Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397396.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1062.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25985

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1395--1886
171
2.9
171
81
4
521
34
14
13
38
1.85
1633--2431
171
4.7
169
74
5
441
35
11
12
37
1.80
4457--4905
171
2.6
171
78
2
411
37
13
12
35
1.81
5447--5759
171
1.8
171
79
1
367
39
12
11
33
1.80
5985--6519
171
3.1
171
74
6
437
38
12
9
37
1.77
6360--6691
171
2.0
161
86
0
385
37
13
10
35
1.80
7356--7599
127
1.9
127
79
3
276
33
11
10
45
1.74
10456--10772
169
1.9
160
77
11
318
37
11
11
36
1.77
10733--11042
171
1.9
161
83
4
320
37
11
10
36
1.78
12745--13307
171
3.3
169
77
8
577
34
14
11
36
1.83
13368--13816
170
2.6
171
79
3
431
36
15
12
35
1.85
13950--14647
171
4.1
170
76
8
585
35
13
13
37
1.85
15316--16370
171
6.2
171
72
7
611
36
11
14
35
1.82
16873--21656
171
28.0
171
73
3
2800
36
12
12
35
1.80
17930--21656
511
7.3
506
73
6
1835
36
12
12
35
1.81
21898--22228
172
2.0
162
80
10
373
39
9
14
34
1.77
22930--25140
171
13.0
170
72
4
1248
36
12
12
35
1.81
24489--25140
340
1.9
330
80
4
650
37
11
12
35
1.80
25666--25981
171
1.8
171
80
5
379
37
12
12
37
1.83

Tables:   1

The End!