47, C:0.11, G:0.09, T:0.33
Consensus pattern (64 bp):
TTAAAAAATTCAAACTCAAATCAATTATAAGATTATAAAACCATTTAAAGCGAGTAATAAGACT
Found at i:7789 original size:170 final size:170
Alignment explanation
Indices: 7360--8790 Score: 1136
Period size: 171 Copynumber: 8.4 Consensus size: 170
7350 AATAAGACTT
* * * * *
7360 TAAAAAATTTTAACTCAAAGTCAATTATAAGATTATAAAACCATTTAAAGTGAGTAATAAGTCTT
1 TAAAAAAATTCAACTCAAAGTCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
* *
7425 TCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGCCAATGA-ATGACTTTTT-TTCACATTTC
66 TCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGATAT--CTTTTTCTTCACGTTTC
** ** * *
7488 TCAAGGTAGACCGTTAATTATAATCTGTTTTCATTAAAAAT-
129 TTGAGGTAGACATTTAATTATAATCTGTTTTAACTAAAAATA
* * * * * *
7529 GAAAAAAATTCAACTGAAAGTCAATTATGAGTTTACAAAACCATTTAAAGCGACTAACAAGGCTT
1 TAAAAAAATTCAACTCAAAGTCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
* * * * * * * *
7594 TTGATGGTATAGATGACTATAAATGGAGTTTTCTTACCAATGATATCTTTTTCTTCACATTTCTT
66 TCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGATATCTTTTTCTTCACGTTTCTT
* *
7659 GAGGTAGACATTTAATTGTAATCTTTTTTAA-TAAAAACTA
131 GAGGTAGACATTTAATTATAATCTGTTTTAACTAAAAA-TA
* * * *
7699 AAAAAAAATTCAACATCAAA-TCAGTTATCAGATTATCAAACCATTTAAAGCGAGTAATAAGGCT
1 TAAAAAAATTCAAC-TCAAAGTCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
*** * * *
7763 TTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTTTTAATGA-ATGAATTTTTCTCCATGTTT
65 TTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGATAT--CTTTTTCTTCACGTTT
** * ** *
7827 CTCAAGGTAAACCA-TTAATTATAAAATGTTTTAACCAAAAAT-
128 CTTGAGGTAGA-CATTTAATTATAATCTGTTTTAACTAAAAATA
* * * *
7869 GAAAAAAATTCAACTTAAAGTCAATTATGAGTTTATAAAACTATTTAAAGCGAGTAATAAGGCTT
1 TAAAAAAATTCAACTCAAAGTCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
* * * * *
7934 TTGAAGGAATGGGTGACTATAAATGGGCTTTTCTAGCCAATGAATATCTTTTTCTTCATGTTTCT
66 TCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATG-ATATCTTTTTCTTCACGTTTCT
* * *
7999 TGAGGTAGGCATTGAATTATAATCTTTTTTAA-TAGAAAATA
130 TGAGGTAGACATTTAATTATAATCTGTTTTAACTA-AAAATA
* * * * * *
8040 TAAAAAAATTCAAATTCAAA-TCAATAAAGAGATTAAAAAACCATTTACAGCGAGTAATGAGGC-
1 TAAAAAAATTC-AACTCAAAGTCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
* * * * * *
8103 TTCTGAAGGCTTGGGTAACAATAAATAGG-CTTTTCTTGCCAATGA-ATTGGTTTTTCTTTAGGT
65 TTC-GAAGGCATGGGTGACTATAAAT-GGACTTTTCTTGCCAATGATA-T-CTTTTTCTTCACGT
* * * * * * *
8166 TTCTTTG-GGCAGACATTCAACTGTAATATGTTTGAACCAAAAATA
126 TTC-TTGAGGTAGACATTTAATTATAATCTGTTTTAACTAAAAATA
* *******************
8211 TAAAAAAATTCAACTTAAAGTCAATTATGAGATTATANNNNNNNNNNNNNNNNNNNATAAGGCTT
1 TAAAAAAATTCAACTCAAAGTCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
** ** * *
8276 TTAAAGGCATAAGTGACTATAAATGGACTTTTCTTGCCAATGAATATTTTTTTCTTCATGTTTTC
66 TCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATG-ATATCTTTTTCTTCACG-TTTC
*
8341 TT-AGGTAGACATTTAATTATAAT-TGGTTTAAACTAAAAATAA
129 TTGAGGTAGACATTTAATTATAATCT-GTTTTAACTAAAAAT-A
* * * * *
8383 AAAAAAAATTCAAC-CTAAAGTCAATTATGAGACTATAAAATCATTTAAAGTGAGTAATAAGTCT
1 TAAAAAAATTCAACTC-AAAGTCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
* * * * ** * * *
8447 TTCGAAGGCATAGGCGACTATAGATAGACTTTTCTTATCAATAAATATCCTTTTCTTCATGTTTC
65 TTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAAT-GATATCTTTTTCTTCACGTTTC
* * * *
8512 TAGAGATAGACATTCAATTATAATCTGTTCTAACTAAAAATA
129 TTGAGGTAGACATTTAATTATAATCTGTTTTAACTAAAAATA
* * * * * * *
8554 TAAAAAAACTCAATTTTAAA-TTAATTATAAGCTTATAAAACCATTTAAAGCGAGTAAAAAGGCT
1 TAAAAAAATTCAA-CTCAAAGTCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
* ** * * * **
8618 TTTGAAGGCATGGACGAATACAAATGGACTATTCTTGCCAATGAATATCTTTTTCTTCACAATTC
65 TTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATG-ATATCTTTTTCTTCACGTTTC
* * * **********
8683 TTAAGGTGGACATTCAATTATAATCTGTTTTNNNNNNNNNNA
129 TTGAGGTAGACATTTAATTATAATCTGTTTTAACTAAAAATA
* * * *
8725 TAAAAATATTCAACTTCAAA-TCACTTATGATATTATCAAACCATTTAAAGCGAGTAATAAGGCT
1 TAAAAAAATTCAAC-TCAAAGTCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
8789 TT
65 TT
8791 TAAAAAATTT
Statistics
Matches: 981, Mismatches: 242, Indels: 76
0.76 0.19 0.06
Matches are distributed among these distances:
168 12 0.01
169 136 0.14
170 230 0.23
171 447 0.46
172 154 0.16
173 2 0.00
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (170 bp):
TAAAAAAATTCAACTCAAAGTCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
TCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGATATCTTTTTCTTCACGTTTCTT
GAGGTAGACATTTAATTATAATCTGTTTTAACTAAAAATA
Found at i:8791 original size:514 final size:506
Alignment explanation
Indices: 7376--8794 Score: 1315
Period size: 514 Copynumber: 2.8 Consensus size: 506
7366 ATTTTAACTC
*
7376 AAAGTCAATTATAAGATTATAAAACCATTTAAAGTGAGTAATAAGTCTTTCGAAGGCATGAGTGA
1 AAAGTCAATTATGAGATTATAAAA-CATTTAAAGTGAGTAATAAGTCTTTCGAAGGCATG-GTGA
* * ** *
7441 CTATAAATGGACTTTTCTTGCCAATGAATGA--CTTTTTTTCACATTTCTCA-AGGTAGACCGTT
64 CTATAAATGGACTTTTCTTACCAATGAAT-ATCCTTTTCTTCATGTTTCT-AGAGGTAGA-CATT
* * * * * * *
7503 AATTATAATCTGTTTTCATTAAAAAT-GAAAAAAATTCAACTGAAAGTCAATTATGAGTTTACAA
126 AATTATAATCTGTTTT-AATAAAAATATAAAAAAATTCAATTCAAA-TCAATTATAAGATTAAAA
* * * * * * * * *
7567 AACCATTTAAAGCGACTAACAAGGCTTTTGATGGTATAGATGACTATAAATGGAGTTTTCTTACC
189 AACCATTTAAAGCGAGTAAAAAGGCTTTTGAAGGCATGGACGAATA-AAATGGACTTTTCTTGCC
* * * *
7632 AATG-ATATCTTTTTCTTCACATTTCTTGAGGTAGACATTTAATTGTAATCTTTTTTAATAAAAA
253 AATGAATATCTTTTTCTTCACATTTCTTAAGGTAGACATTCAATTGTAATCTGTTTTAACAAAAA
* * * * *
7696 CTAAAAAAAAATTCAACATCAAATCAGTTATCAGATTATCAAACCATTTAAAGCGAGTAATAAGG
318 ATATAAAAAAATTCAACTTCAAATCAATTATGAGATTATCAAACCATTTAAAGCGAGTAATAAGG
** ** ***
7761 CTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCTTTTTAATGAATGAATTTTTCTCCATGTT
383 CTTTTAAAGGCATAAGTGACTATAAATGGACTTTTCTTGCCAATGAATGAATTTTTCTCCATGTT
* * *
7826 TCTCAAGGTAAACCATTAATTATAAAATGTTTTAACCAAAAATGAAAAAAATTCAACTT
448 TCTCAAGGTAAACCATTAATTATAAAATGTTTAAACCAAAAATAAAAAAAATTCAACCT
* * * * *
7885 AAAGTCAATTATGAGTTTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGA
1 AAAGTCAATTATGAGATTATAAAAC-ATTTAAAGTGAGTAATAAGTCTTTCGAAGGCAT-GGTGA
* * * *
7950 CTATAAATGGGCTTTTC-TAGCCAATGAATATCTTTTTCTTCATGTTTCTTGAGGTAGGCATTGA
64 CTATAAATGGACTTTTCTTA-CCAATGAATATCCTTTTCTTCATGTTTCTAGAGGTAGACATT-A
* *
8014 ATTATAATCTTTTTTAATAGAAAATATAAAAAAATTCAAATTCAAATCAA-TAAAGAGATTAAAA
127 ATTATAATCTGTTTTAATA-AAAATATAAAAAAATTC-AATTCAAATCAATTATA-AGATTAAAA
* ** * *
8078 AACCATTTACAGCGAGTAATGAGGCTTCTGAAGGCTTGGGTAAC-AAT-AAATAGG-CTTTTCTT
189 AACCATTTAAAGCGAGTAAAAAGGCTTTTGAAGGCAT-GG--ACGAATAAAAT-GGACTTTTCTT
* * ** ** * * * * *
8140 GCCAATGAAT-TGGTTTTTCTTTAGGTTTCTTTGGGCAGACATTCAACTGTAATATGTTTGAACC
250 GCCAATGAATAT-CTTTTTCTTCACATTTCTTAAGGTAGACATTCAATTGTAATCTGTTTTAACA
******************
8204 AAAAATATAAAAAAATTCAACTT-AAAGTCAATTATGAGATTAT-ANNNNNNNNNNNNNNNNNNN
314 AAAAATATAAAAAAATTCAACTTCAAA-TCAATTATGAGATTATCA-AACCATTTAAAGCGAGTA
*
8267 ATAAGGCTTTTAAAGGCATAAGTGACTATAAATGGACTTTTCTTGCCAATGAAT-ATTTTTTTCT
377 ATAAGGCTTTTAAAGGCATAAGTGACTATAAATGGACTTTTCTTGCCAATGAATGA-ATTTTTCT
* * * * *
8331 TCATGTTT-TCTTAGGTAGA-CATTTAATTAT-AATTGGTTTAAACTAAAAATAAAAAAAAAATT
441 CCATGTTTCTC-AAGGTAAACCA-TTAATTATAAAAT-GTTTAAACCAAAAAT--AAAAAAAATT
8393 CAACCT
501 CAACCT
* *
8399 AAAGTCAATTATGAGACTATAAAATCATTTAAAGTGAGTAATAAGTCTTTCGAAGGCATAGGCGA
1 AAAGTCAATTATGAGATTATAAAA-CATTTAAAGTGAGTAATAAGTCTTTCGAAGGCAT-GGTGA
* * * * *
8464 CTATAGATAGACTTTTCTTATCAATAAATATCCTTTTCTTCATGTTTCTAGAGATAGACATTCAA
64 CTATAAATGGACTTTTCTTACCAATGAATATCCTTTTCTTCATGTTTCTAGAGGTAGACATT-AA
* * * * * *
8529 TTATAATCTGTTCTAACTAAAAATATAAAAAAACTCAATTTTAAATTAATTATAAGCTTATAAAA
128 TTATAATCTGTTTTAA-TAAAAATATAAAAAAATTCAA-TTCAAATCAATTATAAGATTAAAAAA
*
8594 CCATTTAAAGCGAGTAAAAAGGCTTTTGAAGGCATGGACGAATACAAATGGACTATTCTTGCCAA
191 CCATTTAAAGCGAGTAAAAAGGCTTTTGAAGGCATGGACGAATA-AAATGGACTTTTCTTGCCAA
* * * **********
8659 TGAATATCTTTTTCTTCACAATTCTTAAGGTGGACATTCAATTATAATCTGTTTTNNNNNNNNNN
255 TGAATATCTTTTTCTTCACATTTCTTAAGGTAGACATTCAATTGTAATCTGTTTTAACAAAAAAT
* * *
8724 ATAAAAATATTCAACTTCAAATCACTTATGATATTATCAAACCATTTAAAGCGAGTAATAAGGCT
320 ATAAAAAAATTCAACTTCAAATCAATTATGAGATTATCAAACCATTTAAAGCGAGTAATAAGGCT
8789 TTTAAA
385 TTTAAA
8795 AAATTTAACT
Statistics
Matches: 707, Mismatches: 166, Indels: 69
0.75 0.18 0.07
Matches are distributed among these distances:
508 3 0.00
509 86 0.12
510 42 0.06
511 82 0.12
512 174 0.25
513 8 0.01
514 299 0.42
515 13 0.02
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.35
Consensus pattern (506 bp):
AAAGTCAATTATGAGATTATAAAACATTTAAAGTGAGTAATAAGTCTTTCGAAGGCATGGTGACT
ATAAATGGACTTTTCTTACCAATGAATATCCTTTTCTTCATGTTTCTAGAGGTAGACATTAATTA
TAATCTGTTTTAATAAAAATATAAAAAAATTCAATTCAAATCAATTATAAGATTAAAAAACCATT
TAAAGCGAGTAAAAAGGCTTTTGAAGGCATGGACGAATAAAATGGACTTTTCTTGCCAATGAATA
TCTTTTTCTTCACATTTCTTAAGGTAGACATTCAATTGTAATCTGTTTTAACAAAAAATATAAAA
AAATTCAACTTCAAATCAATTATGAGATTATCAAACCATTTAAAGCGAGTAATAAGGCTTTTAAA
GGCATAAGTGACTATAAATGGACTTTTCTTGCCAATGAATGAATTTTTCTCCATGTTTCTCAAGG
TAAACCATTAATTATAAAATGTTTAAACCAAAAATAAAAAAAATTCAACCT
Found at i:8845 original size:65 final size:66
Alignment explanation
Indices: 8725--8859 Score: 193
Period size: 65 Copynumber: 2.1 Consensus size: 66
8715 NNNNNNNNNA
* * *
8725 TAAAAATATTCAACTTCAAATCACTTATGATATTATCAAACCATTTAAAGCGAGTAATAAGGCTT
1 TAAAAATATTCAACTTAAAATCACTTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
8790 T
66 T
* * *
8791 TAAAAA-ATTTAACTTAAAATCAAC-TATGAGATTATAAAACCATTTAAAGTGAGTAATAAGTCT
1 TAAAAATATTCAACTTAAAATC-ACTTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
8854 TT
65 TT
8856 TAAA
1 TAAA
8860 GGCTTTTGTG
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
65 54 0.87
66 8 0.13
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (66 bp):
TAAAAATATTCAACTTAAAATCACTTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
T
Found at i:9670 original size:180 final size:170
Alignment explanation
Indices: 9410--9797 Score: 490
Period size: 180 Copynumber: 2.2 Consensus size: 170
9400 NNNNNNNNNN
9410 TTTAAAGCGAGTAATAAGTCTTTCGAAGGATTTTGAAGGCATGGGTGATTATAAATGGACTTTTC
1 TTTAAAGCGAGTAATAAGTCTTTCGAAGGATTTTGAAGGCATGGGTGATTATAAATGGACTTTTC
*
9475 TTACCAATGAATGACTTTTTCTTCACGATTCTCAAGCTAGACCATTAATTTTAATNNNNNNNNNN
66 TTACCAATGAATGACTTTTACTTCACGATTCTCAAGCTAGACCATTAATTTTAAT----------
* *
9540 CAAAAATGAAAAAAATTTAACTTAAAGTCAATTATAAGATTC-TAAAACTA
121 CAAAAATGAAAAAAATTTAACTTAAAGTCAATTATAAG-TTCACAAAACCA
* *
9590 TTTAAAGCGAGTAATAAGTCTTTCGAAGGCTTTTGAAGGCATGGGTGATTATAAATGGACTTTTT
1 TTTAAAGCGAGTAATAAGTCTTTCGAAGGATTTTGAAGGCATGGGTGATTATAAATGGACTTTTC
9655 TTACCAATGAATGACTTTTACTTCACGATTCTCAAGCTAGACCATTAATTTTAATNNNNNNNNNN
66 TTACCAATGAATGACTTTTACTTCACGATTCTCAAGCTAGACCATTAATTTTAAT----------
*
9720 CAAAAATGAAAAAAATTTAACTTAAAGTCAATTATGAGTTCACAAAACCA
121 CAAAAATGAAAAAAATTTAACTTAAAGTCAATTATAAGTTCACAAAACCA
** * *
9770 TTTAAAGCGAACAATAAGGCTTTTGAAG
1 TTTAAAGCGAGTAATAAGTCTTTCGAAG
9798 CCATGGGTGA
Statistics
Matches: 197, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
179 3 0.02
180 194 0.98
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.32
Consensus pattern (170 bp):
TTTAAAGCGAGTAATAAGTCTTTCGAAGGATTTTGAAGGCATGGGTGATTATAAATGGACTTTTC
TTACCAATGAATGACTTTTACTTCACGATTCTCAAGCTAGACCATTAATTTTAATCAAAAATGAA
AAAAATTTAACTTAAAGTCAATTATAAGTTCACAAAACCA
Done.