Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398751.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2034.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4467
ACGTcount: A:0.17, C:0.06, G:0.05, T:0.16

Warning! 2474 characters in sequence are not A, C, G, or T


Found at i:1466 original size:170 final size:170

Alignment explanation


    Indices: 1175--1543  Score: 429
    Period size: 170  Copynumber: 2.2  Consensus size: 170

       1165 NNNNNNNNNN

                      *      * *            *           *      *             
       1175 TATATTTTCTATTAAAACAAATTATAATTGAATATCTGACTCAAGAAACGTGAACAAAAAGATAT
          1 TATATTTT-TTTTAAAATAGATTATAATTGAACATCTGACTCAAAAAACGTAAACAAAAAGATAT

                 *           **                **         *            *     
       1240 CCATTGGCAAGAAAAGTTTATATATAGTCACCCATGTCTTCGAAAGGCTTATTACTCGCTTTAAA
         65 CCATTAGCAAGAAAAGTCCATATATAGTCACCCATACCTTCGAAAGCCTTATTACTCGCCTTAAA

            *                                          
       1305 TGCTTTTT-TAACCTCATAATT-AGTTTAAAGTTGAAATTTTT
        130 CG-TTTTTATAACCTCATAATTGA-TTTAAAGTTGAAATTTTT

                                *            *    *         *     *    *     
       1346 TAT-TTTTTTATTAAAATAGTTTATAATTGAACGTCTGCCTCAAAAAATGTAAAGAAAATGATAT
          1 TATATTTTTT-TTAAAATAGATTATAATTGAACATCTGACTCAAAAAACGTAAACAAAAAGATAT

                        *        *                    *                      
       1410 CCATTAGCAAGAGAAGTCCATTTATAGTCACCCATACCTTCGGAAGCCTTATTACTCGCCTTAAA
         65 CCATTAGCAAGAAAAGTCCATATATAGTCACCCATACCTTCGAAAGCCTTATTACTCGCCTTAAA

                       *  *           *        *     
       1475 CGTTTTTATAATCTTATAATTGATTTTAAGTTGAATTTTTT
        130 CGTTTTTATAACCTCATAATTGATTTAAAGTTGAAATTTTT

                                        
       1516 TATAATTTTTTTTAAAATAGATTATAAT
          1 TAT-ATTTTTTTTAAAATAGATTATAAT

       1544 NNNNNNNNNN


Statistics
Matches: 165,  Mismatches: 28, Indels: 10
        0.81            0.14        0.05

Matches are distributed among these distances:
 169    6  0.04
 170  133  0.81
 171   20  0.12
 172    6  0.04

ACGTcount: A:0.36, C:0.13, G:0.11, T:0.39


Consensus pattern (170 bp):   
TATATTTTTTTTAAAATAGATTATAATTGAACATCTGACTCAAAAAACGTAAACAAAAAGATATC
CATTAGCAAGAAAAGTCCATATATAGTCACCCATACCTTCGAAAGCCTTATTACTCGCCTTAAAC
GTTTTTATAACCTCATAATTGATTTAAAGTTGAAATTTTT
Done.