Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397402.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3118.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24426
ACGTcount: A:0.27, C:0.11, G:0.11, T:0.28
Warning! 5750 characters in sequence are not A, C, G, or T
Found at i:2219 original size:170 final size:169
Alignment explanation
Indices: 1484--2694 Score: 615
Period size: 170 Copynumber: 7.1 Consensus size: 169
1474 NNNNNNNNNN
* * * * ** *
1484 ACTCACTTTAAATGGTTTTATAATCTA-ATAATTAATTTTAAGTTGAATTTTTTTTTCAACTTTG
1 ACTCAC-TTAAATAGTTTTATAATC-ACAAAATTAATTTTAAGTTTAA-TTTTTTTAC-TTTTTT
* * * * * *
1548 GTTAAAACAG-ATAATAATTGATTATCTACCTTGAGAAATGTGATGAAAAATGCATTCATTGGTA
62 ATTAAAACAGAAT-ATAATTGAATGTCTACCTTGAGAAACGTGAAGAAAAAAGCATTCATTGGTA
* * * **
1612 A-AAAAATTTCA-TTATAGTCATCCATTATTTCAAAAGCC-TATT
126 AGAAAAGTCT-ATTTATAGTCACCCATTCCTTCAAAAGCCTTATT
* * ** * * ***
1654 ACTCGCTTTTAATAGTTTTATAATGTCAAAATTCATTTTAAGTTCAATTTTTTTACTTTTTCGGC
1 ACTCAC-TTAAATAGTTTTATAATCACAAAATTAATTTTAAGTTTAATTTTTTTACTTTTT-TAT
* * * * * * * * *
1719 TGAAACA-AATTATAATTGAATGTTTACATTGAGAAACGTGAAGAAAAAGGTATTCACTAGCAAA
64 TAAAACAGAA-TATAATTGAATGTCTACCTTGAGAAACGTGAAGAAAAAAGCATTCATTGGTAAG
* ***********
1783 AAAAGTCCATNNNNNNNNNNTCATTCCTTCAAAAGCCTTATT
128 AAAAGTCTATTTATAGTCACCCATTCCTTCAAAAGCCTTATT
* ** * * * * * * ***
1825 ACCCACTTTAAACGGTCTTGTTATCTCAAAATTGATTTTATGTTTAATTTTCTTTACATTTTGGG
1 ACTCAC-TTAAATAGTTTTATAATCACAAAATTAATTTTAAGTTTAATTTT-TTTAC-TTTTTTA
* * * * ** * *
1890 TTTAAACAGACTATAATTGAATGTTTACATCAAGAAATGCGAAGAGAAAAA--ATTCATTGGTAA
63 TTAAAACAGAATATAATTGAATGTCTACCTTGAGAAACGTGAAGA-AAAAAGCATTCATTGGTAA
* * * * * *
1953 GAAAAGCCCATTTATAGTCTCCCATACCTTCAAAAGTCTTCTT
127 GAAAAGTCTATTTATAGTCACCCATTCCTTCAAAAGCCTTATT
* ***********
1996 ACTCACTTTAAATGGTTTTATAANNNNNNNNNNGATTTTAAG-TTAATTTTTTTTTA-TTTTTTA
1 ACTCAC-TTAAATAGTTTTATAATCACAAAATTAATTTTAAGTTTAA--TTTTTTTACTTTTTTA
* * * * * * *
2059 TTAAAATAGACTATAATTGAATATCTACCTTGAGAAACGTTAAGAAAAAAACCTTCTTTGGTAAG
63 TTAAAACAGAATATAATTGAATGTCTACCTTGAGAAACGTGAAGAAAAAAGCATTCATTGGTAAG
* * *******
2124 AAAAGTCTATTTATAATCTCCCATTCCTTCAAAAGNNNNNNN
128 AAAAGTCTATTTATAGTCACCCATTCCTTCAAAAGCCTTATT
*** * * * * * * *
2166 NNNCGCTTTAAATGGTTTTATAATCACATAATTGATTTTGA-TTTGAATTTTTTTACATTTTAAT
1 ACTCAC-TTAAATAGTTTTATAATCACAAAATTAATTTTAAGTTT-AATTTTTTTACTTTTTTAT
* * * * * * * * *
2230 TAAAACAAAAAATAATTGAATGTCTATCTTTAGAGACGTGAAGAATAATGCATTCACTGGCAAGA
64 TAAAACAGAATATAATTGAATGTCTACCTTGAGAAACGTGAAGAAAAAAGCATTCATTGGTAAGA
* * *
2295 AAAGCCTA-TTATAGTCACCTATTCATTCAAAAGCCTTATT
129 AAAGTCTATTTATAGTCACCCATTCCTTCAAAAGCCTTATT
* * *
2335 ACTCACTTAAATAGTTTTATAATCTCAAAATTAATTTTAAGTTTAATTTTTTTAGTTTTTTGCTT
1 ACTCACTTAAATAGTTTTATAATCACAAAATTAATTTTAAGTTTAATTTTTTTACTTTTTT-ATT
* * * * *
2400 AAAACAGATTATAATTGAATGTCTACGTTGAGAAATGTGAAGAAAAAAGCGTTCATTAGTAAGAA
65 AAAACAGAATATAATTGAATGTCTACCTTGAGAAACGTGAAGAAAAAAGCATTCATTGGTAAGAA
* * **
2465 AAGTCTATTTATAGTCACTCATTCCTTCAAAAGCTTTANNN
130 AAGTCTATTTATAGTCACCCATTCCTTCAAAAGCCTTA-TT
******* * * * * *
2506 NNNNNNNTAAATGGTTTTATAATCTCATAATTGATTTTAAG-TTAGATTTTTTATA-TTTTTCAT
1 ACTCACTTAAATAGTTTTATAATCACAAAATTAATTTTAAGTTTA-ATTTTTT-TACTTTTTTAT
* * * * * *
2569 TAAAAGAGACA-ATAATTGCAT-TCTTGCCTTAAGAAACGTGTAG-AAAAAGCCATTAATTGAG-
64 TAAAACAGA-ATATAATTGAATGTC-TACCTTGAGAAACGTGAAGAAAAAAG-CATTCATTG-GT
* * * *
2630 AACAAAGGTCTATTTATAGTCTCTCATTCCTTCAAAAGCCTTATT
125 AAGAAAAGTCTATTTATAGTCACCCATTCCTTCAAAAGCCTTATT
2675 ACTTGCA-TTAAATAGTTTTA
1 AC-T-CACTTAAATAGTTTTA
2695 NNNNNNNNNN
Statistics
Matches: 774, Mismatches: 237, Indels: 60
0.72 0.22 0.06
Matches are distributed among these distances:
168 51 0.07
169 199 0.26
170 311 0.40
171 155 0.20
172 49 0.06
173 9 0.01
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.38
Consensus pattern (169 bp):
ACTCACTTAAATAGTTTTATAATCACAAAATTAATTTTAAGTTTAATTTTTTTACTTTTTTATTA
AAACAGAATATAATTGAATGTCTACCTTGAGAAACGTGAAGAAAAAAGCATTCATTGGTAAGAAA
AGTCTATTTATAGTCACCCATTCCTTCAAAAGCCTTATT
Found at i:2416 original size:169 final size:169
Alignment explanation
Indices: 2173--2498 Score: 381
Period size: 169 Copynumber: 1.9 Consensus size: 169
2163 NNNNNNCGCT
* * * *
2173 TTAAATGGTTTTATAATCACATAATTGATTTTGATTTGAATTTTTTTACATTTTAATTAAAACAA
1 TTAAATAGTTTTATAATCACAAAATTAATTTTAATTTGAATTTTTTTACATTTTAATTAAAACAA
* * * * *
2238 AAAATAATTGAATGTCTATC-TTTAGAGACGTGAAGAATAATGCATTCACTGGCAAGAAAAGCCT
66 AAAATAATTGAATGTCTA-CGTTGAGAAACGTGAAGAAAAAAGCATTCACTAGCAAGAAAAGCCT
2302 A-TTATAGTCAC-CTATTCATTCAAAAGCCTTATTACTCAC
130 ATTTATAGTCACTC-ATTCATTCAAAAGCCTTATTACTCAC
* ** **
2341 TTAAATAGTTTTATAATCTCAAAATTAATTTTAAGTTT-AATTTTTTTAGTTTTTTGCTTAAAAC
1 TTAAATAGTTTTATAATCACAAAATTAATTTTAA-TTTGAATTTTTTTA-CATTTTAATTAAAAC
* ** * * * * *
2405 AGATTATAATTGAATGTCTACGTTGAGAAATGTGAAGAAAAAAGCGTTCATTAGTAAGAAAAGTC
64 AAAAAATAATTGAATGTCTACGTTGAGAAACGTGAAGAAAAAAGCATTCACTAGCAAGAAAAGCC
*
2470 TATTTATAGTCACTCATTCCTTCAAAAGC
129 TATTTATAGTCACTCATTCATTCAAAAGC
2499 TTTANNNNNN
Statistics
Matches: 130, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
168 40 0.31
169 66 0.51
170 23 0.18
171 1 0.01
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (169 bp):
TTAAATAGTTTTATAATCACAAAATTAATTTTAATTTGAATTTTTTTACATTTTAATTAAAACAA
AAAATAATTGAATGTCTACGTTGAGAAACGTGAAGAAAAAAGCATTCACTAGCAAGAAAAGCCTA
TTTATAGTCACTCATTCATTCAAAAGCCTTATTACTCAC
Found at i:7264 original size:171 final size:158
Alignment explanation
Indices: 6815--7267 Score: 372
Period size: 168 Copynumber: 2.7 Consensus size: 158
6805 CGAGTAATAA
* * * * * * *
6815 GGCTTTTGAAGGAATGAGTGACAACAAATAGACTTTTCTTGTCAATGAATGCC-TTTTTCTTCAT
1 GGCTTTTGAAGGAATAAGAGACTATAAATAGACTTTTCTTGCCAATGAAT-CCATTTTTTTTCAC
* * * * * * *
6879 GTTTCTCAAGGTCA-ACATTCAATTATAGTCTGTTTTAACTAAAACTATAAAAAANNNNNNNNNN
65 ATTTCTCAAAGT-AGACATTCAATAATAATCTGTTTTAACAAAAAATAT-AAAAA---------C
*
6943 AAATCAATTATGAGATTATAAAACTATTTAAAGCAAGTAT
119 AAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAT
* * * * * *
6983 GGCTTTTGAAGGAATAAGTGACTATAAATGGACTTTTGTTGCCATTGAATCCCTTTTTTTTCACG
1 GGCTTTTGAAGGAATAAGAGACTATAAATAGACTTTTCTTGCCAATGAATCCATTTTTTTTCACA
* * * *
7048 TTTCTTAAAGTAGACATTCAATTATAGTCTGTTTTAACTAAAAATATAAAAACNNNNNNNNNNAA
66 TTTCTCAAAGTAGACATTCAATAATAATCTGTTTTAACAAAAAATATAAAAAC----------AA
*
7113 ATCAATTATGAGATTATAAACCCATTTAAAGCAAGTAAT
121 ATCAATTATGAGATTATAAAACCATTTAAAGCAAGT-AT
* * *
7152 AGAGCTTTTGAAGGAATAGGAGACTATAAATAGATTTTTCTTGCCAATGAAT-GATTTTTTCTTC
1 -G-GCTTTTGAAGGAATAAGAGACTATAAATAGACTTTTCTTGCCAATGAATCCATTTTTT-TTC
* *
7216 ACATTTCTCGAGGTAGACATTCAATAATAATCTGTTTTAACAAAAAATATAA
63 ACATTTCTCAAAGTAGACATTCAATAATAATCTGTTTTAACAAAAAATATAA
7268 TAAAAATTTG
Statistics
Matches: 239, Mismatches: 30, Indels: 29
0.80 0.10 0.10
Matches are distributed among these distances:
167 8 0.03
168 131 0.55
169 2 0.01
170 7 0.03
171 91 0.38
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.34
Consensus pattern (158 bp):
GGCTTTTGAAGGAATAAGAGACTATAAATAGACTTTTCTTGCCAATGAATCCATTTTTTTTCACA
TTTCTCAAAGTAGACATTCAATAATAATCTGTTTTAACAAAAAATATAAAAACAAATCAATTATG
AGATTATAAAACCATTTAAAGCAAGTAT
Found at i:7958 original size:171 final size:171
Alignment explanation
Indices: 6641--9155 Score: 1708
Period size: 171 Copynumber: 14.7 Consensus size: 171
6631 NNNNNNNNNN
* * * *
6641 GGCTTTTGAAGGAAT-AGGTGACTCTAAAAATAGACTTTTCTTGCCAATAAATGCATTTTTCTTC
1 GGCTTTTGAAGGAATGA-GTGA--CTATAAATAGACTTTTCTTGCCAATGAATCCTTTTTTCTTC
* * *
6705 ATGTATCTCAAGGTAGGCATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAAAATTCAACT
63 ACGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATAT-AAAAAAATTCAACT
* ********** *
6770 TAAAATTAATTATGAGATTATNNNNNNNNNNAAAACGAGTAATAA
127 TAAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAA
* * * *
6815 GGCTTTTGAAGGAATGAGTGACAACAAATAGACTTTTCTTGTCAATGAATGCC-TTTTTCTTCAT
1 GGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAAT-CCTTTTTTCTTCAC
* * **********
6879 GTTTCTCAAGGTCA-ACATTCAATTATAGTCTGTTTTAACTAAAACTATAAAAAANNNNNNNNNN
65 GTTTCTCAAGGT-AGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAAATTCAACTTA
*
6943 AAATCAATTATGAGATTATAAAACTATTTAAAGCAAGT-AT--
129 AAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAA
* * * *
6983 GGCTTTTGAAGGAATAAGTGACTATAAATGGACTTTTGTTGCCATTGAATCCCTTTTTT-TTCAC
1 GGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAAT-CCTTTTTTCTTCAC
* * * ***********
7047 GTTTCTTAAAGTAGACATTCAATTATAGTCTGTTTTAACTAAAAATATAAAAACNNNNNNNNNNA
65 GTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAAATTCAACTTAA
* * *
7112 AATCAATTATGAGATTATAAACCCATTTAAAGCAAGTAAT-A
130 AATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAA
* * **
7153 GAGCTTTTGAAGGAAT-AGGAGACTATAAATAGATTTTTCTTGCCAATGAATGATTTTTTCTTCA
1 G-GCTTTTGAAGGAATGA-GTGACTATAAATAGACTTTTCTTGCCAATGAATCCTTTTTTCTTCA
* * * * * * * *
7217 CATTTCTCGAGGTAGACATTCAATAATAATCTGTTTTAACAAAAAATATAATAAAAATTTGATCA
64 CGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAA-AAAAA-TTCAACT
* *** * * *
7282 TAAAATCAATTTTGAGATGGCAAAACCATTTAAAGTGGGTAATAA
127 TAAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAA
* * * * **********
7327 GGCTTTTGAAGAAATGGGTGGCTATAAATGGACTTTTCTTGCCAANNNNNNNNNNTTTCTTCACG
1 GGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATCCTTTTTTCTTCACG
* * * *
7392 TTTCT-AGAGGTAGACATTCAATTTTTGTCTGTTTTAACCACAAATGA-AAAACAATTCAACTTA
66 TTTCTCA-AGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAAT-ATAAAAAAATTCAACTTA
* * *
7455 AAATAAATTATGAGATTATAAAGCTATTTAAAGCTAGTAATAA
129 AAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAA
********** * * * * * *
7498 GGCTNNNNNNNNNNTGGGTGACTATAAATAAACTTTTTTATGCTAATGAAT-TTCTTTTTCCTCA
1 GGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCT-TGCCAATGAATCCT-TTTTTCTTCA
** * * ** * *
7562 CGTTTCTCATCGTAGACATTTAATTATAATAAGTTTTAA-CAAAAAAAGTAAAAAAATTGAACTT
64 CGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATA-TAAAAAAATTCAACTT
********** * *
7626 AAAATCAATTNNNNNNNNNNAAAACCATTTAAAGTGAGTAATAA
128 AAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAA
* * * * * * * *
7670 GCCTTTTGAAGGAATAAGTTATTATAAATGGACTTCTCTTGTCAATAAAT--TTTTTTCTTCACG
1 GGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATCCTTTTTTCTTCACG
* * *
7733 TTTCTCAAGGTACACATTCAATTATAGTCTGTTTTAACCATAAATACAAAAAAATTCAACTTAAA
66 TTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAAATTCAACTTAAA
7798 ATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAA
131 ATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAA
* * * * *
7839 GCCTTTTAAAGTAATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATCCTTTTTTATTCACG
1 GGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATCCTTTTTTCTTCACG
** * * * * *
7904 TTTCTTGAGGTACACATTCAATTATTGTCTATTTTAACCACAAATATAAAAAAATTTAACTTAAA
66 TTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAAATTCAACTTAAA
* ***********
7969 ATCAATTATAAGATTATAAAACTATTTAAANNNNNNNNNNN
131 ATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAA
**** * * * *
8010 NNNNTTTAAAGTAATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATCCTTTTTTCTTCACA
1 GGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATCCTTTTTTCTTCACG
* * * * * * * * * * *
8075 TTTTTCTACGAAGATATTCAAGTATAGTCCGTTTTAACTAATAATGTAAAAAAATTGAACTTAAA
66 TTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAAATTCAACTTAAA
* * *
8140 AT-TAGTATGAGATTATAAAA-TCATTTAAAGCGGGTAATAA
131 ATCAATTATGAGATTATAAAACT-ATTTAAAGCGAGTAATAA
* * ** * ********** * *
8180 GCCTTTTCAAAAAATGAGTGACTATAAATGGACTTTTCTNNNNNNNNNNTGCTTTTTTCTTCATG
1 GGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATCCTTTTTTCTTCACG
** * ** * * * *
8245 TTTCTTGAGGTACACATTTGATTATTGTCTGTTTTAACTAAAAATGTAAAAAAATTTAACTTAAA
66 TTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAAATTCAACTTAAA
* * * * *
8310 ATTAGTTACGAAATTATAAAA-TCATATAAAGCGAGTAATAA
131 ATCAATTATGAGATTATAAAACT-ATTTAAAGCGAGTAATAA
* * * * * ** *
8351 GCCTTTTGAAGGAATGCGTGACTACAAATTGACTTTTCTTGCCATTGAATTTTTTTTTCTTCATG
1 GGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATCCTTTTTTCTTCACG
* ** * * **
8416 TTTCTTAATATAGACATTCAATTATAGTCTGTTTTAACTAAATATATAAAATCATTCAACTTAAA
66 TTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAAATTCAACTTAAA
** *
8481 ATCAATTATGAGATTATAAAACTATTTAAAGAAAGTAATAG
131 ATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAA
* * * * * * *
8522 GGCTTTTGAAAGAATGGGAGACTATAAATGGAATTTTCTTGCCAATGAATACTTTTTTTTTTCAC
1 GGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAAT-CCTTTTTTCTTCAC
* * * * *
8587 GTTTCTCAAGGTA-AGCATTCAATTATAATCTATTTTAACCAAAAATATAAAACAAAATTGATCA
65 GTTTCTCAAGGTAGA-CATTCAATTATAGTCTGTTTTAACCAAAAATAT-AAA-AAAATTCAACT
* * * *
8651 TAAAATCAATTTTGATA-TAGCAAAACTATTTAAAGTG-GATAATAA
127 TAAAATCAATTATGAGATTA-TAAAACTATTTAAAGCGAG-TAATAA
* * ** * ** *
8696 GGCTTTCGAA-GAATAAGTGACTATAAACGGACTTTTCTTGCTAATGAATACGGTTTTT-TTCAT
1 GGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAAT-CCTTTTTTCTTCAC
** **
8759 GTTTCT-AGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGCAAAAAAA-AAAAGCTT
65 GTTTCTCA-AGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAAATTCAA-CTT
********** * *
8822 AAAATCAATTATGAGATTATAANNNNNNNNNNAGCAAGCAATAA
128 AAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAA
** * * * * *
8866 GGCTTTTGAAGGAAAAAGAGACTATAAAT-GAACTTTTCTTGCTAATGAATGCTTGTTTCTTCAT
1 GGCTTTTGAAGGAATGAGTGACTATAAATAG-ACTTTTCTTGCCAATGAATCCTTTTTTCTTCAC
* * * * * *
8930 GTTTCTCAAGTTAGGCATTCAATTATTGTCTGTTTTAACC-AAAATGTAAGAAAATTTAACTTAA
65 GTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAAATTCAACTTAA
***********
8994 AATCAATTATGAGATTATAAAACCNNNNNNNNNNAGTAATAA
130 AATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAA
* * * * * *
9036 GGCTTTTGAAGGAATGGGTGATTATAAATAGACTTTTCTTTCCAATGAATGGC-TTTTTCTACAT
1 GGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAAT-CCTTTTTTCTTCAC
* * ** *
9100 GTTT-TACAA-GCA-ACCATTCAATTATAGTCTATTTTAATGAAAAATGTAAAAAAATT
65 GTTTCT-CAAGGTAGA-CATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAAATT
9156 NNNNNNNNNN
Statistics
Matches: 1826, Mismatches: 467, Indels: 100
0.76 0.20 0.04
Matches are distributed among these distances:
167 1 0.00
168 143 0.08
169 159 0.09
170 301 0.16
171 698 0.38
172 284 0.16
173 168 0.09
174 71 0.04
175 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.35
Consensus pattern (171 bp):
GGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATCCTTTTTTCTTCACG
TTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAAATTCAACTTAAA
ATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAA
Found at i:8030 original size:512 final size:496
Alignment explanation
Indices: 6668--9016 Score: 1032
Period size: 512 Copynumber: 4.6 Consensus size: 496
6658 GTGACTCTAA
* * * * * * **
6668 AAATAGACTTTTCTTGCCAATAAATGCATTTTTCTTCATGTATCTCAAGGTAGGCATTCAATTAT
1 AAATGGACTTCTCTTGTCAATAAAT-CTTTTTTCTTCACGTTTCTCAAGGTACACATTCAATTAT
* * * * *******
6733 AGTCTGTTTTAACCAAAAATATAAAAAAAATTCAACTTAAAATTAATTATGAGATTATNNNNNNN
65 AGTCTGTTTTAACCAAAAATA-CAAAAAAATTCAACTTAAAATCAATTACGAAATTATAAAATCA
*** * * * * * *
6798 NNNAAAACGAGTAATAAGGCTTTTGAAGGAATGAGTGACAACAAATAGACTTTTCTTGTCAATGA
129 TATAAAGCGAGTAATAAGCCTTTTAAAGGAATGCGTGACTACAAATAGACTTTTCTTGCCAATGA
* * * * * *
6863 ATGCC-TTTTTCTTCATGTTTCTCAAGGT-CAACATTCAATTATAGTCTGTTTTAACTAAA-ACT
194 AT-CCTTTTTTATTCACGTTTCTTAAGATAC-ACATTCAATTATAGTCTATTTTAACCAAATA-T
********** *
6925 ATAAAAAANNNNNNNNNNAAATCAATTATGAGATTATAAAACTATTTAAAGCAAGTATGGCTTTT
256 ATAAAAAAATTCAACTTAAAATCAATTATAAGATTATAAAACTATTT-----AA--A-----TTT
* * ** ** * * * *
6990 GAAGGAATAAGTGACTATAAATGGACTTTTGTTGCCATTGAATCCCTTTTTT-TTCACGTTTCT-
309 AAAGTAATGGGTGACTATAAATAAACTTTTCTTGCCAATGAAT-CCTTTTTTCCTCACATTTCTC
* * * * ** * ***********
7053 TAAAGTAGACATTCAATTATAGTCTGTTTTAACTAAAAATA-TAAAAACNNNNNNNNNNAAATCA
373 T-ACGAAGACATTCAAGTATAATAAGTTTTAAC-AAAAAAAGTAAAAAAATTGAACTTAAAATCA
* * * ** * *
7117 ATTATGAGATTATAAACCCATTTAAAGCAAGTAATAGAG-CTTTTGAAGGAATAGGAGACTAT
436 A-TATGAGATTATAAAACCATTTAAAGCGAGTAATA-AGCCTTTTCAAAAAATAAGTGACTAT
* * * * * * * * * *
7179 AAATAGATTTTTCTTGCCAATGAATGATTTTTTCTTCACATTTCTCGAGGTAGACATTCAATAAT
1 AAATGGACTTCTCTTGTCAATAAAT-CTTTTTTCTTCACGTTTCTCAAGGTACACATTCAATTAT
* * * * * * ** * *** *
7244 AATCTGTTTTAACAAAAAATATAATAAAAATTTGATCATAAAATCAATTTTGAGATGGCAAAACC
65 AGTCTGTTTTAACCAAAAATACAA-AAAAA-TTCAACTTAAAATCAATTACGAAATTATAAAATC
* * * * * * * * * * **
7309 ATTTAAAGTGGGTAATAAGGCTTTTGAAGAAATGGGTGGCTATAAATGGACTTTTCTTGCCAANN
128 ATATAAAGCGAGTAATAAGCCTTTTAAAGGAATGCGTGACTACAAATAGACTTTTCTTGCCAATG
******** * * * * * *
7374 NNNNNNNNTTTCTTCACGTTTC-TAGAGGTAGACATTCAATTTTTGTCTGTTTTAACCACAA-AT
193 AATCCTTTTTTATTCACGTTTCTTA-AGATACACATTCAATTATAGTCTATTTTAACCA-AATAT
* * * * *
7437 GA-AAAACAATTCAACTTAAAATAAATTATGAGATTATAAAGCTATTTAAAGCTAGTAATAAGGC
256 -ATAAAAAAATTCAACTTAAAATCAATTATAAGATTATAAAACTATTTAAA--T--T--TAAAG-
** * * * *
7501 TNNNNNNNNNNTGGGTGACTATAAATAAACTTTTTTATGCTAATGAAT-TTCTTTTTCCTCACGT
313 T--------AATGGGTGACTATAAATAAACTTTTCT-TGCCAATGAATCCT-TTTTTCCTCACAT
* * *
7565 TTCTC-ATCGTAGACATTTAATTATAATAAGTTTTAACAAAAAAAGTAAAAAAATTGAACTTAAA
368 TTCTCTA-CGAAGACATTCAAGTATAATAAGTTTTAACAAAAAAAGTAAAAAAATTGAACTTAAA
******** * * ** * *
7629 ATCAAT-TNNNNNNNNNNAAAACCATTTAAAGTGAGTAATAAGCCTTTTGAAGGAATAAGTTATT
432 ATCAATAT--GAGATTATAAAACCATTTAAAGCGAGTAATAAGCCTTTTCAAAAAATAAGTGACT
7693 AT
495 AT
7695 AAATGGACTTCTCTTGTCAATAAAT-TTTTTTCTTCACGTTTCTCAAGGTACACATTCAATTATA
1 AAATGGACTTCTCTTGTCAATAAATCTTTTTTCTTCACGTTTCTCAAGGTACACATTCAATTATA
* * *
7759 GTCTGTTTTAACCATAAATACAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAA-CTAT
66 GTCTGTTTTAACCAAAAATACAAAAAAATTCAACTTAAAATCAATTACGAAATTATAAAATC-AT
* * * *
7823 TTAAAGCGAGTAATAAGCCTTTTAAAGTAATGGGTGACTATAAATAGACTTTTCTTGCCAATGAA
130 ATAAAGCGAGTAATAAGCCTTTTAAAGGAATGCGTGACTACAAATAGACTTTTCTTGCCAATGAA
* * *
7888 TCCTTTTTTATTCACGTTTCTTGAGGTACACATTCAATTATTGTCTATTTTAACCACAA-ATATA
195 TCCTTTTTTATTCACGTTTCTTAAGATACACATTCAATTATAGTCTATTTTAACCA-AATATATA
*
7952 AAAAAATTTAACTTAAAATCAATTATAAGATTATAAAACTATTTAAANNNNNNNNNNNNNNNTTT
259 AAAAAATTCAACTTAAAATCAATTATAAGATTATAAAACTATTTAAA---------------TTT
* * *
8017 AAAGTAATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATCCTTTTTTCTTCACATTTTTCT
309 AAAGTAATGGGTGACTATAAATAAACTTTTCTTGCCAATGAATCCTTTTTTCCTCACATTTCTCT
* * ** * * * * *
8082 ACGAAGATATTCAAGTATAGTCCGTTTTAACTAATAATGTAAAAAAATTGAACTTAAAATTAGTA
374 ACGAAGACATTCAAGTATAATAAGTTTTAACAAAAAAAGTAAAAAAATTGAACTTAAAATCAATA
* * *
8147 TGAGATTATAAAATCATTTAAAGCGGGTAATAAGCCTTTTCAAAAAATGAGTGACTAT
439 TGAGATTATAAAACCATTTAAAGCGAGTAATAAGCCTTTTCAAAAAATAAGTGACTAT
* ********** * ** **
8205 AAATGGACTTTTCTNNNNNNNNNNTGCTTTTTTCTTCATGTTTCTTGAGGTACACATTTGATTAT
1 AAATGGACTTCTCTTGTCAATAAAT-CTTTTTTCTTCACGTTTCTCAAGGTACACATTCAATTAT
* * ** * * *
8270 TGTCTGTTTTAACTAAAAATGTAAAAAAATTTAACTTAAAATTAGTTACGAAATTATAAAATCAT
65 AGTCTGTTTTAACCAAAAATACAAAAAAATTCAACTTAAAATCAATTACGAAATTATAAAATCAT
* * *
8335 ATAAAGCGAGTAATAAGCCTTTTGAAGGAATGCGTGACTACAAATTGACTTTTCTTGCCATTGAA
130 ATAAAGCGAGTAATAAGCCTTTTAAAGGAATGCGTGACTACAAATAGACTTTTCTTGCCAATGAA
** * * * * * *
8400 TTTTTTTTTCTTCATGTTTCTTAATATAGACATTCAATTATAGTCTGTTTTAACTAAATATATAA
195 TCCTTTTTTATTCACGTTTCTTAAGATACACATTCAATTATAGTCTATTTTAACCAAATATATAA
** *
8465 AATCATTCAACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGAAAGTAATAGGGCTTTTG
260 AAAAATTCAACTTAAAATCAATTATAAGATTATAAAACTA-TT--------TAA-A-----TTT-
* * * ** *
8530 AAAG-AATGGGAGACTATAAATGGAA-TTTTCTTGCCAATGAATACTTTTTTTTTTCACGTTTCT
309 AAAGTAATGGGTGACTATAAAT-AAACTTTTCTTGCCAATGAAT-CCTTTTTTCCTCACATTTCT
* * * * * * *
8593 CAAGGTAAG-CATTCAATTATAATCTA-TTTTAACCAAAAATA-TAAAACAAAATTGATCATAAA
372 CTACG-AAGACATTCAAGTATAAT-AAGTTTTAA-CAAAAAAAGT-AAA-AAAATTGAACTTAAA
** * * * * * *
8655 ATCAAT-TTTGATATAGCAAAACTATTTAAAGTG-GATAATAAGGC-TTTCGAAGAATAAGTGAC
432 ATCAATATGAGAT-TA-TAAAACCATTTAAAGCGAG-TAATAAGCCTTTTCAAAAAATAAGTGAC
8717 TAT
494 TAT
* * * * * *
8720 AAACGGACTTTTCTTG-CTAATGAATACGGTTTTT-TTCATGTTTCT-AGAGGTAGACATTCAAT
1 AAATGGACTTCTCTTGTC-AATAAAT-C-TTTTTTCTTCACGTTTCTCA-AGGTACACATTCAAT
* ** * * **
8782 TATAGTCTGTTTTAACCAAAAATGCAAAAAAA-AAAAGCTTAAAATCAATTATGAGATTATAANN
62 TATAGTCTGTTTTAACCAAAAATACAAAAAAATTCAA-CTTAAAATCAATTACGAAATTATAAAA
******** * * * * *** * * *
8846 NNNNNNNNAGCAAGCAATAAGGCTTTTGAAGGAAAAAGAGACTATAAAT-GAACTTTTCTTGCTA
126 TCATATAAAGCGAGTAATAAGCCTTTTAAAGGAATGCGTGACTACAAATAG-ACTTTTCTTGCCA
* * * * * * ** * *
8910 ATGAATGCTTGTTTCTTCATGTTTCTCAAGTTAGGCATTCAATTATTGTCTGTTTTAACCAAA-A
190 ATGAATCCTTTTTTATTCACGTTTCTTAAGATACACATTCAATTATAGTCTATTTTAACCAAATA
* * * *
8974 TGTAAGAAAATTTAACTTAAAATCAATTATGAGATTATAAAAC
255 TATAAAAAAATTCAACTTAAAATCAATTATAAGATTATAAAAC
9017 CNNNNNNNNN
Statistics
Matches: 1411, Mismatches: 349, Indels: 153
0.74 0.18 0.08
Matches are distributed among these distances:
502 1 0.00
504 1 0.00
505 1 0.00
506 3 0.00
507 2 0.00
510 56 0.04
511 160 0.11
512 608 0.43
513 55 0.04
514 112 0.08
515 259 0.18
516 142 0.10
520 1 0.00
521 7 0.00
522 1 0.00
523 1 0.00
525 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.35
Consensus pattern (496 bp):
AAATGGACTTCTCTTGTCAATAAATCTTTTTTCTTCACGTTTCTCAAGGTACACATTCAATTATA
GTCTGTTTTAACCAAAAATACAAAAAAATTCAACTTAAAATCAATTACGAAATTATAAAATCATA
TAAAGCGAGTAATAAGCCTTTTAAAGGAATGCGTGACTACAAATAGACTTTTCTTGCCAATGAAT
CCTTTTTTATTCACGTTTCTTAAGATACACATTCAATTATAGTCTATTTTAACCAAATATATAAA
AAAATTCAACTTAAAATCAATTATAAGATTATAAAACTATTTAAATTTAAAGTAATGGGTGACTA
TAAATAAACTTTTCTTGCCAATGAATCCTTTTTTCCTCACATTTCTCTACGAAGACATTCAAGTA
TAATAAGTTTTAACAAAAAAAGTAAAAAAATTGAACTTAAAATCAATATGAGATTATAAAACCAT
TTAAAGCGAGTAATAAGCCTTTTCAAAAAATAAGTGACTAT
Found at i:8154 original size:341 final size:342
Alignment explanation
Indices: 6668--9015 Score: 1222
Period size: 341 Copynumber: 6.9 Consensus size: 342
6658 GTGACTCTAA
* * * * * * *
6668 AAATAGACTTTTCTTGCCAATAAATGCATTTTTCTTCATGTATCTCAAGGTAGGCATTCAATTAT
1 AAATAGACTTTTCTTGCCAATGAATCCTTTTTTCTTCATGTTTCTTAAGATAGACATTCAATTAT
* * * *******
6733 AGTCTGTTTTAACCAAAAATATAAAAAAAATTCAACTTAAAATTAATTATGAGATTATNNNNNNN
66 AGTCTGTTTTAACTAATAATAT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTA
*** * * * * * * * * *
6798 NNNAAAACGAGTAATAAGGCTTTTGAAGGAATGAGTGACAACAAATAGACTTTTCTTGTCAATGA
130 TTTAAAGCGAGTAATAAGCCTTTTCAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGA
* * ** * * * *
6863 ATGCC-TTTTTCTTCATGTTTCTCAAGGT-CAACATTCAATTATAGTCTGTTTTAACTAAAACTA
195 AT-CCTTTTTTATTCACGTTTCTTGAGGTAC-ACATTCAATTATTGTCTATTTTAACCAAAAATA
********** * * * * *
6926 TAAAAAANNNNNNNNNNAAATCAATTATGAGATTATAAAA-CTATTTAAAGCAAGT-AT--GGCT
258 TAAAAAAATTTAACTTAAAATCAATTACGAAATTATAAAATC-ATATAAAGCGAGTAATAAGCCT
* ** *
6987 TTTGAAGGAATAAGTGACTAT
322 TTTAAAGGAATGCGTGACTAC
* * * *
7008 AAATGGACTTTTGTTGCCATTGAATCCCTTTTTT-TTCACGTTTCTTAA-AGTAGACATTCAATT
1 AAATAGACTTTTCTTGCCAATGAAT-CCTTTTTTCTTCATGTTTCTTAAGA-TAGACATTCAATT
* *********** * *
7071 ATAGTCTGTTTTAACTAAAAATATAAAAACNNNNNNNNNNAAATCAATTATGAGATTATAAACCC
64 ATAGTCTGTTTTAACTAATAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACT
* * * * * * *
7136 ATTTAAAGCAAGTAATAGAG-CTTTTGAAGGAATAGGAGACTATAAATAGATTTTTCTTGCCAAT
129 ATTTAAAGCGAGTAATA-AGCCTTTTCAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAAT
** * * * * * ** * *
7200 GAATGATTTTTTCTTCACATTTCTCGAGGTAGACATTCAATAATAATCTGTTTTAACAAAAAATA
193 GAATCCTTTTTTATTCACGTTTCTTGAGGTACACATTCAATTATTGTCTATTTTAACCAAAAATA
* * ** * *** * * * * *
7265 TAATAAAAATTTGATCATAAAATCAATTTTGAGATGGCAAAACCATTTAAAGTGGGTAATAAGGC
258 TAA-AAAAATTT-AACTTAAAATCAATTACGAAATTATAAAATCATATAAAGCGAGTAATAAGCC
* * * * *
7330 TTTTGAAGAAATGGGTGGCTAT
321 TTTTAAAGGAATGCGTGACTAC
* ********** * * *
7352 AAATGGACTTTTCTTGCCAANNNNNNNNNNTTTCTTCACGTTTC-TAGAGGTAGACATTCAATTT
1 AAATAGACTTTTCTTGCCAATGAATCCTTTTTTCTTCATGTTTCTTA-AGATAGACATTCAATTA
* * * * *
7416 TTGTCTGTTTTAACCACA-AATGA-AAAACAATTCAACTTAAAATAAATTATGAGATTATAAAGC
65 TAGTCTGTTTTAACTA-ATAAT-ATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAC
* * ********** ** * *
7479 TATTTAAAGCTAGTAATAAGGCTNNNNNNNNNNTGGGTGACTATAAATAAACTTTTTTATGCTAA
128 TATTTAAAGCGAGTAATAAGCCTTTTCAAAGAATGGGTGACTATAAATGGACTTTTCT-TGCCAA
* ** * * * * ** *
7544 TGAAT-TTCTTTTTCCTCACGTTTC-TCATCGTAGACATTTAATTATAAT-AAGTTTTAA-CAAA
192 TGAATCCT-TTTTTATTCACGTTTCTTGA-GGTACACATTCAATTATTGTCTA-TTTTAACCAAA
* * ********** * * *
7605 AAAAGTAAAAAAATTGAACTTAAAATCAATTNNNNNNNNNNAAAACCATTTAAAGTGAGTAATAA
254 AATA-TAAAAAAATTTAACTTAAAATCAATTACGAAATTATAAAATCATATAAAGCGAGTAATAA
* ** * * *
7670 GCCTTTTGAAGGAATAAGTTATTAT
318 GCCTTTTAAAGGAATGCGTGACTAC
* * * * * * * *
7695 AAATGGACTTCTCTTGTCAATAAAT--TTTTTTCTTCACGTTTCTCAAGGTACACATTCAATTAT
1 AAATAGACTTTTCTTGCCAATGAATCCTTTTTTCTTCATGTTTCTTAAGATAGACATTCAATTAT
* *
7758 AGTCTGTTTTAAC-CATAAATACAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTA
66 AGTCTGTTTTAACTAAT-AATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTA
*
7822 TTTAAAGCGAGTAATAAGCCTTTT-AAAGTAATGGGTGACTATAAATAGACTTTTCTTGCCAATG
130 TTTAAAGCGAGTAATAAGCCTTTTCAAAG-AATGGGTGACTATAAATGGACTTTTCTTGCCAATG
*
7886 AATCCTTTTTTATTCACGTTTCTTGAGGTACACATTCAATTATTGTCTATTTTAACCACAAATAT
194 AATCCTTTTTTATTCACGTTTCTTGAGGTACACATTCAATTATTGTCTATTTTAACCAAAAATAT
* * ***************
7951 AAAAAAATTTAACTTAAAATCAATTA-TAAGATTATAAAA-CTATTTAAANNNNNNNNNNNNNNN
259 AAAAAAATTTAACTTAAAATCAATTACGAA-ATTATAAAATC-ATATAAAGCGAGTAATAAGCCT
* * *
8014 TTTAAAGTAATGGGTGACTAT
322 TTTAAAGGAATGCGTGACTAC
* * * *
8035 AAATAGACTTTTCTTGCCAATGAATCCTTTTTTCTTCACATTTTTC-TACGA-AGATATTCAAGT
1 AAATAGACTTTTCTTGCCAATGAATCCTTTTTTCTT--CATGTTTCTTAAGATAGACATTCAATT
* * * * *
8098 ATAGTCCGTTTTAACTAATAATGTAAAAAAATTGAACTTAAAAT-TAGTATGAGATTATAAAA-T
64 ATAGTCTGTTTTAACTAATAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACT
* * * *******
8161 CATTTAAAGCGGGTAATAAGCCTTTTCAAAAAATGAGTGACTATAAATGGACTTTTCTNNNNNNN
129 -ATTTAAAGCGAGTAATAAGCCTTTTCAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAAT
*** * * * ** * * *
8226 NNNTGCTTTTTTCTTCATGTTTCTTGAGGTACACATTTGATTATTGTCTGTTTTAACTAAAAATG
193 GAATCCTTTTTTATTCACGTTTCTTGAGGTACACATTCAATTATTGTCTATTTTAACCAAAAATA
* *
8291 TAAAAAAATTTAACTTAAAATTAGTTACGAAATTATAAAATCATATAAAGCGAGTAATAAGCCTT
258 TAAAAAAATTTAACTTAAAATCAATTACGAAATTATAAAATCATATAAAGCGAGTAATAAGCCTT
*
8356 TTGAAGGAATGCGTGACTAC
323 TTAAAGGAATGCGTGACTAC
* * ** *
8376 AAATTGACTTTTCTTGCCATTGAATTTTTTTTTCTTCATGTTTCTTAATATAGACATTCAATTAT
1 AAATAGACTTTTCTTGCCAATGAATCCTTTTTTCTTCATGTTTCTTAAGATAGACATTCAATTAT
**
8441 AGTCTGTTTTAACTAA-ATATATAAAATCATTCAACTTAAAATCAATTATGAGATTATAAAACTA
66 AGTCTGTTTTAACTAATA-ATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTA
** * * * * *
8505 TTTAAAGAAAGTAATAGGGCTTTTGAAAGAATGGGAGACTATAAATGGAATTTTCTTGCCAATGA
130 TTTAAAGCGAGTAATAAGCCTTTTCAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGA
* * ** **
8570 ATACTTTTTTTTTTCACGTTTCTCAAGGTA-AGCATTCAATTATAATCTATTTTAACCAAAAATA
195 AT-CCTTTTTTATTCACGTTTCTTGAGGTACA-CATTCAATTATTGTCTATTTTAACCAAAAATA
* * * ** * * * *
8634 TAAAACAAAATTGATCATAAAATCAATTTTGATA-TAGCAAAA-CTATTTAAAGTG-GATAATAA
258 T-AAA-AAAATTTAACTTAAAATCAATTACGAAATTA-TAAAATC-ATATAAAGCGAG-TAATAA
* ** ** *
8696 GGCTTTCGAA-GAATAAGTGACTAT
318 GCCTTTTAAAGGAATGCGTGACTAC
** * ** *
8720 AAACGGACTTTTCTTGCTAATGAATACGGTTTTT-TTCATGTTTC-TAGAGGTAGACATTCAATT
1 AAATAGACTTTTCTTGCCAATGAAT-CCTTTTTTCTTCATGTTTCTTA-AGATAGACATTCAATT
* * ** ** ***
8783 ATAGTCTGTTTTAACCAAAAATGCAAAAAAA-AAAAGCTTAAAATCAATTATGAGATTATAANNN
64 ATAGTCTGTTTTAACTAATAATATAAAAAAATTCAA-CTTAAAATCAATTATGAGATTATAAAAC
******* * * * * * *** * * *
8847 NNNNNNNAGCAAGCAATAAGGCTTTTGAAGGAAAAAGAGACTATAAATGAACTTTTCTTGCTAAT
128 TATTTAAAGCGAGTAATAAGCCTTTTCAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAAT
* * * * ** * ** * *
8912 GAATGCTTGTTTCTTCATGTTTCTCAAGTTAGGCATTCAATTATTGTCTGTTTTAACC-AAAATG
193 GAATCCTTTTTTATTCACGTTTCTTGAGGTACACATTCAATTATTGTCTATTTTAACCAAAAATA
* * *
8976 TAAGAAAATTTAACTTAAAATCAATTATGAGATTATAAAA
258 TAAAAAAATTTAACTTAAAATCAATTACGAAATTATAAAA
9016 CCNNNNNNNN
Statistics
Matches: 1534, Mismatches: 414, Indels: 120
0.74 0.20 0.06
Matches are distributed among these distances:
339 136 0.09
340 223 0.15
341 429 0.28
342 135 0.09
343 178 0.12
344 329 0.21
345 104 0.07
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.35
Consensus pattern (342 bp):
AAATAGACTTTTCTTGCCAATGAATCCTTTTTTCTTCATGTTTCTTAAGATAGACATTCAATTAT
AGTCTGTTTTAACTAATAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTAT
TTAAAGCGAGTAATAAGCCTTTTCAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAA
TCCTTTTTTATTCACGTTTCTTGAGGTACACATTCAATTATTGTCTATTTTAACCAAAAATATAA
AAAAATTTAACTTAAAATCAATTACGAAATTATAAAATCATATAAAGCGAGTAATAAGCCTTTTA
AAGGAATGCGTGACTAC
Found at i:9662 original size:171 final size:170
Alignment explanation
Indices: 9364--10414 Score: 725
Period size: 171 Copynumber: 6.2 Consensus size: 170
9354 NNNNNNNNNN
* *
9364 ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGTTTTTGAAGGAATG-GAAGACTATAA
1 ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGAAGACTATAA
* * * * * *
9428 ATGAACTTTTCTTGCCAATGACTGCTTTTTTCTTCATATTTCTTAAGGTAGACATTTAATTATAG
66 ATGGACTTTTCTTACCAATGAATGC-TTTTTCTACACATTTC-TAAGGTAGACATTCAATTATAG
9493 TCTGTTTGAACCAAAAGTGTAAAAAAATTTAACTTAAAATCT
129 TCTGTTTGAACCAAAAGTGTAAAAAAATTTAACTTAAAATCT
* * * *
9535 GTTATGTGATTATAAAATCATTTAAAGCTAGTAATAAGGCTTTTGCAA-GAATGAG-AGACTATA
1 ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG-AAGGAATGAGAAGACTATA
* * * *
9598 AATGGATTTTTTTTACCACTGAATGGCTTTTTCTACACATTTTCTAAGGTA-AGTATTCAATTAT
65 AATGGACTTTTCTTACCAATGAAT-GCTTTTTCTACACA-TTTCTAAGGTAGA-CATTCAATTAT
** * * *
9662 AGTCTGTTTGAATGAAAAATATAAAAAAATTTAACTTAAAATCA
127 AGTCTGTTTGAACCAAAAGTGTAAAAAAATTTAACTTAAAATCT
********** * * *
9706 ATNNNNNNNNNNTAAAACCATTTAAAGAGAGTAATAAGGCTTTTCAAGGAATGAG-TGACTAT-A
1 ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGAAGACTATAA
* * * * * * * *
9769 ATGGA-GTTTCTTGCCAACGACTGACTTTTTTTAAATATTTTTCTAA-GTCGACATTCAATTATA
66 ATGGACTTTTCTTACCAATGAATG-CTTTTTCTACACA--TTTCTAAGGTAGACATTCAATTATA
* * * * * *
9832 ATCTATTTTAACTAATAA-TGTAAAAGAATTTAAATCTAAAAT-T
128 GTCTGTTTGAACCAA-AAGTGTAAAAAAATTTAACT-TAAAATCT
** *
9875 AATTACAAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGATGGAAT-AGAAGACTATA
1 -ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGAAGACTATA
* * * * *
9939 AATTGACTTTTCTTAGCAATGAATGCTTTTGTCTTCACATTTCTGGAGGTAGACGTTCAATTATA
65 AATGGACTTTTCTTACCAATGAATGCTTTT-TCTACACATTTCT-AAGGTAGACATTCAATTATA
* * *
10004 GTCTGTTTTAACCAAAAGTGTAAAACAATTTAACTTAAAATCA
128 GTCTGTTTGAACCAAAAGTGTAAAAAAATTTAACTTAAAATCT
********** * ** *
10047 ATTATGAGATTNNNNNNNNNNTTAAAGCGAATAATAAGGCTTTTGAAGGAATG-GGTGACTATAG
1 ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGAAGACTATAA
* * * *
10111 ATGGACTTTTCTTATCAATGAATTGCTTTTT-T-CACATGTTTCCCAATGTAGGCATTCAATTAT
66 ATGGACTTTTCTTACCAATGAA-TGCTTTTTCTACACA--TTT-CTAAGGTAGACATTCAATTAT
** * * ***********
10174 AGTCTGTTTGAATGAAAAATGTAAAAACAA-TCANNNNNNNNNNA
127 AGTCTGTTTGAACCAAAAGTGTAAAAA-AATTTAACTTAAAATCT
* * ***
10218 ATTATGAGATTATAAAACTATTTAAAGCGAGCAATAAGG-TTTTGAAGGAATG-GGTTACTATAA
1 ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGAAGACTATAA
* ** **********
10281 ATGGACTTTTCTTATCAATGAATGCATTTTTCCT-CATGTTTCTCAAGGTAGACNNNNNNNNNNA
66 ATGGACTTTTCTTACCAATGAATGC-TTTTT-CTACACATTTCT-AAGGTAGACATTCAATTATA
* * * * * * *
10345 GTTTGTTTTAACCAAAAATGTAAACAAATTTAACTTTAAACCA
128 GTCTGTTTGAACCAAAAGTGTAAAAAAATTTAACTTAAAATCT
10388 ATTATGAGATTATAAAACCATTTAAAG
1 ATTATGAGATTATAAAACCATTTAAAG
10415 TNNNNNNNNN
Statistics
Matches: 673, Mismatches: 176, Indels: 63
0.74 0.19 0.07
Matches are distributed among these distances:
168 1 0.00
169 70 0.10
170 187 0.28
171 334 0.50
172 81 0.12
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.35
Consensus pattern (170 bp):
ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGAAGACTATAA
ATGGACTTTTCTTACCAATGAATGCTTTTTCTACACATTTCTAAGGTAGACATTCAATTATAGTC
TGTTTGAACCAAAAGTGTAAAAAAATTTAACTTAAAATCT
Found at i:10000 original size:341 final size:331
Alignment explanation
Indices: 9376--10050 Score: 708
Period size: 341 Copynumber: 2.0 Consensus size: 331
9366 TATGAGATTA
* * * *
9376 TAAAACCATTTAAAGCGAGTAATAAAGTTTTTGAAGGAATGGAAGACTATAAATGAACTTTTCTT
1 TAAAACCATTTAAAGAGAGTAATAAAGCTTTTCAAGGAATGGAAGACTATAAATGAACGTTTCTT
* ** * * *
9441 GCCAATGACTGCTTTTTTCTTCATATTTCTTAAGGTAGACATTTAATTATAGTCTGTTTGAACCA
66 GCCAACGACTGCTTTTTTCTAAATATTTCTTAAGGTAGACATTCAATTATAATCTATTTGAACCA
* * *** * *
9506 AAAGTGTAAAAAAATTTAACTTAAAATCTGTTATGTGATTATAAAATCATTTAAAGCTAGTAATA
131 AAAGTGTAAAAAAATTTAAATTAAAATCTATTACAAGATTATAAAACCATTTAAAGCGAGTAATA
* * *
9571 AGGCTTTTGCAAGAATGAGAGACTATAAATGGATTTTTTTTACCACTGAATGGCTTTTTCTACAC
196 AGGCTTTTGCAAGAATGAGAGACTATAAATGGACTTTTCTTACCAATGAATGGCTTTTTCTACAC
**
9636 ATTTTCTAAGGTAAGTATTCAATTATAGTCTGTTTGAATGAAAAATATAAAAAAATTTAACTTAA
261 ATTTTCTAAGGTAAG-ATTCAATTATAGTCTGTTTGAACCAAAAATATAAAAAAATTTAACTTAA
9701 AATCAAT
325 AATCAAT
* *
9708 NNNNNNNNNNTAAAACCATTTAAAGAGAGTAATAAGGCTTTTCAAGGAAT-GAGTGACTAT-AAT
1 ----------TAAAACCATTTAAAGAGAGTAATAAAGCTTTTCAAGGAATGGA-AGACTATAAAT
* * *
9771 GGA-GTTTCTTGCCAACGACTGACTTTTTT-TAAATATTTTTCTAA-GTCGACATTCAATTATAA
55 GAACGTTTCTTGCCAACGACTG-CTTTTTTCTAAATATTTCT-TAAGGTAGACATTCAATTATAA
* * *
9833 TCTATTTTAACTAATAA-TGTAAAAGAATTTAAATCTAAAAT-TAATTACAAGATTATAAAACCA
118 TCTATTTGAACCAA-AAGTGTAAAAAAATTTAAAT-TAAAATCT-ATTACAAGATTATAAAACCA
* * *
9896 TTTAAAGCGAGTAATAAGGCTTTTG-ATGGAAT-AGAAGACTATAAATTGACTTTTCTTAGCAAT
180 TTTAAAGCGAGTAATAAGGCTTTTGCA-AGAATGAG-AGACTATAAATGGACTTTTCTTACCAAT
* * *
9959 GAAT-GCTTTTGTCTTCACA-TTTCTGGAGGT-AGACGTTCAATTATAGTCTGTTTTAACCAAAA
243 GAATGGCTTTT-TCTACACATTTTCT-AAGGTAAGA--TTCAATTATAGTCTGTTTGAACCAAAA
* * *
10021 GTGTAAAACAATTTAACTTAAAATCAAT
304 ATATAAAAAAATTTAACTTAAAATCAAT
10049 TA
1 TA
10051 TGAGATTNNN
Statistics
Matches: 282, Mismatches: 39, Indels: 35
0.79 0.11 0.10
Matches are distributed among these distances:
331 2 0.01
339 1 0.00
340 82 0.29
341 155 0.55
342 42 0.15
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.36
Consensus pattern (331 bp):
TAAAACCATTTAAAGAGAGTAATAAAGCTTTTCAAGGAATGGAAGACTATAAATGAACGTTTCTT
GCCAACGACTGCTTTTTTCTAAATATTTCTTAAGGTAGACATTCAATTATAATCTATTTGAACCA
AAAGTGTAAAAAAATTTAAATTAAAATCTATTACAAGATTATAAAACCATTTAAAGCGAGTAATA
AGGCTTTTGCAAGAATGAGAGACTATAAATGGACTTTTCTTACCAATGAATGGCTTTTTCTACAC
ATTTTCTAAGGTAAGATTCAATTATAGTCTGTTTGAACCAAAAATATAAAAAAATTTAACTTAAA
ATCAAT
Found at i:11556 original size:171 final size:169
Alignment explanation
Indices: 11264--13109 Score: 1167
Period size: 171 Copynumber: 10.8 Consensus size: 169
11254 NNNNNNNNNN
* * ** * * *
11264 GAAGGAATGGGTGACTGTAAATAAACTTTTCTTCTCAATGAATAGTTTTTTCTAT-ACATTTTTT
1 GAAGGAATGAGTGACTATAAATGGACTTTTCTT-TCAATGAAT-GCTTTTTCT-TCACGTTTCTT
** * * ** *
11328 GAGCCAGGCATTCAATTATAGTATGTTTTAATAAAAAATGTAAAAAACTTCAACTTAAAAT-ATA
63 GAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCA-A
* * * *
11392 TTATGAGATTATAAAACCTTTTAAAACGAGTAGTAAGGCTTCT
127 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
* * *
11435 GAAGGAATGAGTGACTATAAATGGAGTTTTCTTGGCAATGAATGTTTTTTTCTTCACGTTTCTTG
1 GAAGGAATGAGTGACTATAAATGGACTTTTCTT-TCAATGAATG-CTTTTTCTTCACGTTTCTTG
* * * * ****
11500 GGGTAGACATTCAATTATAGTATGTTTTAACCAAAAGTGTAAAAAAATTAAACTTAAAATCGNNN
64 AGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATT
******* *
11565 NNNNNNNTATAAAACCATTTAAAGCGAGTAATTAGGCTTTT
129 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
* * ** * **
11606 GAAGGAATGAGTGACCATAAATGGACTTTTCTTACCAATGAATAGCTTTTTCCACACCATTTCCC
1 GAAGGAATGAGTGACTATAAATGGACTTTTCTT-TCAATGAAT-GCTTTTTCTTCA-CGTTTCTT
** * * * *
11671 GACATAGGCATTCAATTATAGTATGTTTTAA-TAAAAATGTAAAAACGA-TCAACTTAAAATCAA
63 GAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAA-AATTCAACTTAAAATCAA
********** *
11734 TTATGAGANNNNNNNNNNATTTAAAGCGAGCAATAAGG-TTTT
127 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
* * * * * * ** **
11776 AAAGGAATGGGTTACTATAAATAGACTTCTCTATCAAATGAATGCCTTTTTCTTCATTTTTCTCA
1 GAAGGAATGAGTGACTATAAATGGACTTTTCTTTC-AATGAATG-CTTTTTCTTCACGTTTCTTG
* * * * * *
11841 AGGTAAACATTCAATTATAATCTATTTTAACTAAAAATATAAAAAAAAATTGAACTTAAAATCAA
64 AGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGT--AAAAAAATTCAACTTAAAATCAA
* * * * * **
11906 TAAAGAGATTGTAAAACCATTTAAAGTGAATAATAAGGCTCCT
127 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
* * * *
11949 AAAGGAAT-AGGTGACTATAAATGGACTTTTTCTATCAATGAATGCTTTTTTCTTCATGTTTCTC
1 GAAGGAATGA-GTGACTATAAATGGAC-TTTTCTTTCAATGAATGC-TTTTTCTTCACGTTTCTT
* ********** * *
12013 AAGGTAGACANNNNNNNNNNGTTTGTTTTAACCAAAAAAGTAAAAAAATTCAACTTAAAAT-AAT
63 GAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAA-
*
12077 TTATGAGATTATAAAACCTTTTAAAGCGAGTAATAAGGCTTTT
127 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
********* * * * * * *
12120 NNNNNNNNNNA-AGACTATAAATGGACTTTTCTTCTAAATAAATGTGTTTTTCTACACGTTTCTC
1 -GAAGGAATGAGTGACTATAAATGGACTTTTCTT-TCAATGAATG-CTTTTTCTTCACGTTTCTT
* **
12184 GAGGTA-AGCTTTCAATTATAGTCTGTTTTTAATGAAAAATGT-AAAAAATTCAACTTAAAATCA
63 GAGGTAGA-CATTCAATTATAGTCTG-TTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCA
********** *
12247 ATTANNNNNNNNNNAAACCATTTAAAGTGAGTAATAAGGCTTTT
126 ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
* ** * * * *
12291 GAAGGAATAAGAAACTATAAATAGACTTTTCTTGCTAATAAATGGCTTTTTCTAT-ATG-TTCTT
1 GAAGGAATGAGTGACTATAAATGGACTTTTCTTTC-AATGAAT-GCTTTTTCT-TCACGTTTCTT
* * ** *
12354 GAGGCA-AGCATTTAATTATAGTCTGTTTTAATGAAAAATGT-AAAAAATTCGAC-T-AAATACA
63 GAGGTAGA-CATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAAT-CA
* * * *
12415 ATTATGAGATTGTAAAACCATTTAAGGCTAGTAATAAGGCTTTC
126 ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
* * * * * * * * * * *
12459 AAAGGAATGGGAGACTATAAATGGATTTTTTTTTCAAATAAATAGGTTTTTCTACACATTTCCTA
1 GAAGGAATGAGTGACTATAAATGGACTTTTCTTTC-AATGAAT-GCTTTTTCTTCACGTTTCTTG
* * * *
12524 AGGCAAACATTCAATTATAGTTTGTTTTAA-CAAAAACGT-AAAAAATTCAACTTAAAATCAATT
64 AGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATT
* * **********
12587 TTAAGATTATAAAACCATTTNNNNNNNNNNATAAGGCTTTT
129 ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
* * * * * *
12628 GAAGAAATGGGTGACTATAAACGGACTTTTCTTGTCAAAGAATGCTTTTTCCTCATGTTTCTTGA
1 GAAGGAATGAGTGACTATAAATGGACTTTTCTT-TCAATGAATGCTTTTTCTTCACGTTTCTTGA
* * * * * * * *
12693 GGTACACATTCGATCATAGTCTGTTTTAACGAAAAATATAAAACAATTCAACTTAAAATGAGTTA
65 GGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTA
* **********
12758 TGAGATTATAAAACTATTTAAAGCNNNNNNNNNNGCTTTT
130 TGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
* * * * * *
12798 GAAGGAATGGGAGACTATAAATAGACTTTTCTTCTTAATGAATAGCTTTTTCTACACGTTTCTTA
1 GAAGGAATGAGTGACTATAAATGGACTTTTCTT-TCAATGAAT-GCTTTTTCTTCACGTTTCTTG
* * * *
12863 AGGTAAACATTTAATTATAGTCTAG-TTGAACCAAGAATGTAAAAAAATTCAACTTAAAATCAAT
64 AGGTAGACATTCAATTATAGTCT-GTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAAT
* **********
12927 TATGAGAATATAAAACCATTTAANNNNNNNNNNAAGGCTTTT
128 TATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
* * * * * * *
12969 GAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAATAAATCCCTTTCTCTTCATGTTTCTTG
1 GAAGGAATGAGTGACTATAAATGGACTTTTCTT-TCAATGAAT-GCTTTTTCTTCACGTTTCTTG
*
13034 AGGTAGACATTCAATTATAGTTTAG-TTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAAT
64 AGGTAGACATTCAATTATAGTCT-GTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAAT
13098 TATGAGATTATA
128 TATGAGATTATA
13110 NNNNNNNNNN
Statistics
Matches: 1290, Mismatches: 346, Indels: 78
0.75 0.20 0.05
Matches are distributed among these distances:
167 4 0.00
168 133 0.10
169 158 0.12
170 184 0.14
171 635 0.49
172 94 0.07
173 74 0.06
174 8 0.01
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.34
Consensus pattern (169 bp):
GAAGGAATGAGTGACTATAAATGGACTTTTCTTTCAATGAATGCTTTTTCTTCACGTTTCTTGAG
GTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTAT
GAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
Found at i:15269 original size:171 final size:169
Alignment explanation
Indices: 14910--15734 Score: 602
Period size: 171 Copynumber: 4.8 Consensus size: 169
14900 NNNNNNNNNN
* * *
14910 AATTCAACTT-AAATACAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAATGCTTTTGAA
1 AATTTAACTTAAAAT-CAATTATGAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAA
* ** * * * * *
14974 GGTGTGAGAGACTATAAACGGACTTTGCTT-CCAAATAAATGGCTTTCTCTACACGTTT-TCTAA
65 AGAATGAGAGACTATAAATGGACTTTTCTTACC-AATGAATGTCTTTTTCTACACGTTTCTC-AA
* * * *
15037 GGAAAG-CATTCAGTTACAGTCTGTTTTAA-TGAAAAGTGTAAAAA
128 -GATAGACATTCAATTATAATCTGTTTTAACT-AAAA-TGT-AAAA
* * *
15081 AATTTAACTTAAAATCAATGATGAGATTATAAAATCATTTAAAGTGAGTAACAGGGCTTTTGAAA
1 AATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAA
* * *
15146 GAAT-AGGTGACTAT-AATGGACTTTTCTTACCAATGAATGTCTTTTTCTCCATGTTTCTCAAGA
66 GAATGA-GAGACTATAAATGGACTTTTCTTACCAATGAATGTCTTTTTCTACACGTTTCTCAAGA
*
15209 TAGACATTCAATTATAATCTGTGTTAACTAATAATGTAAAA
130 TAGACATTCAATTATAATCTGTTTTAACTAA-AATGTAAAA
* * * *
15250 GAATTTGAACTTGAAATCAATTACGAGATTATAAAATCATTTAAAGCGAGTAACAAGGCTTTTGA
1 -AATTT-AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGA
* * ** **
15315 AGGAGT-AGGAGACTATAAATGGACTTTTCTTAGTAATGAATG-CTTTTTTCTACACGTTTCTTG
64 AAGAATGA-GAGACTATAAATGGACTTTTCTTACCAATGAATGTC-TTTTTCTACACGTTTCTCA
* * * * *
15378 AGGTAGATATTCAATTATAGTCTATTTTAACCAAAA-GCATAAAAA
127 AGATAGACATTCAATTATAATCTGTTTTAACTAAAATG--T-AAAA
* * * * * *
15423 AATTCAACTTAAAATCAATTATAAGATTGTAAAACCTTTTAAAGTGAGTAATAAAGCTTTT-AAA
1 AATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAA
* * * * * * * *
15487 GGAATGAGTGACTATAAGTGAACTTTTCTGATCAATGAATCAT-TTTTTGTACATGTTTAC-CAA
66 -GAATGAGAGACTATAAATGGACTTTTCTTACCAATGAAT-GTCTTTTTCTACACGTTT-CTCAA
* ** * * *******
15550 GGTAGGTATTCAATTATAATCTATTTTAACAAAAAANNNNNNNNN
128 GATAGACATTCAATTATAATCTGTTTTAAC-TAAAA--TGTAAAA
* * * * * * *
15595 NA-TCAACTTAAAATCAATTATGAGATAATGAAACCATTTAAAATGAGTAATAAGG-TTCTGAAA
1 AATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAA
* * * * ** ** * *
15658 GAATG-GATTACTATAAATAGACTTTTCTTGCCAATGATTACCTTTTTCTTGACTTTTCTCGAGA
66 GAATGAGA-GACTATAAATGGACTTTTCTTACCAATGAATGTCTTTTTCTACACGTTTCTCAAGA
*
15722 TAAACATTCAATT
130 TAGACATTCAATT
15735 TGAGATTATA
Statistics
Matches: 524, Mismatches: 103, Indels: 55
0.77 0.15 0.08
Matches are distributed among these distances:
169 11 0.02
170 121 0.23
171 306 0.58
172 82 0.16
173 4 0.01
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.35
Consensus pattern (169 bp):
AATTTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAA
GAATGAGAGACTATAAATGGACTTTTCTTACCAATGAATGTCTTTTTCTACACGTTTCTCAAGAT
AGACATTCAATTATAATCTGTTTTAACTAAAATGTAAAA
Found at i:15635 original size:342 final size:339
Alignment explanation
Indices: 14910--15686 Score: 780
Period size: 342 Copynumber: 2.3 Consensus size: 339
14900 NNNNNNNNNN
*
14910 AATTCAACTTAAATACAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAATGCTTTTGAAG
1 AATTCAACTTAAAT-CAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAG
* * * *
14975 GTGTGAGAGACTATAAACGGACTTTGCTTCCAAATAAATGGCTTTCTCTACACGTTTTCTAAGGA
65 GAGTG-GAGACTATAAATGGACTTTTCTTACAAATAAATGGCTTTCTCTACACGTTTTCTAAGGA
* * ** ** * *
15040 AAGCATTCAGTTACAGTCTGTTTTAATGAAAAGTGTAAAAAAATTTAACTTAAAATCAATGATGA
129 AAGCATTCAATTACAGTCTATTTTAACCAAAAGCATAAAAAAATTCAACTTAAAATCAATGATAA
* ** *
15105 GATTATAAAATCATTTAAAGTGAGTAACAGGGCTTTTGAAAGAATAGGTGACTATAATGGACTTT
194 GATTATAAAACCATTTAAAGTGAGTAACAAAGCTTTTGAAAGAATAGGTGACTATAATGAACTTT
* * * *
15170 TCTTACCAATGAATGTCTTTTTCTCCATGTTTCTCAAGATAGACATTCAATTATAATCTGTGTTA
259 TCTGACCAATGAATATCTTTTTCTACATGTTTCTCAAGATAGACATTCAATTATAATCTATGTTA
* *
15235 ACTAATAATGTAAAAG
324 ACAAAAAATGTAAAAG
* * * * *
15251 AATTTGAACTTGAAATCAATTACGAGATTATAAAATCATTTAAAGCGAGTAACAAGGCTTTTGAA
1 AA-TTCAACTT-AAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAA
** * * *
15316 GGAGTAGGAGACTATAAATGGACTTTTCTTAGTAATGAAT-GCTTTTTTCTACACG-TTTCTTGA
64 GGAGT-GGAGACTATAAATGGACTTTTCTTACAAATAAATGGC-TTTCTCTACACGTTTTC-TAA
* * * *
15379 GG-TAGATATTCAATTATAGTCTATTTTAACCAAAAGCATAAAAAAATTCAACTTAAAATCAATT
126 GGAAAG-CATTCAATTACAGTCTATTTTAACCAAAAGCATAAAAAAATTCAACTTAAAATCAATG
* * *
15443 ATAAGATTGTAAAACCTTTTAAAGTGAGTAATAAAGCTTTT-AAAGGAAT-GAGTGACTATAAGT
190 ATAAGATTATAAAACCATTTAAAGTGAGTAACAAAGCTTTTGAAA-GAATAG-GTGACTATAA-T
* * * **
15506 GAACTTTTCTGATCAATGAATCAT-TTTTTGTACATGTTTAC-CAAGGTAGGTATTCAATTATAA
252 GAACTTTTCTGACCAATGAAT-ATCTTTTTCTACATGTTT-CTCAAGATAGACATTCAATTATAA
* ********
15569 TCTATTTTAACAAAAAANNNNNNNNN
315 TCTATGTTAACAAAAAA-TGTAAAAG
* * * * * *
15595 NA-TCAACTTAAAATCAATTATGAGATAATGAAACCATTTAAAATGAGTAATAAGG-TTCTGAAA
1 AATTCAACTT-AAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAG
* * *
15658 GAATGGATTACTATAAATAGACTTTTCTT
65 GAGTGGA-GACTATAAATGGACTTTTCTT
15687 GCCAATGATT
Statistics
Matches: 354, Mismatches: 69, Indels: 26
0.79 0.15 0.06
Matches are distributed among these distances:
340 3 0.01
341 42 0.12
342 237 0.67
343 69 0.19
344 3 0.01
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.34
Consensus pattern (339 bp):
AATTCAACTTAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGG
AGTGGAGACTATAAATGGACTTTTCTTACAAATAAATGGCTTTCTCTACACGTTTTCTAAGGAAA
GCATTCAATTACAGTCTATTTTAACCAAAAGCATAAAAAAATTCAACTTAAAATCAATGATAAGA
TTATAAAACCATTTAAAGTGAGTAACAAAGCTTTTGAAAGAATAGGTGACTATAATGAACTTTTC
TGACCAATGAATATCTTTTTCTACATGTTTCTCAAGATAGACATTCAATTATAATCTATGTTAAC
AAAAAATGTAAAAG
Found at i:15946 original size:21 final size:21
Alignment explanation
Indices: 15922--15973 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
15912 ATTATAAATC
15922 CATTTGAAGCGAGTAATAAGG
1 CATTTGAAGCGAGTAATAAGG
15943 CATTTGAAGCGAGTAATAAGG
1 CATTTGAAGCGAGTAATAAGG
*
15964 CTTTTGAAGC
1 CATTTGAAGC
15974 AATAGGAGAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.27
Consensus pattern (21 bp):
CATTTGAAGCGAGTAATAAGG
Found at i:21352 original size:171 final size:171
Alignment explanation
Indices: 20990--22237 Score: 1133
Period size: 171 Copynumber: 7.3 Consensus size: 171
20980 NNNNNNNNNN
* * * ** * * *
20990 TTGATTTTAAGTTCAATTTTTTTACATTTTTGGTTAAAATAGAGAATAATTGAATCTTTGCCTCT
1 TTGATTTTAAGTTGAATTTTTTTACATTTTTCGTTAAAACAGACTATAATTGAATGTCTACCT-T
* * * *
21055 -AGAAATGTGAAGAAAAAAGCATTCATCT-GCAAGAAAGGTCCATTTTTAGTC-T-CATTCCTTC
65 GAGAAACGTGAAGAAAAAAACATTCAT-TGGCAAGAAAAGTCCATTTATAGTCATCCATTCCTTC
* * ** *
21116 AAAAACCTTATTACTC-GTTGTAAATAATTTTATAATCTCAAAA
129 AAAAGCCTTATTACTCACTT-TAAATGGTTTTATAATCTCATAA
* * * * *
21159 TTGATTTTAAGTTCAATTTTTTTTC-TTCTTTCGTTAAAACAGATTATAATTGAATGTTTACTTT
1 TTGATTTTAAGTTGAATTTTTTTACATT-TTTCGTTAAAACAGACTATAATTGAATGTCTACCTT
* *
21223 GAGAAACGTGAAGAAAAAAATATTCATTGGCAAGAAAAGTCCATTTATTGTCATCCATTCCTTCA
65 GAGAAACGTGAAGAAAAAAACATTCATTGGCAAGAAAAGTCCATTTATAGTCATCCATTCCTTCA
*
21288 AAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCAAAA
130 AAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAA
* * * * * * **
21330 TTGATTTTAAGTTTACTTTTTTTA-ATTTTTTTGTTCAAACAGATTATAATTAAATGTCTACGAT
1 TTGATTTTAAGTTGAATTTTTTTACA-TTTTTCGTTAAAACAGACTATAATTGAATGTCTACCTT
* * * * * * *
21394 GAGAAACTTGCAG-AAAACATATTTATTTTG-AAAAAAAGTCCATTTATAGTC-TCCCATTCCTT
65 GAGAAACGTGAAGAAAAAAACATTCA-TTGGCAAGAAAAGTCCATTTATAGTCAT-CCATTCCTT
* *
21456 CGAAAGCCTTATTACT-AGCCTTAAATGGTTTTATAATCTCATAA
128 CAAAAGCCTTATTACTCA-CTTTAAATGGTTTTATAATCTCATAA
* * **
21500 TTG-TATTTAAGTTGAATTCTTTTATA-ATTTTT-ATTAAAACAAACTATAATTGAATACCTACC
1 TTGAT-TTTAAGTTGAATT-TTTT-TACATTTTTCGTTAAAACAGACTATAATTGAATGTCTACC
* * * * ** * * * *
21562 TCGATAAACGAGTAGAAAAAGCCATTCGTTAGCAAGAAAAGTCTATTTATAATCCAT-CATTCCT
63 TTGAGAAACGTGAAGAAAAAAACATTCATTGGCAAGAAAAGTCCATTTATAGT-CATCCATTCCT
* * * *
21626 TCAAAAACCTTGTTACTCAGTTTAAATGGTTTTAAAATCTCATAA
127 TCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAA
* * * * * *
21671 TTGATTTTAAGATGAA-TTGTTTACATTTTTCATTAAAATAGACTATAATTAAATATCTACCTTG
1 TTGATTTTAAGTTGAATTTTTTTACATTTTTCGTTAAAACAGACTATAATTGAATGTCTACCTTG
* * * * * * *
21735 -GAAAACGTGCA-AAAAACACATTTATTTAG-AACAAAAGTCTATTTATAGT-TTCCTATTCCTT
66 AG-AAACGTGAAGAAAAAAACATTCA-TTGGCAAGAAAAGTCCATTTATAGTCATCC-ATTCCTT
* *
21796 CAAAAGCCTTATTACTCATTTTAAATGGTTTTATAATCTCAAAA
128 CAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAA
* * * *
21840 TTGATTTTAAGTTTAATTTTTTTTACATTTTTAGTTAAAACAGATTATAATTGAATGTTTACCTT
1 TTGATTTTAAGTTGAA-TTTTTTTACATTTTTCGTTAAAACAGACTATAATTGAATGTCTACCTT
** * * * * * * * *
21905 GAGAAAAATGAAAAAAAAAAGGAAATCATTGGCAAGAAAAGTTCATTTGTAGTAACCCATTCTTT
65 GAGAAACGTGAAGAAAAAAA--CATTCATTGGCAAGAAAAGTCCATTTATAGTCATCCATTCCTT
* * *
21970 CAAAA-CCTTATCACTCACTTTAAATGATTTTATAATCTGATAA
128 CAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAA
* * * *
22013 TTGATTTTAAGTTG-ATTTTTTTACATTTTTCTTTAAAATAGACTATAATTGAGTGCCTACCTTG
1 TTGATTTTAAGTTGAATTTTTTTACATTTTTCGTTAAAACAGACTATAATTGAATGTCTACCTTG
* * * * ** * *
22077 TGAAACATGTAGAAAAAGACATTCATTGATAAGAAAAGTCCATTTATAGTCAGCCATTCCTTGAA
66 AGAAACGTGAAGAAAAAAACATTCATTGGCAAGAAAAGTCCATTTATAGTCATCCATTCCTTCAA
* * * *
22142 GAGCC-TATTAGT-AGCCTTAAATGGTTTTGTAATCTCATAA
131 AAGCCTTATTACTCA-CTTTAAATGGTTTTATAATCTCATAA
* * * *
22182 TTG-TATATAAGTTGATTTTTTTTACATTTTCCATTAAAACAGACTATAATTGAATG
1 TTGAT-TTTAAGTTGAATTTTTTTACATTTTTCGTTAAAACAGACTATAATTGAATG
22238 CTTGTCTTGG
Statistics
Matches: 885, Mismatches: 156, Indels: 75
0.79 0.14 0.07
Matches are distributed among these distances:
167 1 0.00
168 9 0.01
169 269 0.30
170 204 0.23
171 302 0.34
172 18 0.02
173 50 0.06
174 30 0.03
175 2 0.00
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (171 bp):
TTGATTTTAAGTTGAATTTTTTTACATTTTTCGTTAAAACAGACTATAATTGAATGTCTACCTTG
AGAAACGTGAAGAAAAAAACATTCATTGGCAAGAAAAGTCCATTTATAGTCATCCATTCCTTCAA
AAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAA
Found at i:21880 original size:341 final size:339
Alignment explanation
Indices: 21092--22237 Score: 1128
Period size: 341 Copynumber: 3.4 Consensus size: 339
21082 TGCAAGAAAG
* * * * * **
21092 GTCCATTTTTAGTCT-CATTCCTTCAAAAACCTTATTACTCG-TTGTAAATAATTTTATAATCTC
1 GTCCATTTATAGTATCCATTCCTTCAAAAGCCTTATTACTAGCCT-TAAATGGTTTTATAATCTC
* * *
21155 AAAATTG-ATTTTAAGTTCAATTTTTTTT-C-TTCTTTCGTTAAAACAGATTATAATTGAATGTT
65 AAAATTGTA-TTTAAGTTTAATTTTTTTTACATT-TTT-ATTAAAACAGACTATAATTGAATGTT
* * * * * **
21217 TACTTTGAGAAACGTGAAGAAAAA-AATATTCATTGGCAAGAAAAGTCCATTTATTGT-CATCCA
127 TACCTAGAAAAACGAGAAGAAAAAGAA-ATTCATTGGCAAGAAAAGTCTATTTATAATCCAT-CA
* * *
21280 TTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCAAAATTGATTTTAAGTTTA
190 TTCCTTCAAAAACCTTATTACTCACTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGA
** * * * ** * *
21345 CTTTTTTTA-ATTTTTTTGTTCAAACAGATTATAATTAAATGTCTACGAT-GAGAAACTTGCAGA
255 -TTTTTTTACA-TTTTTCATTAAAATAGACTATAATTAAATGTCTACCTTGGA-AAACATGCAAA
* *
21408 AAACATATTTATTTTGAAAAAAA
317 AAACACATTTATTTAGAAAAAAA
* *
21431 GTCCATTTATAGTCTCCCATTCCTTCGAAAGCCTTATTACTAGCCTTAAATGGTTTTATAATCTC
1 GTCCATTTATAGTAT-CCATTCCTTCAAAAGCCTTATTACTAGCCTTAAATGGTTTTATAATCTC
* * * * ***
21496 ATAATTGTATTTAAGTTGAATTCTTTTATA-ATTTTTATTAAAACAAACTATAATTGAATACCTA
65 AAAATTGTATTTAAGTTTAATT-TTTTTTACATTTTTATTAAAACAGACTATAATTGAATGTTTA
* * * ** * *
21560 CCTCGATAAACGAGTAGAAAAAGCCATTCGTTAGCAAGAAAAGTCTATTTATAATCCATCATTCC
129 CCTAGAAAAACGAGAAGAAAAAGAAATTCATTGGCAAGAAAAGTCTATTTATAATCCATCATTCC
* * * * * *
21625 TTCAAAAACCTTGTTACTCAGTTTAAATGGTTTTAAAATCTCATAATTGATTTTAAGATGAATTG
194 TTCAAAAACCTTATTACTCACTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGATTTT
* *
21690 TTTACATTTTTCATTAAAATAGACTATAATTAAATATCTACCTTGGAAAACGTGCAAAAAACACA
259 TTTACATTTTTCATTAAAATAGACTATAATTAAATGTCTACCTTGGAAAACATGCAAAAAACACA
*
21755 TTTATTTAGAACAAAA
324 TTTATTTAGAAAAAAA
* * **
21771 GTCTATTTATAGTTTCCTATTCCTTCAAAAGCCTTATTACTCA-TTTTAAATGGTTTTATAATCT
1 GTCCATTTATAGTATCC-ATTCCTTCAAAAGCCTTATTACT-AGCCTTAAATGGTTTTATAATCT
*
21835 CAAAATTG-ATTTTAAGTTTAATTTTTTTTACATTTTTAGTTAAAACAGATTATAATTGAATGTT
64 CAAAATTGTA-TTTAAGTTTAATTTTTTTTACATTTTTA-TTAAAACAGACTATAATTGAATGTT
* * *
21899 TACCTTGAGAAAAATGAAAAAAAAAAGGAAA-TCATTGGCAAGAAAAGT-TCATTTGTAGTAA-C
127 TACC-T-AGAAAAACGAGAAGAAAAA-GAAATTCATTGGCAAGAAAAGTCT-A-TT-TA-TAATC
* * * *
21961 C--CATTCTTTC-AAAACCTTATCACTCACTTTAAATGATTTTATAATCTGATAATTGATTTTAA
185 CATCATTCCTTCAAAAACCTTATTACTCACTTTAAATGGTTTTATAATCTCATAATTGATTTTAA
* * * * *
22023 GTTGATTTTTTTACATTTTTCTTTAAAATAGACTATAATTGAGTGCCTACCTTGTG-AAACATGT
250 GTTGATTTTTTTACATTTTTCATTAAAATAGACTATAATTAAATGTCTACCTTG-GAAAACATGC
* * * * *
22087 AGAAAAAGACATTCATTGATAAGAAAA
314 A-AAAAACACATTTATTTAGAAAAAAA
* * * * *
22114 GTCCATTTATAGTCAGCCATTCCTTGAAGAGCC-TATTAGTAGCCTTAAATGGTTTTGTAATCTC
1 GTCCATTTATAGT-ATCCATTCCTTCAAAAGCCTTATTACTAGCCTTAAATGGTTTTATAATCTC
* * * *
22178 ATAATTGTATATAAG-TTGATTTTTTTTACATTTTCCATTAAAACAGACTATAATTGAATG
65 AAAATTGTATTTAAGTTTAATTTTTTTTACATTTT-TATTAAAACAGACTATAATTGAATG
22238 CTTGTCTTGG
Statistics
Matches: 669, Mismatches: 109, Indels: 56
0.80 0.13 0.07
Matches are distributed among these distances:
339 23 0.03
340 145 0.22
341 251 0.38
342 151 0.23
343 86 0.13
344 6 0.01
345 4 0.01
346 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.40
Consensus pattern (339 bp):
GTCCATTTATAGTATCCATTCCTTCAAAAGCCTTATTACTAGCCTTAAATGGTTTTATAATCTCA
AAATTGTATTTAAGTTTAATTTTTTTTACATTTTTATTAAAACAGACTATAATTGAATGTTTACC
TAGAAAAACGAGAAGAAAAAGAAATTCATTGGCAAGAAAAGTCTATTTATAATCCATCATTCCTT
CAAAAACCTTATTACTCACTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGATTTTTT
TACATTTTTCATTAAAATAGACTATAATTAAATGTCTACCTTGGAAAACATGCAAAAAACACATT
TATTTAGAAAAAAA
Found at i:22894 original size:173 final size:170
Alignment explanation
Indices: 22519--23033 Score: 585
Period size: 173 Copynumber: 3.0 Consensus size: 170
22509 NNNNATTCAG
* * * *
22519 AAGAAAAGTCCATTTATAGTCTCCTATTCCTTCAAAAACCTTATTACTCACTTTT-AATGATTTT
1 AAGAAAAGTCCATTTATAGTATCCCATTCCTTC-AAAACCTTATTACTC-GTTTTAAATGGTTTT
* * * * * * *
22583 TTAATCTCATAATTGATTTTAAGCTAAATTGTTTTTTTACATTTTTTCTTAAAAAAGACCATCAT
64 ATAATCTCATAATTGATTTTAAG-TTAATT-TCTTTTTACA-TTTTTATTAAAACAGACTATAAT
*
22648 TGAATGTCTACCTGGAGAAACATGAAGAAAAAGGCATTCGTTGGC
126 TGAATGTCTACCTGGAGAAACATGAAGAAAAAGGCATTCATTGGC
*
22693 AAGAAAAGTCCATTTATAGTCA-CCCATTCCTTCAAAAGCCTTATTGCTCGTTTTAAATGGTTTT
1 AAGAAAAGTCCATTTATAGT-ATCCCATTCCTTCAAAA-CCTTATTACTCGTTTTAAATGGTTTT
* * *
22757 ATAATCTCATAAATGATTTTAAGTTCAATTTCTTTTTATATTTTTAGTTAAAACAGATTATAATT
64 ATAATCTCATAATTGATTTTAAGTT-AATTTCTTTTTACATTTTTA-TTAAAACAGACTATAATT
** * * *
22822 TTATGTTTACTTTGAGAAA-ACTGAAGAAAAAGGCATTCATTGGC
127 GAATGTCTACCTGGAGAAACA-TGAAGAAAAAGGCATTCATTGGC
* * * *
22866 AAGAAAAGTCCATTTATAGTATCCCATT-CTATTAAAACCTTATTTCTCGCTTTAAATAGTTTTA
1 AAGAAAAGTCCATTTATAGTATCCCATTCCT-TCAAAACCTTATTACTCGTTTTAAATGGTTTTA
*
22930 TAATCTCATAATTGATTTTAAGTTAATTGC-TTTTACATTTTTCATTAAAACAGACTATAATTGA
65 TAATCTCATAATTGATTTTAAGTTAATTTCTTTTTACATTTTT-ATTAAAACAGACTATAATTGA
* * * *
22994 ATGCCTACTTTGGA-AAACATG-TGCAAAAAGCCATTCATTG
129 ATGTCTAC-CTGGAGAAACATGAAG-AAAAAGGCATTCATTG
23034 ATAAGAANNN
Statistics
Matches: 293, Mismatches: 36, Indels: 28
0.82 0.10 0.08
Matches are distributed among these distances:
169 1 0.00
170 54 0.18
171 11 0.04
172 56 0.19
173 98 0.33
174 73 0.25
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.39
Consensus pattern (170 bp):
AAGAAAAGTCCATTTATAGTATCCCATTCCTTCAAAACCTTATTACTCGTTTTAAATGGTTTTAT
AATCTCATAATTGATTTTAAGTTAATTTCTTTTTACATTTTTATTAAAACAGACTATAATTGAAT
GTCTACCTGGAGAAACATGAAGAAAAAGGCATTCATTGGC
Done.