Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398725.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2009.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2612
ACGTcount: A:0.21, C:0.08, G:0.07, T:0.21

Warning! 1151 characters in sequence are not A, C, G, or T


Found at i:1143 original size:171 final size:161

Alignment explanation


    Indices: 966--1286  Score: 365
    Period size: 171  Copynumber: 1.9  Consensus size: 161

        956 NNNNNNNNNN

                      *           *            *            *             *  
        966 TATTACTCGCTTTAAATGATTTTAGAACCTCATAATTGATTTTAA-TTTAAATTTGATAATATTT
          1 TATTACTCGCATTAAATGATTTCAGAACCTCATAACTGATTTTAAGTTGAAATTT-ATAATAGTT

                                           *                                 
       1030 TTTATTAAAAAAGATTATAATTGAATGTCTATCTCAAAAAACATGAAGAAAAACATATCCATTGG
         65 TTTATTAAAAAAGATTATAATTGAATGTCTACCTCAAAAAACATGAAGAAAAACATATCCATTGG

                 *                                    
       1095 CAAGAGAAGTCCATTTATAGTNNNNNNNNNNTTTGAATTCCT
        130 CAAGAAAAGTCCATTTATAGT----------TTTGAATTCCT

                                    *                          *   * *       
       1137 TATTACTCGCATTAAATGATTTCATAACCTCATAACTGATTTTAAGTTGAACTTTTTTATAGTTT
          1 TATTACTCGCATTAAATGATTTCAGAACCTCATAACTGATTTTAAGTTGAAATTTATAATAGTTT

                     * *                 *   * **          *    *            
       1202 TTATTAAAACATATTATAATTGAATGTCTGCCTTATGAAACATGAAGCAAAATATATCCATTGGC
         66 TTATTAAAAAAGATTATAATTGAATGTCTACCTCAAAAAACATGAAGAAAAACATATCCATTGGC

                                
       1267 AAGAAAAGTCCATTTATAGT
        131 AAGAAAAGTCCATTTATAGT

       1287 CACNNNNNNN


Statistics
Matches: 130,  Mismatches: 19, Indels: 2
        0.86            0.13        0.01

Matches are distributed among these distances:
 171  123  0.95
 172    7  0.05

ACGTcount: A:0.37, C:0.12, G:0.11, T:0.38


Consensus pattern (161 bp):   
TATTACTCGCATTAAATGATTTCAGAACCTCATAACTGATTTTAAGTTGAAATTTATAATAGTTT
TTATTAAAAAAGATTATAATTGAATGTCTACCTCAAAAAACATGAAGAAAAACATATCCATTGGC
AAGAAAAGTCCATTTATAGTTTTGAATTCCT
Done.