Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397267.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_204.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6982396
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 27749 characters in sequence are not A, C, G, or T
File 5 of 12
Found at i:2992424 original size:33 final size:33
Alignment explanation
Indices: 2992387--2992463 Score: 109
Period size: 33 Copynumber: 2.3 Consensus size: 33
2992377 ATATCAAATG
* *
2992387 AATATGTCATATTATCAATAATTATGATATGTT
1 AATATATCATATCATCAATAATTATGATATGTT
* *
2992420 AATATATTATATCATCATTAATTATGATATGTT
1 AATATATCATATCATCAATAATTATGATATGTT
*
2992453 AACATATCATA
1 AATATATCATA
2992464 CTGGTGTCAT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.44
Consensus pattern (33 bp):
AATATATCATATCATCAATAATTATGATATGTT
Found at i:3002813 original size:19 final size:19
Alignment explanation
Indices: 3002789--3002837 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
3002779 TCTTAAGATT
3002789 TACCCCAGC-TCCTTCGACC
1 TACCCCAGCAT-CTTCGACC
*
3002808 TACCCCAGCATCTTGGACC
1 TACCCCAGCATCTTCGACC
3002827 TACCCCAGCAT
1 TACCCCAGCAT
3002838 TATCATCTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
19 27 0.96
20 1 0.04
ACGTcount: A:0.20, C:0.47, G:0.12, T:0.20
Consensus pattern (19 bp):
TACCCCAGCATCTTCGACC
Found at i:3010438 original size:11 final size:11
Alignment explanation
Indices: 3010424--3010448 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
3010414 TATGTGATAA
3010424 ATCAAAGATGG
1 ATCAAAGATGG
3010435 ATCAAAGATGG
1 ATCAAAGATGG
3010446 ATC
1 ATC
3010449 GGCTTACGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.12, G:0.24, T:0.20
Consensus pattern (11 bp):
ATCAAAGATGG
Found at i:3015084 original size:15 final size:15
Alignment explanation
Indices: 3015066--3015121 Score: 69
Period size: 15 Copynumber: 3.8 Consensus size: 15
3015056 CATTAAATGC
*
3015066 AATGTGATTACAGGT
1 AATGTGATTACAAGT
*
3015081 AATGTGATTGCAAGT
1 AATGTGATTACAAGT
* *
3015096 AATGTGATTGCAAGC
1 AATGTGATTACAAGT
3015111 AA-GTGATTACA
1 AATGTGATTACA
3015122 GGGAAAATAC
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
14 8 0.22
15 29 0.78
ACGTcount: A:0.36, C:0.09, G:0.25, T:0.30
Consensus pattern (15 bp):
AATGTGATTACAAGT
Found at i:3015348 original size:34 final size:35
Alignment explanation
Indices: 3015300--3015389 Score: 91
Period size: 34 Copynumber: 2.7 Consensus size: 35
3015290 ATTAATTTTT
* *
3015300 ATATAATATCATTTTTAAATATATT-TT-TAATATC
1 ATATATTATTATTTTT-AATATATTATTATAATATC
* *
3015334 ATATATTATTATTTTT-ATTTATTATTATAATATT
1 ATATATTATTATTTTTAATATATTATTATAATATC
*
3015368 TTATATT-TTATTTTT-ATATATT
1 ATATATTATTATTTTTAATATATT
3015390 TATATTTTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
32 6 0.12
33 16 0.33
34 26 0.54
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (35 bp):
ATATATTATTATTTTTAATATATTATTATAATATC
Found at i:3015374 original size:15 final size:13
Alignment explanation
Indices: 3015351--3015633 Score: 61
Period size: 13 Copynumber: 20.5 Consensus size: 13
3015341 ATTATTTTTA
3015351 TTTATTATTATAATAT
1 TTTA-TATT-TAAT-T
*
3015367 TTTATATTTTATTT
1 TTTATA-TTTAATT
3015381 TTATATATTTATATT
1 TT-TATATTTA-ATT
3015396 TTT-TA-TTAATT
1 TTTATATTTAATT
*
3015407 TTTATATAATATCATT
1 TTTATAT--T-TAATT
* *
3015423 TCTTAAATAT-ATT
1 T-TTATATTTAATT
*
3015436 TTTA-ATATCATATAT
1 TTTATAT-TTA-AT-T
*
3015451 TTTAT-TTTTATT
1 TTTATATTTAATT
* *
3015463 ATTAT-TATAATAT
1 TTTATATTTAAT-T
*
3015476 TTTATATTTTTATT
1 TTTATA-TTTAATT
3015490 TTAATATATTTATATT
1 TT--TATATTTA-ATT
3015506 TTT-TA-TTAATT
1 TTTATATTTAATT
*
3015517 TTTATATAATATATT
1 TTTATAT-TTA-ATT
* *
3015532 TCTTAAATAT-ATT
1 T-TTATATTTAATT
*
3015545 TTTA-ATATCATATAT
1 TTTATAT-TTA-AT-T
*
3015560 TTTAT-TTTTATT
1 TTTATATTTAATT
*
3015572 TATTAT-TATAATAT
1 T-TTATATTTAAT-T
*
3015586 TTTATATTTTATT
1 TTTATATTTAATT
*
3015599 TTTATATATT-ATA
1 TTTATAT-TTAATT
3015612 TTTATATTATTAATT
1 TTTATA-T-TTAATT
3015627 TTTATAT
1 TTTATAT
3015634 AATATTATTT
Statistics
Matches: 203, Mismatches: 28, Indels: 74
0.67 0.09 0.24
Matches are distributed among these distances:
11 16 0.08
12 27 0.13
13 49 0.24
14 34 0.17
15 47 0.23
16 25 0.12
17 5 0.02
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (13 bp):
TTTATATTTAATT
Found at i:3015457 original size:110 final size:111
Alignment explanation
Indices: 3015270--3015816 Score: 847
Period size: 110 Copynumber: 5.0 Consensus size: 111
3015260 ATATAAGTTA
3015270 ATATATTTATATTTTTTATTATTAATTTTTATATAATATCATTT-TTAAATATATTTTTAATATC
1 ATATATTTATA--TTTTATTATTAATTTTTATATAATATCATTTCTTAAATATATTTTTAATATC
3015334 ATATATTATTATTTTTATTTATTATTATAATATTTTATATTTTATTTTT
64 ATATATT-TTATTTTTATTTATTATTATAATATTTTATATTTTATTTTT
3015383 ATATATTTATATTTT-TTATTAATTTTTATATAATATCATTTCTTAAATATATTTTTAATATCAT
1 ATATATTTATATTTTATTATTAATTTTTATATAATATCATTTCTTAAATATATTTTTAATATCAT
*
3015447 ATATTTTATTTTTA-TTATTATTATAATATTTTATATTTTTATTTTA
66 ATATTTTATTTTTATTTATTATTATAATATTTTATA-TTTTATTTTT
3015493 ATATATTTATATTTT-TTATTAATTTTTATATAATAT-ATTTCTTAAATATATTTTTAATATCAT
1 ATATATTTATATTTTATTATTAATTTTTATATAATATCATTTCTTAAATATATTTTTAATATCAT
3015556 ATATTTTATTTTTATTTATTATTATAATATTTTATATTTTATTTTT
66 ATATTTTATTTTTATTTATTATTATAATATTTTATATTTTATTTTT
* * *
3015602 ATATA-TTATATTTATATTATTAATTTTTATATAATATTATTTCTT-AAGATATTTTTAATGT-A
1 ATATATTTATATTT-TATTATTAATTTTTATATAATATCATTTCTTAAATATATTTTTAATATCA
3015664 TATA-TTTATTTTTATTTATT-TATATAATATTTTATATTTTATTTTT
65 TATATTTTATTTTTATTTATTAT-TATAATATTTTATATTTTATTTTT
*
3015710 A-ATATATTATATTTATATTATTAATTTTTATATAATATCATATT-TTAAATATATTTTTAATGT
1 ATATAT-TTATATTT-TATTATTAATTTTTATATAATATCAT-TTCTTAAATATATTTTTAATAT
*
3015773 CATATAATTTATTTTTATTTATTA-TATAAT-TTTT-TATTTT-TTTT
63 CATATATTTTATTTTTATTTATTATTATAATATTTTATATTTTATTTT
3015817 CATTTCTTTA
Statistics
Matches: 414, Mismatches: 6, Indels: 33
0.91 0.01 0.07
Matches are distributed among these distances:
107 4 0.01
108 53 0.13
109 124 0.30
110 157 0.38
111 49 0.12
112 16 0.04
113 11 0.03
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.64
Consensus pattern (111 bp):
ATATATTTATATTTTATTATTAATTTTTATATAATATCATTTCTTAAATATATTTTTAATATCAT
ATATTTTATTTTTATTTATTATTATAATATTTTATATTTTATTTTT
Found at i:3015508 original size:23 final size:21
Alignment explanation
Indices: 3015453--3015513 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
3015443 TCATATATTT
*
3015453 TATTTT-TATTATTATTATAA
1 TATTTTATATTTTTATTATAA
*
3015473 TATTTTATATTTTTATTTTAA
1 TATTTTATATTTTTATTATAA
3015494 TATATTTATATTTTTTATTA
1 TAT-TTTATA-TTTTTATTA
3015514 ATTTTTATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
20 6 0.17
21 15 0.43
22 6 0.17
23 8 0.23
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (21 bp):
TATTTTATATTTTTATTATAA
Found at i:3015816 original size:29 final size:30
Alignment explanation
Indices: 3015779--3015844 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 30
3015769 ATGTCATATA
*
3015779 ATTTATTTTTATTTA-TT-ATATAATTTTTT
1 ATTTATTTTCATTTATTTAATAT-ATTTTTT
* *
3015808 ATTTTTTTTCATTTCTTTAATATATTTTTT
1 ATTTATTTTCATTTATTTAATATATTTTTT
3015838 ATATTAT
1 AT-TTAT
3015845 ATATTTTATA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
29 12 0.40
30 11 0.37
31 7 0.23
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (30 bp):
ATTTATTTTCATTTATTTAATATATTTTTT
Found at i:3015902 original size:11 final size:11
Alignment explanation
Indices: 3015888--3015943 Score: 67
Period size: 11 Copynumber: 4.8 Consensus size: 11
3015878 ATAAATATTA
3015888 ATTTTATTTAT
1 ATTTTATTTAT
*
3015899 ATTTTATTTTT
1 ATTTTATTTAT
*
3015910 ATTTTATTTTT
1 ATTTTATTTAT
3015921 ATTCTTATATTAT
1 ATT-TTAT-TTAT
3015934 ATATTTATTT
1 AT-TTTATTT
3015944 TAATTATAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
11 24 0.60
12 6 0.15
13 9 0.22
14 1 0.03
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (11 bp):
ATTTTATTTAT
Found at i:3015949 original size:17 final size:17
Alignment explanation
Indices: 3015882--3015956 Score: 71
Period size: 17 Copynumber: 4.3 Consensus size: 17
3015872 TATTATATAA
* *
3015882 ATATTAATTTTATTTAT
1 ATATTTATTTTAATTAT
* *
3015899 AT-TTTATTTTTATTTT
1 ATATTTATTTTAATTAT
*
3015915 ATTTTTATTCTTATATTAT
1 ATATTTATT-TTA-ATTAT
3015934 ATATTTATTTTAATTAT
1 ATATTTATTTTAATTAT
3015951 AATATT
1 -ATATT
3015957 ATAAAATATT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
16 12 0.26
17 13 0.28
18 10 0.21
19 12 0.26
ACGTcount: A:0.31, C:0.01, G:0.00, T:0.68
Consensus pattern (17 bp):
ATATTTATTTTAATTAT
Found at i:3022468 original size:2 final size:2
Alignment explanation
Indices: 3022461--3022489 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
3022451 TTTCATGGTG
3022461 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
3022490 CAAGTTAAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:3033865 original size:3 final size:3
Alignment explanation
Indices: 3033857--3033906 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
3033847 ACAGAAGGTT
*
3033857 AAG AAG AAG AAG AAG AAG ACG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
3033905 AA
1 AA
3033907 AGTAGGTTAC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.66, C:0.02, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:3052269 original size:2 final size:2
Alignment explanation
Indices: 3052264--3052290 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
3052254 AATTATACAC
3052264 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
3052291 TATTGGGGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:3073240 original size:4 final size:4
Alignment explanation
Indices: 3073231--3073255 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
3073221 ATAAGTACCA
3073231 TCAT TCAT TCAT TCAT TCAT TCAT T
1 TCAT TCAT TCAT TCAT TCAT TCAT T
3073256 TTGGGTCTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (4 bp):
TCAT
Found at i:3075693 original size:23 final size:23
Alignment explanation
Indices: 3075666--3075709 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
3075656 AGATCCCTTT
3075666 AACAACCAACATCTATTTACTGC
1 AACAACCAACATCTATTTACTGC
*
3075689 AACAACTAACATCTATTTACT
1 AACAACCAACATCTATTTACT
3075710 TGTTCAGGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.41, C:0.27, G:0.02, T:0.30
Consensus pattern (23 bp):
AACAACCAACATCTATTTACTGC
Found at i:3081646 original size:27 final size:27
Alignment explanation
Indices: 3081616--3081670 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
3081606 TAATATTCAT
*
3081616 AGCATTGCAAAGGTTTTAATCATAGAA
1 AGCATTACAAAGGTTTTAATCATAGAA
3081643 AGCATTACAAAGGTTTTAATCATAGAA
1 AGCATTACAAAGGTTTTAATCATAGAA
3081670 A
1 A
3081671 AGATAAGTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.44, C:0.11, G:0.16, T:0.29
Consensus pattern (27 bp):
AGCATTACAAAGGTTTTAATCATAGAA
Found at i:3085138 original size:15 final size:15
Alignment explanation
Indices: 3085107--3085136 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
3085097 GTCCACCCAG
3085107 GAAAAAAAAAAGAAA
1 GAAAAAAAAAAGAAA
3085122 GAAAGAAAAAAAGAA
1 GAAA-AAAAAAAGAA
3085137 GATATCAGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (15 bp):
GAAAAAAAAAAGAAA
Found at i:3121864 original size:2 final size:2
Alignment explanation
Indices: 3121857--3121885 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
3121847 TTGAATTCAT
3121857 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
3121886 TCCTACTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:3142568 original size:15 final size:16
Alignment explanation
Indices: 3142548--3142582 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
3142538 AGAATTTATA
3142548 ATTAAAAA-ATAATTT
1 ATTAAAAATATAATTT
*
3142563 ATTAAAAATATTATTT
1 ATTAAAAATATAATTT
3142579 ATTA
1 ATTA
3142583 TTTTATATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
ATTAAAAATATAATTT
Found at i:3142700 original size:11 final size:11
Alignment explanation
Indices: 3142686--3142719 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
3142676 TTTTTATTTT
*
3142686 TTATATTGATA
1 TTATATTAATA
3142697 TTATATTAATA
1 TTATATTAATA
*
3142708 TTATATGAATA
1 TTATATTAATA
3142719 T
1 T
3142720 AAAATAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (11 bp):
TTATATTAATA
Found at i:3142770 original size:22 final size:22
Alignment explanation
Indices: 3142745--3142793 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
3142735 ATTTTTATTA
*
3142745 AAAATAATTA-ATAATTAATAAT
1 AAAA-AATTATATAATTAAAAAT
* *
3142767 AAAAACTTATTTAATTAAAAAT
1 AAAAAATTATATAATTAAAAAT
3142789 AAAAA
1 AAAAA
3142794 TATAAAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (22 bp):
AAAAAATTATATAATTAAAAAT
Found at i:3142800 original size:29 final size:30
Alignment explanation
Indices: 3142749--3142835 Score: 76
Period size: 28 Copynumber: 3.0 Consensus size: 30
3142739 TTATTAAAAA
* * *
3142749 TAATTAATAATTAATAATA-AAAACTTATT
1 TAATTAACAAATAAAAATATAAAACTTATT
3142778 TAATTAA-AAATAAAAATATAAAA---ATT
1 TAATTAACAAATAAAAATATAAAACTTATT
* *
3142804 TAATTACACTAATAAAAAAATAAAGACTTATT
1 TAATTA-ACAAATAAAAATATAAA-ACTTATT
3142836 ATAAATTTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
26 9 0.19
27 1 0.02
28 22 0.47
29 12 0.26
32 3 0.06
ACGTcount: A:0.60, C:0.05, G:0.01, T:0.34
Consensus pattern (30 bp):
TAATTAACAAATAAAAATATAAAACTTATT
Found at i:3142860 original size:11 final size:11
Alignment explanation
Indices: 3142844--3142872 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
3142834 TTATAAATTT
3142844 TTTAAAAAAAA
1 TTTAAAAAAAA
3142855 TTT-AAAAAAA
1 TTTAAAAAAAA
3142865 TTTAAAAA
1 TTTAAAAA
3142873 TTTATTTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (11 bp):
TTTAAAAAAAA
Found at i:3145257 original size:16 final size:16
Alignment explanation
Indices: 3145236--3145267 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
3145226 ACTAATTGAA
*
3145236 CCACCCCTCTCCCCAC
1 CCACCCCTCACCCCAC
3145252 CCACCCCTCACCCCAC
1 CCACCCCTCACCCCAC
3145268 AAAAAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.75, G:0.00, T:0.09
Consensus pattern (16 bp):
CCACCCCTCACCCCAC
Found at i:3148413 original size:28 final size:26
Alignment explanation
Indices: 3148382--3148467 Score: 75
Period size: 28 Copynumber: 3.0 Consensus size: 26
3148372 TTTGAAAAAA
3148382 TTTAAATAAGTTTTTATATTTTTATT
1 TTTAAATAAGTTTTTATATTTTTATT
* *
3148408 ACTTTAATTACA-CTTTTATATTTTTATT
1 --TTTAAATA-AGTTTTTATATTTTTATT
3148436 TTGAATCAAATAAGTATTTTATATTTTTATT
1 TT---T-AAATAAGT-TTTTATATTTTTATT
3148467 T
1 T
3148468 CGAGTTAAGT
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
26 2 0.04
28 22 0.47
29 3 0.06
30 4 0.09
31 16 0.34
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.60
Consensus pattern (26 bp):
TTTAAATAAGTTTTTATATTTTTATT
Found at i:3148488 original size:30 final size:31
Alignment explanation
Indices: 3148421--3148488 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
3148411 TTAATTACAC
* *
3148421 TTTTATATTTTTATTTTGAATCAAATAAGTA
1 TTTTATATTTTTATTTCGAATCAAATAAATA
* * *
3148452 TTTTATATTTTTATTTCGAGTTAAGTAAAT-
1 TTTTATATTTTTATTTCGAATCAAATAAATA
3148482 TTTTATA
1 TTTTATA
3148489 ATTAATTATT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 7 0.22
31 25 0.78
ACGTcount: A:0.32, C:0.03, G:0.07, T:0.57
Consensus pattern (31 bp):
TTTTATATTTTTATTTCGAATCAAATAAATA
Found at i:3152679 original size:28 final size:28
Alignment explanation
Indices: 3152648--3152701 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
3152638 TATTACAAAC
*
3152648 AAATAAATTATATCAAAAATAAATAAGT
1 AAATAAATTACATCAAAAATAAATAAGT
* *
3152676 AAATACATTACATCAAATATAAATAA
1 AAATAAATTACATCAAAAATAAATAA
3152702 AATTTCAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.28
Consensus pattern (28 bp):
AAATAAATTACATCAAAAATAAATAAGT
Found at i:3153522 original size:22 final size:22
Alignment explanation
Indices: 3153497--3153543 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
3153487 GTACCAACCT
*
3153497 GGGTTAGCCCTCAGACCTAAAC
1 GGGTCAGCCCTCAGACCTAAAC
* *
3153519 GGGTCAGCCCTCGGGCCTAAAC
1 GGGTCAGCCCTCAGACCTAAAC
3153541 GGG
1 GGG
3153544 CTAACCCGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.21, C:0.32, G:0.32, T:0.15
Consensus pattern (22 bp):
GGGTCAGCCCTCAGACCTAAAC
Found at i:3177856 original size:18 final size:18
Alignment explanation
Indices: 3177833--3177869 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
3177823 ATATAAATAA
3177833 AAAGACAAAAAAAAAGAG
1 AAAGACAAAAAAAAAGAG
*
3177851 AAAGACAAAAAGAAAGAG
1 AAAGACAAAAAAAAAGAG
3177869 A
1 A
3177870 TGGAAAGAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.76, C:0.05, G:0.19, T:0.00
Consensus pattern (18 bp):
AAAGACAAAAAAAAAGAG
Found at i:3193824 original size:29 final size:30
Alignment explanation
Indices: 3193792--3193864 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 30
3193782 ATTTAAAAGT
*
3193792 TTTAAATAAATTTTTATATTTTTATTAT-A
1 TTTAAATAAATTTTTATATATTTATTATAA
* *
3193821 TTT-AATAAAATTTGTATATATTTATTTTAA
1 TTTAAAT-AAATTTTTATATATTTATTATAA
*
3193851 ATTAAATAAATTTT
1 TTTAAATAAATTTT
3193865 AATAATTAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
28 3 0.08
29 21 0.58
30 9 0.25
31 3 0.08
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (30 bp):
TTTAAATAAATTTTTATATATTTATTATAA
Found at i:3193859 original size:31 final size:29
Alignment explanation
Indices: 3193793--3193864 Score: 78
Period size: 31 Copynumber: 2.5 Consensus size: 29
3193783 TTTAAAAGTT
*
3193793 TTAAAT-AAATTTTTATATTTTTATTATA
1 TTAAATAAAATTTTTATATTTTTATTAAA
*
3193821 TTTAATAAAATTTGTATATATTTATT-TTAAA
1 TTAAATAAAATTT-T-TATATTT-TTATTAAA
3193852 TTAAAT-AAATTTT
1 TTAAATAAAATTTT
3193865 AATAATTAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
28 5 0.14
29 7 0.19
30 7 0.19
31 16 0.43
32 2 0.05
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (29 bp):
TTAAATAAAATTTTTATATTTTTATTAAA
Found at i:3209364 original size:23 final size:23
Alignment explanation
Indices: 3209320--3209364 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
3209310 AGTGTCATGG
* *
3209320 ATAGACAAAAAAGTATTTTATGC
1 ATAGACAAAAAAATATTATATGC
3209343 ATAGACAAAAAAA-ATATATATG
1 ATAGACAAAAAAATAT-TATATG
3209365 TAAGAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.56, C:0.07, G:0.11, T:0.27
Consensus pattern (23 bp):
ATAGACAAAAAAATATTATATGC
Found at i:3225884 original size:17 final size:18
Alignment explanation
Indices: 3225844--3225884 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
3225834 GATTGGCAGC
3225844 TTGTTTTCCTTTTTCACA
1 TTGTTTTCCTTTTTCACA
3225862 TT-TTTT-CTTTTTC-CA
1 TTGTTTTCCTTTTTCACA
3225877 TTCGTTTT
1 TT-GTTTT
3225885 TCTCAAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 4 0.19
16 7 0.33
17 8 0.38
18 2 0.10
ACGTcount: A:0.07, C:0.20, G:0.05, T:0.68
Consensus pattern (18 bp):
TTGTTTTCCTTTTTCACA
Found at i:3227647 original size:2 final size:2
Alignment explanation
Indices: 3227640--3227670 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
3227630 ATGTTTCTTT
3227640 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
3227671 TGTTTGCAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:3238231 original size:2 final size:2
Alignment explanation
Indices: 3238224--3238254 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
3238214 CGATATCTAC
3238224 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
3238255 ATAACATCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:3249378 original size:13 final size:13
Alignment explanation
Indices: 3249360--3249394 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
3249350 CATTCCTCTT
3249360 GTAAAGTTTTGCC
1 GTAAAGTTTTGCC
*
3249373 GTAAAGTTCTGCC
1 GTAAAGTTTTGCC
*
3249386 ATAAAGTTT
1 GTAAAGTTT
3249395 ATACATGCAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (13 bp):
GTAAAGTTTTGCC
Found at i:3252528 original size:17 final size:17
Alignment explanation
Indices: 3252508--3252541 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
3252498 GTTTTTTTTA
3252508 TTTTA-AATTAAATAATT
1 TTTTATAATT-AATAATT
3252525 TTTTATAATTAATAATT
1 TTTTATAATTAATAATT
3252542 AATTTAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTTATAATTAATAATT
Found at i:3252733 original size:17 final size:17
Alignment explanation
Indices: 3252711--3252746 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
3252701 ACTCTTCACA
3252711 TTAATACTATATCAGTG
1 TTAATACTATATCAGTG
*
3252728 TTAATATTATATCAGTG
1 TTAATACTATATCAGTG
3252745 TT
1 TT
3252747 GTGAAAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.33, C:0.08, G:0.11, T:0.47
Consensus pattern (17 bp):
TTAATACTATATCAGTG
Found at i:3258966 original size:2 final size:2
Alignment explanation
Indices: 3258959--3258987 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
3258949 ATTCAGATCT
3258959 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
3258988 GTATTCATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:3283543 original size:23 final size:23
Alignment explanation
Indices: 3283513--3283556 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
3283503 TTCATAAAAA
*
3283513 TAAAATAA-AATTAAAATTTTATT
1 TAAAATAATAAAT-AAATTTTATT
3283536 TAAAATAATAAATAAATTTTA
1 TAAAATAATAAATAAATTTTA
3283557 ATAAATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (23 bp):
TAAAATAATAAATAAATTTTATT
Found at i:3304735 original size:22 final size:22
Alignment explanation
Indices: 3304691--3304737 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
3304681 ATTGATAAAT
3304691 AATATTACTATTAATATTATTAA
1 AATATTACTATT-ATATTATTAA
*
3304714 AATATTAGCTATT-TATTTTTAA
1 AATATTA-CTATTATATTATTAA
3304736 AA
1 AA
3304738 AATAAAAGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 10 0.45
23 7 0.32
24 5 0.23
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (22 bp):
AATATTACTATTATATTATTAA
Found at i:3304738 original size:23 final size:23
Alignment explanation
Indices: 3304678--3304738 Score: 56
Period size: 23 Copynumber: 2.6 Consensus size: 23
3304668 ATTATTTATG
3304678 TATATTGA-TAAATAATATTACTAT
1 TATATT-ATTAAA-AATATTACTAT
3304702 TAATATTATT-AAAATATTAGCTAT
1 T-ATATTATTAAAAATATTA-CTAT
*
3304726 T-TATTTTTAAAAA
1 TATATTATTAAAAA
3304739 ATAAAAGAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
22 6 0.19
23 11 0.34
24 9 0.28
25 6 0.19
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (23 bp):
TATATTATTAAAAATATTACTAT
Found at i:3316192 original size:75 final size:75
Alignment explanation
Indices: 3316091--3316278 Score: 256
Period size: 76 Copynumber: 2.5 Consensus size: 75
3316081 AAGTTCAAGA
* * * *
3316091 TCAAGATCAAGTCATCAGGATCTTGAAAGGAAGATTG-AAAAATTAATTAGA-GATAATTCTTTA
1 TCAAGACCAAGTCATCAGGACCTTGAAAAGAAGATTGAAAAAATTAATTAGAGGA-AATTCTTCA
3316154 TTAAAATACAT
65 TTAAAATACAT
* * *
3316165 TCGAGACCAAGTCATCAAGACCTTTGAAAAGAGGATTGAAAAAATTAATTAGAGGAAATTCTTCA
1 TCAAGACCAAGTCATCAGGACC-TTGAAAAGAAGATTGAAAAAATTAATTAGAGGAAATTCTTCA
3316230 TTAAAATACAT
65 TTAAAATACAT
3316241 TCAAGACCAAGTCATCAGGACCCTTGAAATA-AAGATTG
1 TCAAGACCAAGTCATCAGGA-CCTTGAAA-AGAAGATTG
3316279 GAGGGAAATT
Statistics
Matches: 99, Mismatches: 10, Indels: 8
0.85 0.09 0.07
Matches are distributed among these distances:
74 18 0.18
75 13 0.13
76 63 0.64
77 5 0.05
ACGTcount: A:0.44, C:0.13, G:0.16, T:0.27
Consensus pattern (75 bp):
TCAAGACCAAGTCATCAGGACCTTGAAAAGAAGATTGAAAAAATTAATTAGAGGAAATTCTTCAT
TAAAATACAT
Found at i:3316634 original size:20 final size:20
Alignment explanation
Indices: 3316609--3316661 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
3316599 GAGATCATTA
3316609 TGGAGATCAAAGCAAGATTC
1 TGGAGATCAAAGCAAGATTC
* *
3316629 TGGAGATCAAAGTAAGATTT
1 TGGAGATCAAAGCAAGATTC
3316649 TGGAGATCAAAGC
1 TGGAGATCAAAGC
3316662 CCATTACAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.40, C:0.11, G:0.26, T:0.23
Consensus pattern (20 bp):
TGGAGATCAAAGCAAGATTC
Found at i:3316733 original size:30 final size:28
Alignment explanation
Indices: 3316669--3316738 Score: 77
Period size: 30 Copynumber: 2.4 Consensus size: 28
3316659 AGCCCATTAC
*
3316669 AAGGAAGATTATGGATCTAAGCCTCAAG
1 AAGGAAGATTATGGATCTAAGCATCAAG
* * **
3316697 AGGGAAGATTCTGGAGATCTAAGCATCCGG
1 AAGGAAGATTAT-G-GATCTAAGCATCAAG
3316727 AAGGAAGATTAT
1 AAGGAAGATTAT
3316739 TAAGATCCAA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
28 10 0.30
29 1 0.03
30 22 0.67
ACGTcount: A:0.37, C:0.13, G:0.29, T:0.21
Consensus pattern (28 bp):
AAGGAAGATTATGGATCTAAGCATCAAG
Found at i:3317060 original size:30 final size:29
Alignment explanation
Indices: 3316993--3317066 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 29
3316983 CCTCCAGAGG
* *
3316993 GAAGATTATGGAGATTTAAACCTCGAAAG
1 GAAGATTATGGAGATCTAAACCTCGAAAA
* * * *
3317022 GTAGATTATGGATATCTAAGCCTTTGAAAA
1 GAAGATTATGGAGATCTAAACC-TCGAAAA
*
3317052 GAAGATTATGAAGAT
1 GAAGATTATGGAGAT
3317067 TTTAGAGATC
Statistics
Matches: 35, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
29 18 0.51
30 17 0.49
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (29 bp):
GAAGATTATGGAGATCTAAACCTCGAAAA
Found at i:3317395 original size:38 final size:38
Alignment explanation
Indices: 3317342--3317416 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
3317332 ACATCCTCTT
*
3317342 AAGGCTCACTGTTCTCAATGGTACATCGTTAGTACCCC
1 AAGGCTCACTATTCTCAATGGTACATCGTTAGTACCCC
* *
3317380 AAGGCTCACTATTCTCAGTGGTATATCGTTAGTACCC
1 AAGGCTCACTATTCTCAATGGTACATCGTTAGTACCC
3317417 TAGAGTATGC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
AAGGCTCACTATTCTCAATGGTACATCGTTAGTACCCC
Found at i:3317452 original size:20 final size:19
Alignment explanation
Indices: 3317415--3317452 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
3317405 TCGTTAGTAC
*
3317415 CCTAGAGTATGCCTAATAT
1 CCTAGAGTATACCTAATAT
3317434 CCTAGAGTATACTCTAATA
1 CCTAGAGTATAC-CTAATA
3317453 CCAACTGACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (19 bp):
CCTAGAGTATACCTAATAT
Found at i:3317751 original size:20 final size:20
Alignment explanation
Indices: 3317726--3317772 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
3317716 ATGACATTTG
3317726 AGATCAAAAAAAGATTATGA
1 AGATCAAAAAAAGATTATGA
*
3317746 AGATCAAAAAAAGATTATGG
1 AGATCAAAAAAAGATTATGA
3317766 AGATCAA
1 AGATCAA
3317773 GGCCTCCAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.57, C:0.06, G:0.17, T:0.19
Consensus pattern (20 bp):
AGATCAAAAAAAGATTATGA
Found at i:3341715 original size:4 final size:4
Alignment explanation
Indices: 3341706--3341730 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
3341696 TAGCAGTTAT
3341706 TGTA TGTA TGTA TGTA TGTA TGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA T
3341731 ATCATTGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TGTA
Found at i:3347734 original size:2 final size:2
Alignment explanation
Indices: 3347682--3347716 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
3347672 CCTATCTGAG
3347682 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
3347717 CTTATATTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:3358234 original size:2 final size:2
Alignment explanation
Indices: 3358227--3358252 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
3358217 ACATACATAC
3358227 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
3358253 CATTTGCTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3367433 original size:2 final size:2
Alignment explanation
Indices: 3367428--3367453 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
3367418 ATATATATAT
3367428 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
3367454 CAGAATTAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:3368799 original size:2 final size:2
Alignment explanation
Indices: 3368792--3368817 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
3368782 CTATATTGAA
3368792 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
3368818 GTGCGTGAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3370443 original size:24 final size:27
Alignment explanation
Indices: 3370409--3370463 Score: 71
Period size: 25 Copynumber: 2.1 Consensus size: 27
3370399 AAATTTTAAA
*
3370409 AAATAAGA-TTTAAAAT-TTAA-AATT
1 AAATAAAATTTTAAAATGTTAATAATT
*
3370433 AAATAAAATTTTAAAATGTTAATATTT
1 AAATAAAATTTTAAAATGTTAATAATT
3370460 AAAT
1 AAAT
3370464 TATTAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 7 0.27
25 8 0.31
26 4 0.15
27 7 0.27
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (27 bp):
AAATAAAATTTTAAAATGTTAATAATT
Found at i:3370464 original size:39 final size:39
Alignment explanation
Indices: 3370399--3370486 Score: 90
Period size: 39 Copynumber: 2.3 Consensus size: 39
3370389 TTTTAATTAT
3370399 AAATTTTAAAAAATAAGATTTAAAATT-TAAAATTAAATA
1 AAATTTTAAAAAATAAGATTTAAAATTATAAAATT-AATA
** * * *
3370438 AAATTTTAAAATGTTAATATTT-AAATTATTAAATTATTA
1 AAATTTTAAAA-AATAAGATTTAAAATTATAAAATTAATA
*
3370477 ATATTTTAAA
1 AAATTTTAAA
3370487 TTTGAATGAA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
39 28 0.68
40 13 0.32
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (39 bp):
AAATTTTAAAAAATAAGATTTAAAATTATAAAATTAATA
Found at i:3370469 original size:23 final size:23
Alignment explanation
Indices: 3370438--3370489 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
3370428 AAATTAAATA
*
3370438 AAATTTTAAAATGTTAATA-TTT
1 AAATTTTAAAATATTAATATTTT
*
3370460 AAATTATTAAATTATTAATATTTT
1 AAATT-TTAAAATATTAATATTTT
3370484 AAATTT
1 AAATTT
3370490 GAATGAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 5 0.19
23 13 0.50
24 8 0.31
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (23 bp):
AAATTTTAAAATATTAATATTTT
Found at i:3379669 original size:2 final size:2
Alignment explanation
Indices: 3379625--3379651 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
3379615 ATTATACCAT
3379625 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
3379652 TTGTATACCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:3396756 original size:29 final size:29
Alignment explanation
Indices: 3396709--3396774 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
3396699 AATTTTAAAA
* * *
3396709 TTTTTTATTTTTTTATTAAATTCAATTAAG
1 TTTTATATTTTTGTATTAAATT-AAATAAG
3396739 TTTTATATTTTTGT-TTAAATTAAATAAG
1 TTTTATATTTTTGTATTAAATTAAATAAG
3396767 TATTTATA
1 T-TTTATA
3396775 ACTTATGCCT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 7 0.22
29 13 0.41
30 12 0.38
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.61
Consensus pattern (29 bp):
TTTTATATTTTTGTATTAAATTAAATAAG
Found at i:3396941 original size:18 final size:18
Alignment explanation
Indices: 3396920--3396954 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
3396910 ATATGTTATT
3396920 TTAATTAATAATAATAAA
1 TTAATTAATAATAATAAA
* *
3396938 TTAATTATTAATGATAA
1 TTAATTAATAATAATAA
3396955 GGACATATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (18 bp):
TTAATTAATAATAATAAA
Found at i:3397341 original size:23 final size:22
Alignment explanation
Indices: 3397311--3397353 Score: 77
Period size: 23 Copynumber: 1.9 Consensus size: 22
3397301 TACTTTTTAG
3397311 AATAATAATAATAATATATTTTC
1 AATAATAATAATAATA-ATTTTC
3397334 AATAATAATAATAATAATTT
1 AATAATAATAATAATAATTT
3397354 AGATTTTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (22 bp):
AATAATAATAATAATAATTTTC
Found at i:3397848 original size:26 final size:26
Alignment explanation
Indices: 3397817--3397876 Score: 102
Period size: 26 Copynumber: 2.3 Consensus size: 26
3397807 AATGTCATCC
*
3397817 TGAATGAGTCGGCTAGGGTTTTGTCA
1 TGAATGAGTCGGCTAGGGGTTTGTCA
3397843 TGAATGAGTCGGCTAGGGGTTTGTCA
1 TGAATGAGTCGGCTAGGGGTTTGTCA
*
3397869 TCAATGAG
1 TGAATGAG
3397877 CTTCTGATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.22, C:0.12, G:0.35, T:0.32
Consensus pattern (26 bp):
TGAATGAGTCGGCTAGGGGTTTGTCA
Found at i:3405916 original size:3 final size:3
Alignment explanation
Indices: 3405908--3405933 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
3405898 GGCAGTGGGG
3405908 GCT GCT GCT GCT GCT GCT GCT GCT GC
1 GCT GCT GCT GCT GCT GCT GCT GCT GC
3405934 ATTACTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.35, T:0.31
Consensus pattern (3 bp):
GCT
Found at i:3409045 original size:21 final size:19
Alignment explanation
Indices: 3409021--3409078 Score: 61
Period size: 16 Copynumber: 3.1 Consensus size: 19
3409011 TTATTTAAAA
3409021 AACTTAAAAATATTAATATTT
1 AACTT-AAAATA-TAATATTT
3409042 AAC-TAAAA-A-AAT-TTT
1 AACTTAAAATATAATATTT
3409057 AACTTAAAATAATAATATTT
1 AACTTAAAAT-ATAATATTT
3409077 AA
1 AA
3409079 ATTATTCAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
15 6 0.19
16 8 0.25
18 2 0.06
19 7 0.22
20 6 0.19
21 3 0.09
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
AACTTAAAATATAATATTT
Found at i:3410189 original size:2 final size:2
Alignment explanation
Indices: 3410182--3410207 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
3410172 GGAAGTAAAA
3410182 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
3410208 CTACACCTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:3412067 original size:21 final size:20
Alignment explanation
Indices: 3412037--3412083 Score: 76
Period size: 21 Copynumber: 2.3 Consensus size: 20
3412027 TAAATTTATA
3412037 TTTTAAAAATATTTAAATAT
1 TTTTAAAAATATTTAAATAT
3412057 TTTTGAAAAATATTTAAATAT
1 TTTT-AAAAATATTTAAATAT
*
3412078 TATTAA
1 TTTTAA
3412084 TATATAGATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 6 0.24
21 19 0.76
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (20 bp):
TTTTAAAAATATTTAAATAT
Found at i:3415480 original size:12 final size:13
Alignment explanation
Indices: 3415456--3415490 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
3415446 ACAGTATTTG
3415456 ATATATAAATAAA
1 ATATATAAATAAA
*
3415469 ATA-ATAATTAAA
1 ATATATAAATAAA
3415481 ATATATAAAT
1 ATATATAAAT
3415491 GATAATATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
ATATATAAATAAA
Found at i:3415676 original size:11 final size:12
Alignment explanation
Indices: 3415648--3415691 Score: 53
Period size: 11 Copynumber: 4.1 Consensus size: 12
3415638 TTTAATGTCA
3415648 TATATTTTATTT
1 TATATTTTATTT
3415660 TA-ATTTT-TTT
1 TATATTTTATTT
3415670 TATATTTTA---
1 TATATTTTATTT
3415679 TATATTTTATTT
1 TATATTTTATTT
3415691 T
1 T
3415692 CATTTCTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 10
0.73 0.00 0.27
Matches are distributed among these distances:
9 9 0.33
10 5 0.19
11 10 0.37
12 3 0.11
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (12 bp):
TATATTTTATTT
Found at i:3415685 original size:31 final size:31
Alignment explanation
Indices: 3415647--3415731 Score: 91
Period size: 31 Copynumber: 2.6 Consensus size: 31
3415637 TTTTAATGTC
**
3415647 ATATATTTTATTTTAATTTTTTTTAT-ATTTT
1 ATATATTTTATTTT-ATTTTTAATATAATTTT
3415678 ATATATTTTATTTTCATTTCTTAATATAATTTT
1 ATATATTTTATTTT-ATTT-TTAATATAATTTT
*
3415711 CTATATTATATATTTTATTTT
1 ATATATT-T-TATTTTATTTT
3415732 AATTTTTTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
31 18 0.39
32 5 0.11
33 12 0.26
34 5 0.11
35 6 0.13
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68
Consensus pattern (31 bp):
ATATATTTTATTTTATTTTTAATATAATTTT
Found at i:3416414 original size:2 final size:2
Alignment explanation
Indices: 3416407--3416443 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
3416397 CAATTATAAA
* *
3416407 AT AT AT AT AT AT AT AT AT AT AT AT AT GT TT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
3416444 CACTATCAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
AT
Found at i:3425111 original size:2 final size:2
Alignment explanation
Indices: 3425104--3425147 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
3425094 CTATAACGCC
*
3425104 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3425146 AT
1 AT
3425148 GTTGTTATTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:3427647 original size:19 final size:20
Alignment explanation
Indices: 3427625--3427664 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
3427615 GGTTTTTCAA
*
3427625 ACTTTTCAT-ACATTTTTTT
1 ACTTTTAATAACATTTTTTT
*
3427644 ACTTTTAATAATATTTTTTT
1 ACTTTTAATAACATTTTTTT
3427664 A
1 A
3427665 TATAATTAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.28, C:0.10, G:0.00, T:0.62
Consensus pattern (20 bp):
ACTTTTAATAACATTTTTTT
Found at i:3428140 original size:2 final size:2
Alignment explanation
Indices: 3428133--3428173 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
3428123 ATCTAATCTT
3428133 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
3428174 GTATGTATGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:3428412 original size:23 final size:23
Alignment explanation
Indices: 3428363--3428412 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
3428353 ATGCCTCAAT
* * * *
3428363 TTTAATTTTTTTTGTTTTCTTTT
1 TTTAATTTTTTTTATTTTATATA
3428386 TTTAATTTTTTTTATTTTATATA
1 TTTAATTTTTTTTATTTTATATA
3428409 TTTA
1 TTTA
3428413 CTAATATATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.78
Consensus pattern (23 bp):
TTTAATTTTTTTTATTTTATATA
Found at i:3428851 original size:20 final size:22
Alignment explanation
Indices: 3428805--3428851 Score: 53
Period size: 20 Copynumber: 2.2 Consensus size: 22
3428795 GTACTTAATT
*
3428805 ATTTATATTTTATGTATTACAC
1 ATTTATATTTTATGTATTACAA
* *
3428827 TTTTATA-TTTA-GTATTATAA
1 ATTTATATTTTATGTATTACAA
3428847 ATTTA
1 ATTTA
3428852 AATAAAAATA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
20 11 0.52
21 4 0.19
22 6 0.29
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.57
Consensus pattern (22 bp):
ATTTATATTTTATGTATTACAA
Found at i:3434328 original size:29 final size:30
Alignment explanation
Indices: 3434285--3434343 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
3434275 CATTACATGA
**
3434285 TGTTACACATCATATTGAAAAA-ATGTTAT
1 TGTTACACATCATATACAAAAATATGTTAT
* *
3434314 TGTTACACGTTATATACAAAAATATGTTAT
1 TGTTACACATCATATACAAAAATATGTTAT
3434344 ACACTATGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 18 0.72
30 7 0.28
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (30 bp):
TGTTACACATCATATACAAAAATATGTTAT
Found at i:3437290 original size:15 final size:15
Alignment explanation
Indices: 3437270--3437314 Score: 65
Period size: 15 Copynumber: 3.0 Consensus size: 15
3437260 TTTTTAATCT
3437270 AGAGAATAAGTGCTG
1 AGAGAATAAGTGCTG
*
3437285 AGAGAATAAATGCT-
1 AGAGAATAAGTGCTG
3437299 ATGAGAATAAGTGCTG
1 A-GAGAATAAGTGCTG
3437315 TGCTATAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
14 1 0.04
15 25 0.96
ACGTcount: A:0.42, C:0.07, G:0.29, T:0.22
Consensus pattern (15 bp):
AGAGAATAAGTGCTG
Found at i:3438224 original size:248 final size:248
Alignment explanation
Indices: 3437898--3438513 Score: 644
Period size: 253 Copynumber: 2.5 Consensus size: 248
3437888 TTTATATTTA
* *
3437898 AAATTTAGTTATTCCACCTTTATAGTTTTTACGTCAATTGTTACAGTTTTACGTCAAGATTTATC
1 AAATTTAATTATTCCACCTTTATAGTTTTTACGTCAACTGTTACAGTTTTACGTCAAGATTTATC
* * *
3437963 TATGATAATTTTGAGCTATAATAATT-TTTATTGTTATTTTTATTT-AAAAAT-CAAAATTTATA
66 TATGATAATTTTGAACTATAATAATTATTTATTATTATATTTATTTAAAAAATACAAAATTTATA
*
3438025 TATTCGTT-AAACACATTT-A-GC-TGAAAAAATATATTTAAAT-TTATTTTTCACTAAAATATA
131 TA-TCGTTAAAACACATTTAATCCATG--AAAATATATTTAAATATTATTTTTCACTAAAATATA
* *
3438085 TAATTTTTTATT-AAATTGACTTGTTACATTAACTCTCACATATTTACGTTAAGATTC
193 -AATTTTTT-TTCAAATGGACTTGTTACATTAACTCTCACACATTTACGTTAAGATTC
* * * *
3438142 AAATTTAATTATTTCATCTTTATATGTTTTTACGTTCGACTGTTTACAGTTTTTACGTTAAGATT
1 AAATTTAATTATTCCACCTTTATA-GTTTTTACG-TCAACTG-TTACAG-TTTTACGTCAAGATT
* * * *
3438207 TATCTATGTTCATTTTGAACTATAATTATTATTTATTATTATATTTATTTAAAAAATATAAAATT
62 TATCTATGATAATTTTGAACTATAATAATTATTTATTATTATATTTATTTAAAAAATACAAAATT
* * * *
3438272 TATATATGGTTAAAACACTTTTAATCCATGAATATATATTTAAATATTATTTTTCACTAAAATGT
127 TATATATCGTTAAAACACATTTAATCCATGAAAATATATTTAAATATTATTTTTCACTAAAATAT
* * * * *
3438337 AGATTTTTTTTCCTAATGGACTTGTTACGTTAACTCTCACACGTTTACGTTAAGATTTA
192 AAATTTTTTTT-CAAATGGACTTGTTACATTAACTCTCACACATTTACGTTAAGA-TTC
* * * * ** * * * * **
3438396 AAAGTTAGTTATTCTACTTTTATAAATTTTACGTCAATTCTTACAGTTTTATGTTAA-AACTATC
1 AAATTTAATTATTCCACCTTTATAGTTTTTACGTCAACTGTTACAGTTTTACGTCAAGATTTATC
* * *
3438460 TATG-TCAATTTT-ATCTTATAATTATTATTTATTCTTATTATTTTTATTTAAAAA
66 TATGAT-AATTTTGAAC-TATAATAATTATTTA---TTATTATATTTATTTAAAAA
3438514 TTAATATTGT
Statistics
Matches: 310, Mismatches: 42, Indels: 32
0.81 0.11 0.08
Matches are distributed among these distances:
244 21 0.07
245 9 0.03
246 5 0.02
247 6 0.02
248 43 0.14
249 46 0.15
250 20 0.06
251 29 0.09
252 45 0.15
253 64 0.21
254 22 0.07
ACGTcount: A:0.34, C:0.10, G:0.07, T:0.49
Consensus pattern (248 bp):
AAATTTAATTATTCCACCTTTATAGTTTTTACGTCAACTGTTACAGTTTTACGTCAAGATTTATC
TATGATAATTTTGAACTATAATAATTATTTATTATTATATTTATTTAAAAAATACAAAATTTATA
TATCGTTAAAACACATTTAATCCATGAAAATATATTTAAATATTATTTTTCACTAAAATATAAAT
TTTTTTTCAAATGGACTTGTTACATTAACTCTCACACATTTACGTTAAGATTC
Found at i:3438495 original size:19 final size:18
Alignment explanation
Indices: 3438469--3438509 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
3438459 CTATGTCAAT
3438469 TTTATCTTATAATTATTA
1 TTTATCTTATAATTATTA
* *
3438487 TTTATTCTTATTATTTTTA
1 TTTA-TCTTATAATTATTA
3438506 TTTA
1 TTTA
3438510 AAAATTAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTATCTTATAATTATTA
Found at i:3438892 original size:247 final size:246
Alignment explanation
Indices: 3437626--3438967 Score: 1067
Period size: 248 Copynumber: 5.4 Consensus size: 246
3437616 TAATTGTTAT
* * * ** *
3437626 GTTAACTCTCACATATTTA-CGATAAGATTT-AACTTTTTTTATTTCACTTTTATAAGATTTATA
1 GTTAACTCTCACACATTTATCGTTAAGATTTAAAATTTAGTTATTT-ACTTTTATAAG-TTTTTA
** * *
3437689 --TTAATTCTTACAACTTTACGTCAA-ATCTT-TCAAT-AGT-AACTTTTAACTATAATTATCTT
64 CGTTAATTCTTACAGTTTTACGTTAAGA-CTTATCTATGA-TCAA-TTTTAACTATAATTAT-TT
* * * * *
3437748 TATTTTATTATTCTTTATTT-AAAA-TAAATTTAAATTATCGTTGCATAC-TTTAACCCGATAAT
125 TATATTATTATT-TTTATTTAAAAATTAAATTTATA-TATCGTTACATACTTTTAGCTCGATAAT
* *
3437810 ATAAATATAA-AGTTATTTTTCATTTAAATTAGA-TTTTTTACTTAATTAACTTATTAC
188 ATAAATATAATACTTATTTTTCATTAAAATTAGACTTTTTTACTTAATTAACTTATTAC
* * * * * *
3437867 GTTAACTCTAATACATTTAT-GTTTATATTTAAAATTTAGTTATTCCACCTTTAT-AGTTTTTAC
1 GTTAACTCTCACACATTTATCGTTAAGATTTAAAATTTAGTTATT-TACTTTTATAAGTTTTTAC
* * * * * *
3437930 GTCAATTGTTACAGTTTTACGTCAAGATTTATCTATGAT-AATTTTGAGCTATAATAATTTT-TA
65 GTTAATTCTTACAGTTTTACGTTAAGACTTATCTATGATCAATTTT-AACTATAATTATTTTATA
* * * * * * * *
3437993 TTGTTATTTTTATTTAAAAATCAAAATTTATATATTCGTTAAACACATTTAGCT-GAAAAAATAT
129 TTATTATTTTTATTTAAAAAT-TAAATTTATATA-TCGTTACATACTTTTAGCTCGATAATATAA
* * * * * * *
3438057 ATTTAA-ATTTATTTTTCACTAAAATATATAATTTTTTA-TTAAATTGACTTGTTAC
192 ATATAATACTTATTTTTCATTAAAAT-TAGACTTTTTTACTT-AATTAACTTATTAC
* * * * *
3438112 ATTAACTCTCACATATTTA-CGTTAAGA-TTCAAATTTAATTATTT-CATCTTTATATGTTTTTA
1 GTTAACTCTCACACATTTATCGTTAAGATTTAAAATTTAGTTATTTAC-T-TTTATAAGTTTTTA
* * *
3438174 CGTTCGACTGT-TTACAGTTTTTACGTTAAGATTTATCTATGTTC-ATTTTGAACTATAATTATT
64 CGTT--AAT-TCTTACAG-TTTTACGTTAAGACTTATCTATGATCAATTTT-AACTATAATTATT
* * * * * *
3438237 ATT-TATTATTATATTTATTTAAAAAATATAAAATTTATATATGGTTAAAACACTTTTA-ATCCA
124 -TTATATTATTATTTTTATTT-AAAAAT-T-AAATTTATATATCGTT-ACATACTTTTAGCTCGA
* * * * * * ** *
3438300 TGAATATATATTTAAATA-TTATTTTTCACTAAAATGTAGATTTTTTTTCCTAATGGACTTGTTA
184 T-AATATAAATAT-AATACTTATTTTTCATTAAAAT-TAGACTTTTTTACTTAATTAACTTATTA
3438364 C
246 C
* * *
3438365 GTTAACTCTCACACGTTTA-CGTTAAGATTTAAAAGTTAGTTATTCTACTTTTATAA-ATTTTAC
1 GTTAACTCTCACACATTTATCGTTAAGATTTAAAATTTAGTTATT-TACTTTTATAAGTTTTTAC
* * * *
3438428 GTCAATTCTTACAGTTTTATGTTAAAAC-TATCTATG-TCAATTTTATCTTATAATTATTATTTA
65 GTTAATTCTTACAGTTTTACGTTAAGACTTATCTATGATCAATTTTAAC-TATAATTA-T-TTTA
* * * **
3438491 TTCTTATTATTTTTATTTAAAAATT-AATAT-TGTATCGTTACATAAACTTTTAGCTTTATAATA
127 -TATTATTATTTTTATTTAAAAATTAAATTTATATATCGTTACAT--ACTTTTAGCTCGATAATA
* * *
3438554 TAAATACAAATACTTATTTTT-ATTTAAAATTAGACTTTTATACTTAATTAACTTATCAC
189 TAAATA-TAATACTTATTTTTCA-TTAAAATTAGACTTTTTTACTTAATTAACTTATTAC
* * **
3438613 AATTAACTTTCACATGTTTA-CGTTAA-ATTTAAAATTTAGTTATTTACTTTTATAAGTTTTTAC
1 -GTTAACTCTCACACATTTATCGTTAAGATTTAAAATTTAGTTATTTACTTTTATAAGTTTTTAC
*
3438676 GTTAATTCTTACAGTTTTACGTTAAGACTTATCCTATG-TCATTTTTAACCTATAATTATTTTAT
65 GTTAATTCTTACAGTTTTACGTTAAGACTTAT-CTATGATCAATTTTAA-CTATAATTATTTTAT
* * *
3438740 CCTTATTATTTTTA-TTAAAAATTAAATTTGTATATTGTTACATACTTTTAGCTCGATAATATAA
128 -ATTATTATTTTTATTTAAAAATTAAATTTATATATCGTTACATACTTTTAGCTCGATAATATAA
* *
3438804 ATATAATACCTA-TTTTCATTAAAATTAGACTTTTTTACTTAATTAACTTATTAT
192 ATATAATACTTATTTTTCATTAAAATTAGACTTTTTTACTTAATTAACTTATTAC
* * * * * * *
3438858 GTTAACATCTTACACATTTATGGTTAAGATTTAAAATTTAATTAATCACTATTATAAGTTTTTAA
1 GTTAAC-TCTCACACATTTATCGTTAAGATTTAAAATTTAGTTATTTACTTTTATAAGTTTTTAC
* * * *
3438923 GTTAATTTTTACAGTTTTATGTCAAGACCTT-TTTATG-TCAATTTT
65 GTTAATTCTTACAGTTTTACGTTAAGA-CTTATCTATGATCAATTTT
3438968 TAAATGATTA
Statistics
Matches: 893, Mismatches: 144, Indels: 123
0.77 0.12 0.11
Matches are distributed among these distances:
240 12 0.01
241 37 0.04
242 49 0.05
243 62 0.07
244 35 0.04
245 95 0.11
246 26 0.03
247 115 0.13
248 162 0.18
249 92 0.10
250 48 0.05
251 38 0.04
252 25 0.03
253 73 0.08
254 21 0.02
255 2 0.00
256 1 0.00
ACGTcount: A:0.34, C:0.11, G:0.06, T:0.49
Consensus pattern (246 bp):
GTTAACTCTCACACATTTATCGTTAAGATTTAAAATTTAGTTATTTACTTTTATAAGTTTTTACG
TTAATTCTTACAGTTTTACGTTAAGACTTATCTATGATCAATTTTAACTATAATTATTTTATATT
ATTATTTTTATTTAAAAATTAAATTTATATATCGTTACATACTTTTAGCTCGATAATATAAATAT
AATACTTATTTTTCATTAAAATTAGACTTTTTTACTTAATTAACTTATTAC
Found at i:3439961 original size:15 final size:15
Alignment explanation
Indices: 3439938--3439968 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3439928 ATTTTTAAAC
3439938 TTATAATTATTTTTA
1 TTATAATTATTTTTA
*
3439953 TTATTATTATTTTTA
1 TTATAATTATTTTTA
3439968 T
1 T
3439969 AAAAATTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TTATAATTATTTTTA
Found at i:3443448 original size:29 final size:30
Alignment explanation
Indices: 3443384--3443449 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 30
3443374 TACAAAAAGA
3443384 TATTACACGTTATATTAAAAAAAATATCAT
1 TATTACACGTTATATTAAAAAAAATATCAT
* * **
3443414 TGTTACACGTTATATT-AACAAAATATTGT
1 TATTACACGTTATATTAAAAAAAATATCAT
3443443 TATTACA
1 TATTACA
3443450 TGTCATGTTC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
29 16 0.52
30 15 0.48
ACGTcount: A:0.44, C:0.11, G:0.06, T:0.39
Consensus pattern (30 bp):
TATTACACGTTATATTAAAAAAAATATCAT
Found at i:3448856 original size:159 final size:158
Alignment explanation
Indices: 3448575--3448866 Score: 476
Period size: 159 Copynumber: 1.8 Consensus size: 158
3448565 GAGATACATT
*
3448575 ACTTTCTTCTCCATAGACAAGGCAAACCAAATAGTCATAAATAGGAAAAACCTCATGGTAACCTC
1 ACTTTCTTCTCCATAGACAAGGCAAACCAAACAGTCATAAATAGGAAAAACCTCATGGTAACCTC
* * *
3448640 TAGAATATAACAATGTATATAGCACAAGCAATCAAACATTTTAAACTGATTGCTCTAATTTTCAC
66 TAGAATATAACAATGTAAAGAGCACAAGCAATCAAACATTTTAAACTGATTGCTCTAATTATCAC
3448705 CTTTGAGAATATATGTCCCTGATACAGA
131 CTTTGAGAATATATGTCCCTGATACAGA
* * * *
3448733 ACTTTCTTCTCCATAGACAAGGCACACCAAACAGTCGTAAATTGGAAAGAACCTCATTGTAACCT
1 ACTTTCTTCTCCATAGACAAGGCAAACCAAACAGTCATAAATAGGAAA-AACCTCATGGTAACCT
* * *
3448798 CTAGAATATGACAATGTAAAGAGCACAAGCAATCAAATATTTTAAACTGATTGTTCTAATTATCA
65 CTAGAATATAACAATGTAAAGAGCACAAGCAATCAAACATTTTAAACTGATTGCTCTAATTATCA
3448863 CCTT
130 CCTT
3448867 GGTTACCCAT
Statistics
Matches: 122, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
158 44 0.36
159 78 0.64
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.28
Consensus pattern (158 bp):
ACTTTCTTCTCCATAGACAAGGCAAACCAAACAGTCATAAATAGGAAAAACCTCATGGTAACCTC
TAGAATATAACAATGTAAAGAGCACAAGCAATCAAACATTTTAAACTGATTGCTCTAATTATCAC
CTTTGAGAATATATGTCCCTGATACAGA
Found at i:3470565 original size:28 final size:26
Alignment explanation
Indices: 3470528--3470593 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
3470518 AATAAATATC
*
3470528 TTTAAATAAAAAATATATATTTATATTT
1 TTTAAATAAAAAATATA-AATT-TATTT
* *
3470556 TTTAATTAAAAAATTTAAATTTATTT
1 TTTAAATAAAAAATATAAATTTATTT
3470582 TTTAAATAAAAA
1 TTTAAATAAAAA
3470594 TTTATGTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 16 0.47
27 3 0.09
28 15 0.44
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (26 bp):
TTTAAATAAAAAATATAAATTTATTT
Found at i:3470580 original size:26 final size:28
Alignment explanation
Indices: 3470528--3470598 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
3470518 AATAAATATC
* *
3470528 TTTAAATAAAAAATATATATTTATATTT
1 TTTAAATAAAAAATTTATAATTATATTT
*
3470556 TTTAATTAAAAAATTTA-AATT-TATTT
1 TTTAAATAAAAAATTTATAATTATATTT
3470582 TTTAAAT-AAAAATTTAT
1 TTTAAATAAAAAATTTAT
3470599 GTATTAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
25 9 0.24
26 11 0.29
27 3 0.08
28 15 0.39
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (28 bp):
TTTAAATAAAAAATTTATAATTATATTT
Found at i:3470605 original size:19 final size:20
Alignment explanation
Indices: 3470571--3470615 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
3470561 TTAAAAAATT
* *
3470571 TAAATTTATTTTTTAAATAA
1 TAAATTTATGTATTAAATAA
*
3470591 -AAATTTATGTATTAATTAA
1 TAAATTTATGTATTAAATAA
3470610 TAAATT
1 TAAATT
3470616 AAATATTTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (20 bp):
TAAATTTATGTATTAAATAA
Found at i:3483457 original size:20 final size:19
Alignment explanation
Indices: 3483427--3483468 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
3483417 GTGAAATAAT
*
3483427 TAAATTTTAAATCTTAACA
1 TAAATTTTAAAACTTAACA
*
3483446 TAAATATTTAAAAGTTAACA
1 TAAAT-TTTAAAACTTAACA
3483466 TAA
1 TAA
3483469 TAAATTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.38
Consensus pattern (19 bp):
TAAATTTTAAAACTTAACA
Found at i:3483672 original size:233 final size:240
Alignment explanation
Indices: 3483296--3484565 Score: 1004
Period size: 250 Copynumber: 5.2 Consensus size: 240
3483286 TAAAAATGGT
* * * *
3483296 TAACAATATAAAAATTTTAATTTTTAAATAAAGAATAATATTG-A-AAAAA-AATTATAGTTCAA
1 TAACAACATATAAATTTTAATTTTTAAATAAAAAATAATA-AGAATAAAAATAATTATAGTTCAA
* * * *
3483358 TATTGACATATATAAGCCTTGAA-GTAAAAATATAAAAATTGACGTACAAACTTATAAAGGTGAA
65 TATTGACATAGATAAGCCTT-AACATAAAACTATAAAAATTGACGTAAAAACTTATAAAGGTGAA
* * * *
3483422 ATAATTAAATTTTAAATCTTAACATAAATA-T-T-TAA-AAGTTAA-CA-TAATAAA-TTAATTT
129 ATAACTAAATTTTAAATCTTAACGTAAATAGTATATAATAAGTTAATAAGTAAAAAATTTAATTT
* * * *
3483480 TAATAAAAAATAAACATTTATATTTATATTATCGGGTTGAAATTATG
194 TAATAAAAAATAAACATTTATATTTATATTATCGAGTTAAAAGTATA
** * *
3483527 TAATGATAT-TCAAATTTTTATTTTTAAATAAAAAATAATAAGAATAAAAATAATTATCA-TTCA
1 TAACAACATAT-AAATTTTAATTTTTAAATAAAAAATAATAAGAATAAAAATAATTAT-AGTTCA
* * * * * *
3483590 AAATTTACATA-AAAAGGCCTTAACATAAAACTATAAAAATTGACATAAAAACTTATAATGGTGG
64 ATATTGACATAGATAA-GCCTTAACATAAAACTATAAAAATTGACGTAAAAACTTATAAAGGTGA
*
3483654 ATTAACTAAATTTTAAATCTTAACGTAAATGTGTGATAGTTAATATAATAAGTTAATTAAGTAAA
128 AATAACTAAATTTTAAATCTTAACGT-AA------ATAG-T-ATATAATAAGTTAA-TAAGTAAA
* *
3483719 AAATTTTAATTTTAATGAAAAATAATCATTTATATTTATATTATCGAGTTAAAAGTATA
183 AAA-TTTAATTTTAATAAAAAATAAACATTTATATTTATATTATCGAGTTAAAAGTATA
*
3483778 TAACAACATATAAATTTTAATTTTTAAAT-AAAAATAATAA-AGATAAAAATAATTATAGTTTAA
1 TAACAACATATAAATTTTAATTTTTAAATAAAAAATAATAAGA-ATAAAAATAATTATAGTTCAA
* * * *
3483841 TATTGACATAGATAAGTCTTAACATAAAAC-AGTAAGAATTAACGTAAAAACTTATAAAAGTGAA
65 TATTGACATAGATAAGCCTTAACATAAAACTA-TAAAAATTGACGTAAAAACTTATAAAGGTGAA
* * * *
3483905 ATAACTAAATATTAAATCTTAACGTAAACGT-GTGAGAGTTAACGTAACAAATCAATTAAGTAAA
129 ATAACTAAATTTTAAATCTTAACGTAAA--TAGT---A--T-A--TAATAAGTTAA-TAAGT-AA
* * * * * * ** * *
3483969 AAAATATAATTTTAGTAAAAAATAAATATTTAAATTTATATTTTCAAACTAAAAGTGTT
182 AAAATTTAATTTTAATAAAAAATAAACATTTATATTTATATTATCGAGTTAAAAGTATA
* * * * * * * *
3484028 TAACGATATACAAATTTTATTTTTTAAATAAAGAATAATAAGGATTAAAATAATTATAGTT-TAT
1 TAACAACATATAAATTTTAATTTTTAAATAAAAAATAATAAGAATAAAAATAATTATAGTTCAAT
* * * ** * * * * * * *
3484092 AATGGATATAGAAAAATCTTGACGTAAAATTATAAGAATTAACGTAAAAACTTATAAAGTTAAAA
66 -ATTGACATAGATAAGCCTTAACATAAAACTATAAAAATTGACGTAAAAACTTATAAAGGTGAAA
* * *
3484157 TAATTAAATTTTAAATCATAACATAAATA-TATGAGAGTTAATATAGCAAGTTAATTAAGTAAAA
130 TAACTAAATTTTAAATCTTAACGTAAATAGTAT---A--T-A-AT---AAGTTAA-TAAGT-AAA
* * * * * * * *
3484221 AAATTTAATTTTATTGAAAAATAAATATTTAAATTTATATTTTAGA-ATAAAAGTATT
183 AAATTTAATTTTAATAAAAAATAAACATTTATATTTATATTATCGAGTTAAAAGTATA
* * *
3484278 TAACGATATATAAATTTTAATTTTTAAAT-AAAAATAATAA-AGATAAAAATAATTATAGTTTAA
1 TAACAACATATAAATTTTAATTTTTAAATAAAAAATAATAAGA-ATAAAAATAATTATAGTTCAA
* * * * * *
3484341 AATTGACATAGATAAGTCTTAACGTAAAACTGTAAGAATTGACGTAAAAACTTATAAAGGTGGAA
65 TATTGACATAGATAAGCCTTAACATAAAACTATAAAAATTGACGTAAAAACTTATAAAGGTGAAA
* * *
3484406 TAACTAAATTTTAAATCCTAACGTAAATGTGTGAGAGTTAACGTAATAAATTAATTAAGTAAAAA
130 TAACTAAATTTTAAATCTTAACGTAAAT-AGT---A--T-A--TAATAAGTTAA-TAAGT-AAAA
** * *
3484471 AATTTAATTTTAATAAAAAATAAGTATTTATATTTATATTATCGAGCTAAAAGTATG
184 AATTTAATTTTAATAAAAAATAAACATTTATATTTATATTATCGAGTTAAAAGTATA
* *
3484528 TAACGATATATAAATTTTAATTTTTAAAT-AAAAATAAT
1 TAACAACATATAAATTTTAATTTTTAAATAAAAAATAAT
3484566 TATAGTATAA
Statistics
Matches: 849, Mismatches: 128, Indels: 105
0.78 0.12 0.10
Matches are distributed among these distances:
230 1 0.00
231 35 0.04
232 10 0.01
233 81 0.10
234 3 0.00
240 3 0.00
242 1 0.00
243 2 0.00
244 3 0.00
245 5 0.01
246 10 0.01
247 2 0.00
248 3 0.00
249 174 0.20
250 268 0.32
251 239 0.28
252 4 0.00
253 1 0.00
254 3 0.00
256 1 0.00
ACGTcount: A:0.50, C:0.05, G:0.09, T:0.36
Consensus pattern (240 bp):
TAACAACATATAAATTTTAATTTTTAAATAAAAAATAATAAGAATAAAAATAATTATAGTTCAAT
ATTGACATAGATAAGCCTTAACATAAAACTATAAAAATTGACGTAAAAACTTATAAAGGTGAAAT
AACTAAATTTTAAATCTTAACGTAAATAGTATATAATAAGTTAATAAGTAAAAAATTTAATTTTA
ATAAAAAATAAACATTTATATTTATATTATCGAGTTAAAAGTATA
Found at i:3483752 original size:251 final size:249
Alignment explanation
Indices: 3483473--3484901 Score: 1419
Period size: 250 Copynumber: 5.8 Consensus size: 249
3483463 ACATAATAAA
* * * * * *
3483473 TTAATTTTAATAAAAAATAAACATTTATATTTATATTATCGGGTTGAAATTATGTAATGATAT-T
1 TTAATTTTAATAAAAAAT-AATATTTATATTTATATTATCGAGCTAAAAGTATGTAACGATATAT
* * *
3483537 CAAATTTTTATTTTTAAATAAAAAATAAT-AAGAATAAAAATAATTATCA-TTCAAAATTTACAT
65 -AAATTTTAATTTTTAAAT-AAAAATAATAAAG-ATAAAAATAATTAT-AGTTTAAAATTGACAT
* * * * * * *
3483600 A-AAAAGGCCTTAACATAAAACTATAAAAATTGACATAAAAACTTATAATGGTGGATTAACTAAA
126 AGAAAA-GTCTTAACATAAAACTATAAGAATTAACGTAAAAACTTATAAAGGTGAAATAACTAAA
* * * * *
3483664 TTTTAAATCTTAACGTAAATGTGTGATAGTTAATATAATAAGTTAATTAAGTAAAAAATT
190 TTTTAAATCTTAACGTAAATGTGTGAGAGTTAACATAACAAATTAATTAAGTAAAAAAAT
* * * * *
3483724 TTAATTTTAATGAAAAATAATCATTTATATTTATATTATCGAGTTAAAAGTATATAACAACATAT
1 TTAATTTTAATAAAAAATAAT-ATTTATATTTATATTATCGAGCTAAAAGTATGTAACGATATAT
* *
3483789 AAATTTTAATTTTTAAATAAAAATAATAAAGATAAAAATAATTATAGTTTAATATTGACATAGAT
65 AAATTTTAATTTTTAAATAAAAATAATAAAGATAAAAATAATTATAGTTTAAAATTGACATAGAA
* *
3483854 AAGTCTTAACATAAAAC-AGTAAGAATTAACGTAAAAACTTATAAAAGTGAAATAACTAAATATT
130 AAGTCTTAACATAAAACTA-TAAGAATTAACGTAAAAACTTATAAAGGTGAAATAACTAAATTTT
* * *
3483918 AAATCTTAACGTAAACGTGTGAGAGTTAACGTAACAAATCAATTAAGTAAAAAAAT
194 AAATCTTAACGTAAATGTGTGAGAGTTAACATAACAAATTAATTAAGTAAAAAAAT
* * * * * * * * *
3483974 ATAATTTTAGTAAAAAATAAATATTTAAATTTATATTTTCAAACTAAAAGTGTTTAACGATATAC
1 TTAATTTTAATAAAAAAT-AATATTTATATTTATATTATCGAGCTAAAAGTATGTAACGATATAT
* * * * * *
3484039 AAATTTTATTTTTTAAATAAAGAATAATAAGGATTAAAATAATTATAGTTTATAATGGATATAGA
65 AAATTTTAATTTTTAAATAAA-AATAATAAAGATAAAAATAATTATAGTTTAAAATTGACATAGA
* * * * * * *
3484104 AAAATCTTGACGTAAAATTATAAGAATTAACGTAAAAACTTATAAAGTTAAAATAATTAAATTTT
129 AAAGTCTTAACATAAAACTATAAGAATTAACGTAAAAACTTATAAAGGTGAAATAACTAAATTTT
* * * * * * *
3484169 AAATCATAACATAAATATATGAGAGTTAATATAGCAAGTTAATTAAGTAAAAAAAT
194 AAATCTTAACGTAAATGTGTGAGAGTTAACATAACAAATTAATTAAGTAAAAAAAT
* * * * * * *
3484225 TTAATTTTATTGAAAAATAAATATTTAAATTTATATTTTAGA-ATAAAAGTATTTAACGATATAT
1 TTAATTTTAATAAAAAAT-AATATTTATATTTATATTATCGAGCTAAAAGTATGTAACGATATAT
*
3484289 AAATTTTAATTTTTAAATAAAAATAATAAAGATAAAAATAATTATAGTTTAAAATTGACATAGAT
65 AAATTTTAATTTTTAAATAAAAATAATAAAGATAAAAATAATTATAGTTTAAAATTGACATAGAA
* * * *
3484354 AAGTCTTAACGTAAAACTGTAAGAATTGACGTAAAAACTTATAAAGGTGGAATAACTAAATTTTA
130 AAGTCTTAACATAAAACTATAAGAATTAACGTAAAAACTTATAAAGGTGAAATAACTAAATTTTA
* * *
3484419 AATCCTAACGTAAATGTGTGAGAGTTAACGTAATAAATTAATTAAGTAAAAAAAT
195 AATCTTAACGTAAATGTGTGAGAGTTAACATAACAAATTAATTAAGTAAAAAAAT
3484474 TTAATTTTAATAAAAAATAAGTATTTATATTTATATTATCGAGCTAAAAGTATGTAACGATATAT
1 TTAATTTTAATAAAAAATAA-TATTTATATTTATATTATCGAGCTAAAAGTATGTAACGATATAT
* *
3484539 AAATTTTAA---TT---T-----T--T-AA-ATAAAAATAATTATAGTATAAAATTGACATAGAT
65 AAATTTTAATTTTTAAATAAAAATAATAAAGATAAAAATAATTATAGTTTAAAATTGACATAGAA
* ** * * * * * * *
3484589 AAGTTTTAATGT-AAACTGTAAAAATTGATGTAAAAATTTGTAAAAGT-AGAATAACTAAATTTT
130 AAGTCTTAACATAAAACTATAAGAATTAACGTAAAAACTTATAAAGGTGA-AATAACTAAATTTT
* ** * * * * * *
3484652 AAATCTTAATGTAAACCTGTGAGAATTAACGTAACAAGTTCATTAAGCAAAAAAAAAAAA
194 AAATCTTAACGTAAATGTGTGAGAGTTAACATAACAAATTAATTAAG----TAAAAAAAT
* * * * * * *
3484712 TTAATTTTAGTGAAAAATAAATATTTAAATATATATTCTCGAACTAAAAGTATTTAACGATATAT
1 TTAATTTTAATAAAAAAT-AATATTTATATTTATATTATCGAGCTAAAAGTATGTAACGATATAT
*
3484777 AAATTTT-ATTTTGTAAATAAAAA-AAT----A-AAAAA-AATTATAGTTCAAAATTGACATA-A
65 AAATTTTAATTTT-TAAATAAAAATAATAAAGATAAAAATAATTATAGTTTAAAATTGACATAGA
* * * * * * * * *
3484833 ATAAATTTTGACTTTAAACTATAACAGTTGACGTAAAAACTTATAAAGGTGAAATAATTAAATTT
129 A-AAGTCTTAACATAAAACTATAAGAATTAACGTAAAAACTTATAAAGGTGAAATAACTAAATTT
3484898 TAAA
193 TAAA
3484902 NNNNNNNNNN
Statistics
Matches: 992, Mismatches: 152, Indels: 72
0.82 0.12 0.06
Matches are distributed among these distances:
234 83 0.08
235 43 0.04
236 2 0.00
237 2 0.00
238 69 0.07
239 3 0.00
240 1 0.00
241 1 0.00
244 2 0.00
245 1 0.00
246 29 0.03
247 51 0.05
248 4 0.00
249 176 0.18
250 273 0.28
251 250 0.25
252 2 0.00
ACGTcount: A:0.50, C:0.06, G:0.09, T:0.35
Consensus pattern (249 bp):
TTAATTTTAATAAAAAATAATATTTATATTTATATTATCGAGCTAAAAGTATGTAACGATATATA
AATTTTAATTTTTAAATAAAAATAATAAAGATAAAAATAATTATAGTTTAAAATTGACATAGAAA
AGTCTTAACATAAAACTATAAGAATTAACGTAAAAACTTATAAAGGTGAAATAACTAAATTTTAA
ATCTTAACGTAAATGTGTGAGAGTTAACATAACAAATTAATTAAGTAAAAAAAT
Found at i:3484440 original size:500 final size:493
Alignment explanation
Indices: 3483470--3484901 Score: 1607
Period size: 500 Copynumber: 2.9 Consensus size: 493
3483460 TTAACATAAT
* * **** * * *
3483470 AAAT-TAATTTTAATAAAAAATAAACATTTATATTTATATTATCGGGTTGAAATTATGTAATGAT
1 AAATATAATTTTAATAAAAAATAAATATTTAAATTTATATTATCAAACTAAAAGTATGTAACGAT
* * *
3483534 ATTCAAATTTT-TATTTTTAAATAAAAAATAATAAGAATAAAAATAATTATCATTCAAAATTTAC
66 ATACAAATTTTAT-TTTTTAAAT-AAAAATAATAAG-ATTAAAATAATTAT-ATT--AAATTGAC
* * * * * * *
3483598 ATA-AAAAGGCCTTAACATAAAACTATAAAAATTGACATAAAAACTTATAATGGTGGATTAACTA
125 ATAGAAAA-GTCTTAACGTAAAATTAT-AAAATTGACGTAAAAACTTATAA-AGTAGAATAACTA
* * * *
3483662 AATTTTAAATCTTAACGTAAATGTGTGATAGTTAATATAATAAGTTAATTAAGTAAAAAATTTTA
187 AATTTTAAATCTTAACGTAAATATGTGAGAGTTAATATAACAAGTTAATTAAGTAAAAAAATTTA
* * * * *
3483727 ATTTTAATGAAAAAT-AATCATTTATATTTATATTATCGAGTTAAAAGTATATAACAACATATAA
252 ATTTTAATGAAAAATAAAT-ATTTAAATTTATATTATCGA-ATAAAAGTATTTAACGATATATAA
*
3483791 ATTTTAATTTTTAAATAAAAATAATAAAGATAAAAATAATTATAGTTTAATATTGACATAGATAA
315 ATTTTAATTTTTAAATAAAAATAATAAAGATAAAAATAATTATAGTTTAAAATTGACATAGATAA
* * * *
3483856 GTCTTAACATAAAACAGTAAGAATTAACGTAAAAACTTATAAAAGTGAAATAACTAAATATTAAA
380 GTCTTAACATAAAACTGTAAGAATTGACGTAAAAACTTATAAAGGTGAAATAACTAAATTTTAAA
*
3483921 TCTTAACGTAAACGTGTGAGAGTTAACGTAACAAATCAATTAAGTAAAA
445 TCCTAACGTAAACGTGTGAGAGTTAACGTAACAAATCAATTAAGTAAAA
* * * *
3483970 AAATATAATTTTAGTAAAAAATAAATATTTAAATTTATATTTTCAAACTAAAAGTGTTTAACGAT
1 AAATATAATTTTAATAAAAAATAAATATTTAAATTTATATTATCAAACTAAAAGTATGTAACGAT
* *
3484035 ATACAAATTTTATTTTTTAAATAAAGAATAATAAGGATTAAAATAATTATAGTTTATAATGGATA
66 ATACAAATTTTATTTTTTAAATAAA-AATAATAA-GATTAAAATAATTATA--TTA-AATTGACA
* * * * *
3484100 TAGAAAAATCTTGACGTAAAATTATAAGAATTAACGTAAAAACTTATAAAGTTAAAATAATTAAA
126 TAGAAAAGTCTTAACGTAAAATTATAA-AATTGACGTAAAAACTTATAAAG-TAGAATAACTAAA
* * * *
3484165 TTTTAAATCATAACATAAATATATGAGAGTTAATATAGCAAGTTAATTAAGTAAAAAAATTTAAT
189 TTTTAAATCTTAACGTAAATATGTGAGAGTTAATATAACAAGTTAATTAAGTAAAAAAATTTAAT
* * *
3484230 TTTATTGAAAAATAAATATTTAAATTTATATTTTAGAATAAAAGTATTTAACGATATATAAATTT
254 TTTAATGAAAAATAAATATTTAAATTTATATTATCGAATAAAAGTATTTAACGATATATAAATTT
3484295 TAATTTTTAAATAAAAATAATAAAGATAAAAATAATTATAGTTTAAAATTGACATAGATAAGTCT
319 TAATTTTTAAATAAAAATAATAAAGATAAAAATAATTATAGTTTAAAATTGACATAGATAAGTCT
* *
3484360 TAACGTAAAACTGTAAGAATTGACGTAAAAACTTATAAAGGTGGAATAACTAAATTTTAAATCCT
384 TAACATAAAACTGTAAGAATTGACGTAAAAACTTATAAAGGTGAAATAACTAAATTTTAAATCCT
* * *
3484425 AACGTAAATGTGTGAGAGTTAACGTAATAAATTAATTAAGTAAAA
449 AACGTAAACGTGTGAGAGTTAACGTAACAAATCAATTAAGTAAAA
* * * * *
3484470 AAATTTAATTTTAATAAAAAATAAGTATTTATATTTATATTATCGAGCTAAAAGTATGTAACGAT
1 AAATATAATTTTAATAAAAAATAAATATTTAAATTTATATTATCAAACTAAAAGTATGTAACGAT
* * * *
3484535 ATATAAATTTTAATTTTTAAAT--AAA-AAT-A-ATT---AT-AGTATA--AAATTGACATAGAT
66 ATACAAATTTTATTTTTTAAATAAAAATAATAAGATTAAAATAATTATATTAAATTGACATAGAA
* * * * * *
3484589 AAGTTTTAATGTAAACTGTA-AAAATTGATGTAAAAATTTGTAAAAGTAGAATAACTAAATTTTA
131 AAGTCTTAACGTAAAAT-TATAAAATTGACGTAAAAACTTAT-AAAGTAGAATAACTAAATTTTA
* ** * ** * * *
3484653 AATCTTAATGTAAACCTGTGAGAATTAACGTAACAAGTTCATTAAGCAAAAAAAAAAAATTAATT
194 AATCTTAACGTAAATATGTGAGAGTTAATATAACAAGTTAATTAAG----TAAAAAAATTTAATT
* * *
3484718 TTAGTGAAAAATAAATATTTAAATATATATTCTCGAACTAAAAGTATTTAACGATATATAAATTT
255 TTAATGAAAAATAAATATTTAAATTTATATTATCGAA-TAAAAGTATTTAACGATATATAAATTT
* * * *
3484783 T-ATTTTGTAAATAAAAA-AAT----A-AAAAA-AATTATAGTTCAAAATTGACATAAATAAATT
319 TAATTTT-TAAATAAAAATAATAAAGATAAAAATAATTATAGTTTAAAATTGACATAGATAAGTC
* * * * * * *
3484840 TTGACTTTAAACTATAACAGTTGACGTAAAAACTTATAAAGGTGAAATAATTAAATTTTAAA
383 TTAACATAAAACTGTAAGAATTGACGTAAAAACTTATAAAGGTGAAATAACTAAATTTTAAA
3484902 NNNNNNNNNN
Statistics
Matches: 801, Mismatches: 112, Indels: 57
0.83 0.12 0.06
Matches are distributed among these distances:
481 81 0.10
482 5 0.01
483 67 0.08
484 28 0.03
485 3 0.00
487 54 0.07
488 38 0.05
489 5 0.01
490 2 0.00
493 3 0.00
495 1 0.00
496 3 0.00
497 2 0.00
498 1 0.00
500 276 0.34
501 221 0.28
502 11 0.01
ACGTcount: A:0.50, C:0.06, G:0.09, T:0.35
Consensus pattern (493 bp):
AAATATAATTTTAATAAAAAATAAATATTTAAATTTATATTATCAAACTAAAAGTATGTAACGAT
ATACAAATTTTATTTTTTAAATAAAAATAATAAGATTAAAATAATTATATTAAATTGACATAGAA
AAGTCTTAACGTAAAATTATAAAATTGACGTAAAAACTTATAAAGTAGAATAACTAAATTTTAAA
TCTTAACGTAAATATGTGAGAGTTAATATAACAAGTTAATTAAGTAAAAAAATTTAATTTTAATG
AAAAATAAATATTTAAATTTATATTATCGAATAAAAGTATTTAACGATATATAAATTTTAATTTT
TAAATAAAAATAATAAAGATAAAAATAATTATAGTTTAAAATTGACATAGATAAGTCTTAACATA
AAACTGTAAGAATTGACGTAAAAACTTATAAAGGTGAAATAACTAAATTTTAAATCCTAACGTAA
ACGTGTGAGAGTTAACGTAACAAATCAATTAAGTAAAA
Found at i:3484462 original size:750 final size:729
Alignment explanation
Indices: 3483538--3484901 Score: 1830
Period size: 750 Copynumber: 1.8 Consensus size: 729
3483528 AATGATATTC
* *
3483538 AAATTTTTATTTTTAAATAAAAAATAATAAGAATAAAAATAATTATCATTCAAAATTTACATAAA
1 AAATTTTAATTTTTAAATAAAAAATAATAAGAATAAAAATAATTATCATTCAAAATTGACATAAA
* *
3483603 AAGGCCTTAACATAAAACTATAAAAATTGACATAAAAACTTATAATGGTGGATTAACTAAATTTT
66 AAGGCCTTAACATAAAACTATAAAAATTGACATAAAAACTTATAAAGGTGGAATAACTAAATTTT
* * * * *
3483668 AAATCTTAACGTAAATGTGTGATAGTTAATATAATAAGTTAATTAAGTAAAAAATTTTAATTTTA
131 AAATCCTAACGTAAATGTGTGAGAGTTAACATAATAAATTAATTAAGTAAAAAAATTTAATTTTA
* *
3483733 ATGAAAAATAA-TCATTTATATTTATATTATCGAGTTAAAAGTATATAACAACATATAAATTTTA
196 ATAAAAAATAAGT-ATTTATATTTATATTATCGAGCTAAAAGTATATAACAACATATAAATTTTA
*
3483797 ATTTTTAAATAAAAATAATAAAGATAAAAATAATTATAGTTTAATATTGACATAGATAAGTCTTA
260 ATTTTTAAATAAAAATAAT-----T----AT-AGTATA----AA-ATTGACATAGATAAGTCTTA
*
3483862 ACATAAAACAGTAAGAATTAACGTAAAAACTTATAAAAGT-GAAATAACTAAATATTAAATCTTA
310 ACAT-AAACAGTAAAAATTAACGTAAAAACTTATAAAAGTAG-AATAACTAAATATTAAATCTTA
* * * *
3483926 ACGTAAACGTGTGAGAGTTAACGTAACAA-ATCAATTAAG-TAAAAAAATA-TAATTTTAGTAAA
373 ACGTAAACCTGTGAGAATTAACGTAACAAGATC-ATTAAGAAAAAAAAAAATTAATTTTAGTAAA
* * * *
3483988 AAATAAATATTTAAATTTATATTTTCAAACTAAAAGTGTTTAACGATATACAAATTTTATTTTTT
437 AAATAAATATTTAAATATATATTCTCAAACTAAAAGTATTTAACGATATACAAATTTTATTTTGT
* * *
3484053 AAATAAAGAATAATAAGGATTAAAATAATTATAGTTTATAATGGATATAGAA-AAATCTTGACGT
502 AAATAAA-AA-AAT-A--A--AAAA-AATTATAGTTCAAAATGGACATA-AATAAATCTTGACGT
* * *
3484117 AAAATTATAAGAATTAACGTAAAAACTTATAAAGTTAAAATAATTAAATTTTAAATCATAACATA
558 AAAACTATAACAATTAACGTAAAAACTTATAAAGGTAAAATAATTAAATTTTAAATCATAACATA
3484182 AATATATGAGAGTTAATATAGCAAGTTAATTAAGTAAAAAAATTTAATTTTATTGAAAAATAAAT
623 AATATATGAGAGTTAATATAGCAAGTTAATTAAGTAAAAAAATTTAATTTTATTGAAAAATAAAT
3484247 ATTTAAATTTATATTTTAGAATAAAAGTATTTAACGATATAT
688 ATTTAAATTTATATTTTAGAATAAAAGTATTTAACGATATAT
*
3484289 AAATTTTAATTTTTAAAT-AAAAATAATAA-AGATAAAAATAATTAT-AGTTTAAAATTGACATA
1 AAATTTTAATTTTTAAATAAAAAATAATAAGA-ATAAAAATAATTATCA-TTCAAAATTGACATA
* * * * * *
3484351 GATAA-GTCTTAACGTAAAACTGTAAGAATTGACGTAAAAACTTATAAAGGTGGAATAACTAAAT
64 -AAAAGGCCTTAACATAAAACTATAAAAATTGACATAAAAACTTATAAAGGTGGAATAACTAAAT
*
3484415 TTTAAATCCTAACGTAAATGTGTGAGAGTTAACGTAATAAATTAATTAAGTAAAAAAATTTAATT
128 TTTAAATCCTAACGTAAATGTGTGAGAGTTAACATAATAAATTAATTAAGTAAAAAAATTTAATT
* * *
3484480 TTAATAAAAAATAAGTATTTATATTTATATTATCGAGCTAAAAGTATGTAACGATATATAAATTT
193 TTAATAAAAAATAAGTATTTATATTTATATTATCGAGCTAAAAGTATATAACAACATATAAATTT
* ** *
3484545 TAATTTTTAAATAAAAATAATTATAGTATAAAATTGACATAGATAAGTTTTAATGTAAACTGTAA
258 TAATTTTTAAATAAAAATAATTATAGTATAAAATTGACATAGATAAGTCTTAACATAAACAGTAA
* * * * * *
3484610 AAATTGATGTAAAAATTTGTAAAAGTAGAATAACTAAATTTTAAATCTTAATGTAAACCTGTGAG
323 AAATTAACGTAAAAACTTATAAAAGTAGAATAACTAAATATTAAATCTTAACGTAAACCTGTGAG
* *
3484675 AATTAACGTAACAAGTTCATTAAGCAAAAAAAAAAAATTAATTTTAGTGAAAAATAAATATTTAA
388 AATTAACGTAACAAGATCATTAAG--AAAAAAAAAAATTAATTTTAGTAAAAAATAAATATTTAA
* *
3484740 ATATATATTCTCGAACTAAAAGTATTTAACGATATATAAATTTTATTTTGTAAATAAAAAAATAA
451 ATATATATTCTCAAACTAAAAGTATTTAACGATATACAAATTTTATTTTGTAAATAAAAAAATAA
* * * * * *
3484805 AAAAAATTATAGTTCAAAATTGACATAAATAAATTTTGACTTTAAACTATAACAGTTGACGTAAA
516 AAAAAATTATAGTTCAAAATGGACATAAATAAATCTTGACGTAAAACTATAACAATTAACGTAAA
*
3484870 AACTTATAAAGGTGAAATAATTAAATTTTAAA
581 AACTTATAAAGGTAAAATAATTAAATTTTAAA
3484902 NNNNNNNNNN
Statistics
Matches: 543, Mismatches: 59, Indels: 43
0.84 0.09 0.07
Matches are distributed among these distances:
729 2 0.00
730 77 0.14
731 4 0.01
733 1 0.00
734 82 0.15
735 25 0.05
736 5 0.01
737 10 0.02
738 78 0.14
740 5 0.01
741 2 0.00
745 1 0.00
749 2 0.00
750 228 0.42
751 21 0.04
ACGTcount: A:0.50, C:0.06, G:0.09, T:0.35
Consensus pattern (729 bp):
AAATTTTAATTTTTAAATAAAAAATAATAAGAATAAAAATAATTATCATTCAAAATTGACATAAA
AAGGCCTTAACATAAAACTATAAAAATTGACATAAAAACTTATAAAGGTGGAATAACTAAATTTT
AAATCCTAACGTAAATGTGTGAGAGTTAACATAATAAATTAATTAAGTAAAAAAATTTAATTTTA
ATAAAAAATAAGTATTTATATTTATATTATCGAGCTAAAAGTATATAACAACATATAAATTTTAA
TTTTTAAATAAAAATAATTATAGTATAAAATTGACATAGATAAGTCTTAACATAAACAGTAAAAA
TTAACGTAAAAACTTATAAAAGTAGAATAACTAAATATTAAATCTTAACGTAAACCTGTGAGAAT
TAACGTAACAAGATCATTAAGAAAAAAAAAAATTAATTTTAGTAAAAAATAAATATTTAAATATA
TATTCTCAAACTAAAAGTATTTAACGATATACAAATTTTATTTTGTAAATAAAAAAATAAAAAAA
ATTATAGTTCAAAATGGACATAAATAAATCTTGACGTAAAACTATAACAATTAACGTAAAAACTT
ATAAAGGTAAAATAATTAAATTTTAAATCATAACATAAATATATGAGAGTTAATATAGCAAGTTA
ATTAAGTAAAAAAATTTAATTTTATTGAAAAATAAATATTTAAATTTATATTTTAGAATAAAAGT
ATTTAACGATATAT
Found at i:3484796 original size:238 final size:235
Alignment explanation
Indices: 3484320--3484901 Score: 659
Period size: 234 Copynumber: 2.4 Consensus size: 235
3484310 AATAATAAAG
* *
3484320 ATAAAAATAATTATAGTTTAAAATTGACATAGATAAGTCTTAACGTAAAACTGTAAGAATTGACG
1 ATAAAAATAATTATAGTATAAAATTGACATAGATAAGTCTTAACGTAAAACTGTAAAAATTGACG
* * ** *
3484385 TAAAAACTTATAAAGGTGGAATAACTAAATTTTAAATCCTAACGTAAATGTGTGAGAGTTAACGT
66 TAAAAACTTATAAAAGTAGAATAACTAAATTTTAAATCCTAACGTAAACCTGTGAGAATTAACGT
* * * * * *
3484450 AATAAATTAATTAAGTAAAAAAATTTAATTTTAATAAAAAATAAGTATTTATATTTATATTATCG
131 AACAAATTAATTAAGAAAAAAAAATTAATTTTAATAAAAAATAAATATTTAAATATATATTATCG
*
3484515 AGCTAAAAGTATGTAACGATATATAAATTTTAATTTTTAA
196 AACTAAAAGTATGTAACGATATATAAATTTTAATTTTTAA
* * *
3484555 ATAAAAATAATTATAGTATAAAATTGACATAGATAAGTTTTAATGT-AAACTGTAAAAATTGATG
1 ATAAAAATAATTATAGTATAAAATTGACATAGATAAGTCTTAACGTAAAACTGTAAAAATTGACG
* * * *
3484619 TAAAAATTTGTAAAAGTAGAATAACTAAATTTTAAATCTTAATGTAAACCTGTGAGAATTAACGT
66 TAAAAACTTATAAAAGTAGAATAACTAAATTTTAAATCCTAACGTAAACCTGTGAGAATTAACGT
* * * *
3484684 AACAAGTTCATTAAGCAAAAAAAAAAAATTAATTTTAGTGAAAAATAAATATTTAAATATATATT
131 AACAAATTAATTAAG----AAAAAAAAATTAATTTTAATAAAAAATAAATATTTAAATATATATT
* *
3484749 CTCGAACTAAAAGTATTTAACGATATATAAATTTT-ATTTTGTAA
192 ATCGAACTAAAAGTATGTAACGATATATAAATTTTAATTTT-TAA
* * * * * * *
3484793 ATAAAAAAATAAAAAAAATTATAGT-TCAAAATTGACATAAATAAATTTTGACTTTAAACTATAA
1 AT--AAAAAT------AATTATAGTAT-AAAATTGACATAGATAAGTCTTAACGTAAAACTGTAA
* * * *
3484857 CAGTTGACGTAAAAACTTATAAAGGT-GAAATAATTAAATTTTAAA
57 AAATTGACGTAAAAACTTATAAAAGTAG-AATAACTAAATTTTAAA
3484902 NNNNNNNNNN
Statistics
Matches: 291, Mismatches: 40, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
234 84 0.29
235 43 0.15
237 5 0.02
238 76 0.26
240 6 0.02
245 1 0.00
246 32 0.11
247 44 0.15
ACGTcount: A:0.49, C:0.06, G:0.10, T:0.34
Consensus pattern (235 bp):
ATAAAAATAATTATAGTATAAAATTGACATAGATAAGTCTTAACGTAAAACTGTAAAAATTGACG
TAAAAACTTATAAAAGTAGAATAACTAAATTTTAAATCCTAACGTAAACCTGTGAGAATTAACGT
AACAAATTAATTAAGAAAAAAAAATTAATTTTAATAAAAAATAAATATTTAAATATATATTATCG
AACTAAAAGTATGTAACGATATATAAATTTTAATTTTTAA
Found at i:3485850 original size:28 final size:28
Alignment explanation
Indices: 3485818--3485872 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
3485808 CTTATTCTCT
*
3485818 CAGCACTTATTTTCTAAATTAAAAAACA
1 CAGCACTTATTCTCTAAATTAAAAAACA
*
3485846 CAGCACTTATTCTCTAGATTAAAAAAC
1 CAGCACTTATTCTCTAAATTAAAAAAC
3485873 TAACTTTTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.44, C:0.20, G:0.05, T:0.31
Consensus pattern (28 bp):
CAGCACTTATTCTCTAAATTAAAAAACA
Found at i:3487182 original size:13 final size:13
Alignment explanation
Indices: 3487164--3487188 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3487154 AAACTACCAG
3487164 AAAAAAAAGGAAT
1 AAAAAAAAGGAAT
3487177 AAAAAAAAGGAA
1 AAAAAAAAGGAA
3487189 AATTTACAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (13 bp):
AAAAAAAAGGAAT
Found at i:3495054 original size:18 final size:19
Alignment explanation
Indices: 3495015--3495058 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
3495005 ATTAAATTTA
*
3495015 AATTAAATAAATTTTTAAT
1 AATTAAATAAATTATTAAT
*
3495034 AATTAAAT-AATTATTATT
1 AATTAAATAAATTATTAAT
3495052 AATTAAA
1 AATTAAA
3495059 ATATTATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
AATTAAATAAATTATTAAT
Found at i:3495069 original size:19 final size:19
Alignment explanation
Indices: 3495015--3495069 Score: 53
Period size: 18 Copynumber: 2.9 Consensus size: 19
3495005 ATTAAATTTA
* *
3495015 AATTAAATAAATT-TTTAAT
1 AATTAAA-ATATTATTTATT
3495034 AATT-AAATAATTA-TTATT
1 AATTAAAAT-ATTATTTATT
3495052 AATTAAAATATTATTTAT
1 AATTAAAATATTATTTAT
3495070 CATTTTATGT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
17 1 0.03
18 17 0.57
19 12 0.40
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
AATTAAAATATTATTTATT
Found at i:3495190 original size:18 final size:19
Alignment explanation
Indices: 3495169--3495220 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
3495159 GAATTAATAG
*
3495169 TTAATTATAAAA-ATTTAT
1 TTAATTATAAAATAATTAT
3495187 TTAATT-TAAAATAATTAT
1 TTAATTATAAAATAATTAT
* *
3495205 ATAAATATAAAATAAT
1 TTAATTATAAAATAAT
3495221 AATTAATATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
17 5 0.17
18 15 0.52
19 9 0.31
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
TTAATTATAAAATAATTAT
Found at i:3495224 original size:84 final size:84
Alignment explanation
Indices: 3495124--3495284 Score: 227
Period size: 84 Copynumber: 1.9 Consensus size: 84
3495114 ATCTTATTTG
* * * * *
3495124 AATATGAAATGATAATTGATTTTTTAATT-A-AAGACGAATTAATAGTTAATTATAAAAATTTAT
1 AATATAAAATAATAATTAATATTTTAATTGAGAAGA--AATTAATAATTAATTATAAAAATTTAT
3495187 TTAATTTAAAATAATTATATA
64 TTAATTTAAAATAATTATATA
* *
3495208 AATATAAAATAATAATTAATATTTTAATTGAGAATAAATTAATAATTAATTATATAAATTTATTT
1 AATATAAAATAATAATTAATATTTTAATTGAGAAGAAATTAATAATTAATTATAAAAATTTATTT
3495273 AATTTAAAATAA
66 AATTTAAAATAA
3495285 AAATAGAGGT
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
84 64 0.94
85 1 0.01
86 3 0.04
ACGTcount: A:0.52, C:0.01, G:0.05, T:0.43
Consensus pattern (84 bp):
AATATAAAATAATAATTAATATTTTAATTGAGAAGAAATTAATAATTAATTATAAAAATTTATTT
AATTTAAAATAATTATATA
Found at i:3521653 original size:18 final size:18
Alignment explanation
Indices: 3521630--3521688 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
3521620 ATAAGAGCCT
* *
3521630 TGCTGTTGTAGTTGCTGC
1 TGCTGTTGCAGATGCTGC
*
3521648 TGCTGTAT-CAGCTGCTGC
1 TGCTGT-TGCAGATGCTGC
*
3521666 TGCTGTTGCAGATGTTGC
1 TGCTGTTGCAGATGCTGC
3521684 TGCTG
1 TGCTG
3521689 ATGTTGAACA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
17 1 0.03
18 33 0.94
19 1 0.03
ACGTcount: A:0.08, C:0.20, G:0.32, T:0.39
Consensus pattern (18 bp):
TGCTGTTGCAGATGCTGC
Found at i:3524943 original size:2 final size:2
Alignment explanation
Indices: 3524936--3524968 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
3524926 GTCTAAATGA
*
3524936 AG AG AG AG AG AG AA AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
3524969 ATGAGAGGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (2 bp):
AG
Found at i:3524955 original size:10 final size:10
Alignment explanation
Indices: 3524940--3524975 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
3524930 AAATGAAGAG
3524940 AGAGAGAGAA
1 AGAGAGAGAA
*
3524950 AGAGAGAGAG
1 AGAGAGAGAA
3524960 AGAGAGAGAA
1 AGAGAGAGAA
*
3524970 TGAGAG
1 AGAGAG
3524976 GTACTTACCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.53, C:0.00, G:0.44, T:0.03
Consensus pattern (10 bp):
AGAGAGAGAA
Found at i:3531434 original size:22 final size:20
Alignment explanation
Indices: 3531402--3531441 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
3531392 AATAAATATT
*
3531402 TTAATATTTTATATTTTTTA
1 TTAATATTTTATACTTTTTA
3531422 TTAATAGTGTTTATACTTTT
1 TTAATA-T-TTTATACTTTT
3531442 AAGGTAGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 1 0.06
22 10 0.59
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.65
Consensus pattern (20 bp):
TTAATATTTTATACTTTTTA
Found at i:3534675 original size:21 final size:21
Alignment explanation
Indices: 3534651--3534706 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
3534641 TGATGTTGCA
* *
3534651 GGAGTTGTGGTTGGGGTTGTT
1 GGAGTTGTGGTCGGGGTCGTT
*
3534672 GGAGTCGTGGTCGGGGTCGTT
1 GGAGTTGTGGTCGGGGTCGTT
*
3534693 GGAGTTGTGATCGG
1 GGAGTTGTGGTCGG
3534707 TGCTGCCGGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.07, C:0.07, G:0.52, T:0.34
Consensus pattern (21 bp):
GGAGTTGTGGTCGGGGTCGTT
Found at i:3549048 original size:2 final size:2
Alignment explanation
Indices: 3549041--3549066 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
3549031 CATCAATTGA
3549041 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
3549067 TAAGATTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3553376 original size:26 final size:26
Alignment explanation
Indices: 3553298--3553380 Score: 75
Period size: 26 Copynumber: 3.2 Consensus size: 26
3553288 TAAAAAACTA
* *
3553298 AAAAT-TTAA-ATTTAAAAATTAATT
1 AAAATATTAATATTTAAAAATAAAAT
* *
3553322 AAAATTATTAATGA-TT-AAATTATATAT
1 AAAA-TATTAAT-ATTTAAAAATA-AAAT
3553349 AAAATATTAATATTTAAAAATAAAAT
1 AAAATATTAATATTTAAAAATAAAAT
3553375 AAAATA
1 AAAATA
3553381 AAAATAGATA
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
24 4 0.09
25 2 0.04
26 26 0.57
27 13 0.28
28 1 0.02
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (26 bp):
AAAATATTAATATTTAAAAATAAAAT
Found at i:3553444 original size:28 final size:28
Alignment explanation
Indices: 3553396--3553452 Score: 64
Period size: 28 Copynumber: 2.0 Consensus size: 28
3553386 AGATAATCAT
3553396 TTATTATAATAAAAAGTTTAAGT-TTTTAA
1 TTATTATAATAAAAAG-TTAA-TATTTTAA
*
3553425 TTATATATTATAAAAA-TTAATATTTTAA
1 TTAT-TATAATAAAAAGTTAATATTTTAA
3553453 ATTTAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
27 1 0.04
28 10 0.40
29 4 0.16
30 10 0.40
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (28 bp):
TTATTATAATAAAAAGTTAATATTTTAA
Found at i:3553538 original size:58 final size:59
Alignment explanation
Indices: 3553459--3553585 Score: 141
Period size: 58 Copynumber: 2.2 Consensus size: 59
3553449 TTAAATTTAA
* * *
3553459 AAATTAATTAAAATTATTAATATTTTAAAGAATTTATGATTAA-ATTATAAATAAAATAT
1 AAATTATTTAAAAATATTAATA-TTTAAAGAATTAATGATTAATATTATAAATAAAATAT
* * ** * * *
3553518 TAA-TATTTAAAAATGTTAATATTTAAATTATTAATTATTAATATTTTAAATAAATTAT
1 AAATTATTTAAAAATATTAATATTTAAAGAATTAATGATTAATATTATAAATAAAATAT
3553576 AAATTATTTA
1 AAATTATTTA
3553586 TATTTAAAAA
Statistics
Matches: 55, Mismatches: 11, Indels: 4
0.79 0.16 0.06
Matches are distributed among these distances:
57 16 0.29
58 31 0.56
59 8 0.15
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (59 bp):
AAATTATTTAAAAATATTAATATTTAAAGAATTAATGATTAATATTATAAATAAAATAT
Found at i:3553544 original size:42 final size:43
Alignment explanation
Indices: 3553467--3553567 Score: 112
Period size: 42 Copynumber: 2.5 Consensus size: 43
3553457 AAAAATTAAT
3553467 TAAAATTATTAATATTTTAAAGAATTTATGATTAAATTATAAA
1 TAAAATTATTAATATTTTAAAGAATTTATGATTAAATTATAAA
3553510 TAAAA-TATTAATA-TTTAAA-AATGTTAAT-ATTTAAATTAT---
1 TAAAATTATTAATATTTTAAAGAAT-TT-ATGA-TTAAATTATAAA
3553549 T--AATTATTAATATTTTAAA
1 TAAAATTATTAATATTTTAAA
3553568 TAAATTATAA
Statistics
Matches: 53, Mismatches: 0, Indels: 14
0.79 0.00 0.21
Matches are distributed among these distances:
37 2 0.04
38 8 0.15
39 7 0.13
40 3 0.06
41 9 0.17
42 19 0.36
43 5 0.09
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (43 bp):
TAAAATTATTAATATTTTAAAGAATTTATGATTAAATTATAAA
Found at i:3553556 original size:16 final size:15
Alignment explanation
Indices: 3553510--3553552 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
3553500 AAATTATAAA
3553510 TAAAATATTAATATT
1 TAAAATATTAATATT
*
3553525 TAAAAATGTTAATATT
1 T-AAAATATTAATATT
*
3553541 TAAATTATTAAT
1 TAAAATATTAAT
3553553 TATTAATATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (15 bp):
TAAAATATTAATATT
Found at i:3553587 original size:80 final size:75
Alignment explanation
Indices: 3553434--3553577 Score: 180
Period size: 80 Copynumber: 1.9 Consensus size: 75
3553424 ATTATATATT
* * *
3553434 ATAAAAATTAATATTTTAAATTTAAAAATTAATTAAAATTATTAATATTTTAAAGAATTTATGAT
1 ATAAAAATTAATATTTAAAATTTAAAAATTAATTAAAATTATTAATATTTTAAAGAAATTATAAT
3553499 TAAATTATAA
66 TAAATTATAA
* * * *
3553509 ATAAAATATTAATATTTAAAAATGTTAATATTTAAATTATTAATTATTAATATTTTAAATAAATT
1 ATAAAA-ATTAATATTT-AAAAT-TTAAAAATT-AATTA-AAATTATTAATATTTTAAAGAAATT
3553574 ATAA
61 ATAA
3553578 ATTATTTATA
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
75 6 0.11
76 10 0.18
77 4 0.07
78 7 0.12
79 5 0.09
80 25 0.44
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (75 bp):
ATAAAAATTAATATTTAAAATTTAAAAATTAATTAAAATTATTAATATTTTAAAGAAATTATAAT
TAAATTATAA
Found at i:3553594 original size:80 final size:75
Alignment explanation
Indices: 3553428--3553595 Score: 176
Period size: 80 Copynumber: 2.2 Consensus size: 75
3553418 TTTTTAATTA
* *
3553428 TATATTATAAAAATTAATATTTTAAATTTAAAAATTAATTAAAATTATTAATATTTTAAAGAATT
1 TATATT-TAAAAATTAATATTTAAAATTTAAAAATTAATTAAAATTATTAATATTTTAAAGAAAT
*
3553493 TATGATTAAAT
65 TATAATTAAAT
** * * * *
3553504 TATAAATAAAATATTAATATTTAAAAATGTTAATATTTAAATTATTAATTATTAATATTTTAAAT
1 TATATTTAAAA-ATTAATATTT-AAAAT-TTAAAAATT-AATTA-AAATTATTAATATTTTAAAG
*
3553569 AAATTATAAATT-ATT
61 AAATTAT-AATTAAAT
3553584 TATATTTAAAAA
1 TATATTTAAAAA
3553596 ATAAAATAAA
Statistics
Matches: 74, Mismatches: 12, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
75 5 0.07
76 14 0.19
77 4 0.05
78 7 0.09
79 6 0.08
80 35 0.47
81 3 0.04
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (75 bp):
TATATTTAAAAATTAATATTTAAAATTTAAAAATTAATTAAAATTATTAATATTTTAAAGAAATT
ATAATTAAAT
Found at i:3554574 original size:27 final size:27
Alignment explanation
Indices: 3554509--3554574 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
3554499 TATTAATATT
* * *
3554509 TAAATTATCAATTATTAATATTTTAAA
1 TAAAATATAAATTATTAATATTTAAAA
* *
3554536 TTAATTATAAATTATTAATATTTAAAAA
1 TAAAATATAAATTATTAATATTT-AAAA
3554564 TAAAATA-AAAT
1 TAAAATATAAAT
3554575 AAAAATAGAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
27 25 0.76
28 8 0.24
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (27 bp):
TAAAATATAAATTATTAATATTTAAAA
Found at i:3554627 original size:32 final size:30
Alignment explanation
Indices: 3554584--3554648 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 30
3554574 TAAAAATAGA
*
3554584 TAATCATATATTATAATAAAAGTTTAAGT-TTT
1 TAATCATATA-T-TAATAAAAATTTAA-TATTT
*
3554616 TAATTATATATTAATAAAAATTTAATATTT
1 TAATCATATATTAATAAAAATTTAATATTT
3554646 TAA
1 TAA
3554649 ACTTAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 1 0.03
30 19 0.63
31 1 0.03
32 9 0.30
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.48
Consensus pattern (30 bp):
TAATCATATATTAATAAAAATTTAATATTT
Found at i:3554719 original size:25 final size:26
Alignment explanation
Indices: 3554691--3554755 Score: 87
Period size: 25 Copynumber: 2.5 Consensus size: 26
3554681 TTAATCATAA
*
3554691 TAATTTTTAAATTATCAA-AAAATAT
1 TAATTTTTAAATTATAAATAAAATAT
*
3554716 TAATTATTAAATTATAAATAAAATAT
1 TAATTTTTAAATTATAAATAAAATAT
3554742 TAATATTTCTAAAT
1 TAAT-TTT-TAAAT
3554756 ATTAATTATT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
25 16 0.47
26 11 0.32
27 2 0.06
28 5 0.15
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (26 bp):
TAATTTTTAAATTATAAATAAAATAT
Found at i:3580883 original size:2 final size:2
Alignment explanation
Indices: 3580876--3580922 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
3580866 TAAACAATAC
3580876 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3580918 AT AT A
1 AT AT A
3580923 CTAAAGACTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:3582863 original size:26 final size:26
Alignment explanation
Indices: 3582803--3582857 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 26
3582793 TCCATGTATA
* **
3582803 GTAAGATTTATAAAAAAAAAAAAGTT
1 GTAACATTTATAAAAAAAAAAAACCT
3582829 GTAACATTTATTAGAAAAAAAAAAACCT
1 GTAACATTTA-TA-AAAAAAAAAAACCT
3582857 G
1 G
3582858 AAATTTGGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 9 0.38
27 2 0.08
28 13 0.54
ACGTcount: A:0.58, C:0.05, G:0.11, T:0.25
Consensus pattern (26 bp):
GTAACATTTATAAAAAAAAAAAACCT
Found at i:3583070 original size:16 final size:16
Alignment explanation
Indices: 3583051--3583096 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
3583041 TAAACGCACT
3583051 GAAAAGAAAAGGAAAA
1 GAAAAGAAAAGGAAAA
*
3583067 GAAAAGATAA-GAGAAA
1 GAAAAGAAAAGGA-AAA
3583083 G-AAAGAAAGAGGAA
1 GAAAAGAAA-AGGAA
3583097 CGAGTCAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
15 8 0.32
16 15 0.60
17 2 0.08
ACGTcount: A:0.70, C:0.00, G:0.28, T:0.02
Consensus pattern (16 bp):
GAAAAGAAAAGGAAAA
Found at i:3586885 original size:2 final size:2
Alignment explanation
Indices: 3586878--3586936 Score: 77
Period size: 2 Copynumber: 30.5 Consensus size: 2
3586868 TTACTCCTTG
* *
3586878 TA TA TA TA TA TA TA TA TA TA TA TA TA TC TA TA TC TA TA -A T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
3586918 TA TA TA TA TA AA TA TA TA T
1 TA TA TA TA TA TA TA TA TA T
3586937 TTGACTGCTT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
1 2 0.04
2 47 0.96
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:3588157 original size:2 final size:2
Alignment explanation
Indices: 3588144--3588179 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
3588134 GTATACATAC
*
3588144 AT AT AT AG AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3588180 TTGAGAAAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Done.