Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398670.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1956.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 886

Length: 1477
ACGTcount: A:0.09, C:0.04, G:0.03, T:0.10

Warning! 1084 characters in sequence are not A, C, G, or T


Found at i:1429 original size:20 final size:20

Alignment explanation


    Indices: 1404--1455  Score: 95
    Period size: 20  Copynumber: 2.6  Consensus size: 20

       1394 TTACTTGCTT

                   *            
       1404 TAATTGAATTTATAACCTCA
          1 TAATTGATTTTATAACCTCA

                                
       1424 TAATTGATTTTATAACCTCA
          1 TAATTGATTTTATAACCTCA

                        
       1444 TAATTGATTTTA
          1 TAATTGATTTTA

       1456 ATTTTAGTTT


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  20   31  1.00

ACGTcount: A:0.37, C:0.12, G:0.06, T:0.46


Consensus pattern (20 bp):   
TAATTGATTTTATAACCTCA
Done.