Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398699.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1985.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3902
ACGTcount: A:0.19, C:0.07, G:0.07, T:0.20

Warning! 1814 characters in sequence are not A, C, G, or T


Found at i:2405 original size:170 final size:171

Alignment explanation


    Indices: 2014--2424  Score: 445
    Period size: 170  Copynumber: 2.4  Consensus size: 171

       2004 NNNTAAATGT

                          * **       *   *  *              *             *   
       2014 CTGCCTCGAGAAACATGTAAAAAAACCCATTCGTTGAGAAGAAAAGTTCATTTATAGTCACCCAT
          1 CTGCCTCGAGAAACGTACAAAAAAAGCCAATCATTGAGAAGAAAAGTCCATTTATAGTCACTCAT

                              *        *   *                         ********
       2079 TCCTTCAAAAAGTTTATTTCACACTTTTAATTGTTTTATAATCTCATAATTGATTTTNNNNNNNN
         66 TCCTTCAAAAAGTTTATTACACACTTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAA

            **            *                       * *
       2144 NNTTTTTATATTTTTTGTTAAAACAGACTAGAATTGAATGT
        131 TATTTTTATATTTTCTGTTAAAACAGACTAGAATTGAAAGC

            *  *         *  *                  *        *                 *  
       2185 TTGTCTCGAGAAATGTGCAAAAAAAGCCAATCATTAAGAAG-AACGTCCATTTATAGTCACTTAT
          1 CTGCCTCGAGAAACGTACAAAAAAAGCCAATCATTGAGAAGAAAAGTCCATTTATAGTCACTCAT

              *                                                              
       2249 TCTTTC-AAAAGCTTTATTAC-CGACTTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTG
         66 TCCTTCAAAAAG-TTTATTACAC-ACTTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTG

                     * *                    *          
       2312 AATATTTTTTTCTTTTCT-TTAAAACAGACTATAATTGAAAGC
        129 AATATTTTTATATTTTCTGTTAAAACAGACTAGAATTGAAAGC

                                                                             
       2354 CTGCCTC-ATGAAACGTACAAAAAAAGCCAATCATTGAGAAGAAAAGTCCATTTATAGTCACTCA
          1 CTGCCTCGA-GAAACGTACAAAAAAAGCCAATCATTGAGAAGAAAAGTCCATTTATAGTCACTCA

                   
       2418 TTCCTTC
         65 TTCCTTC

       2425 NNNNNNNNNN


Statistics
Matches: 195,  Mismatches: 41, Indels: 9
        0.80            0.17        0.04

Matches are distributed among these distances:
 168    1  0.01
 169   61  0.31
 170  101  0.52
 171   32  0.16

ACGTcount: A:0.35, C:0.16, G:0.11, T:0.36


Consensus pattern (171 bp):   
CTGCCTCGAGAAACGTACAAAAAAAGCCAATCATTGAGAAGAAAAGTCCATTTATAGTCACTCAT
TCCTTCAAAAAGTTTATTACACACTTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAA
TATTTTTATATTTTCTGTTAAAACAGACTAGAATTGAAAGC
Done.