Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397268.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_81.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6219335

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1452 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6153752--6153798
7
6.9
7
85
4
51
80
0
0
19
0.70
6154372--6154461
39
2.2
40
82
9
112
43
10
42
4
1.58
6158999--6159038
20
2.0
20
85
0
53
35
32
2
30
1.71
6163904--6163966
21
2.9
22
78
4
74
28
25
14
31
1.95
6163966--6164014
24
2.0
24
92
0
80
38
6
10
44
1.63
6163843--6164137
147
2.0
147
86
2
414
32
17
14
35
1.90
6169331--6169369
19
2.1
19
90
0
60
56
0
5
38
1.22
6180595--6180669
8
9.2
8
76
12
64
64
0
34
1
1.02
6188724--6188753
15
2.0
15
93
0
51
0
23
6
70
1.11
6198503--6198639
72
1.9
72
83
3
177
24
22
17
35
1.95
6202321--6202353
15
2.1
16
94
5
59
21
18
15
45
1.85
6204879--6205077
73
2.7
73
74
5
195
25
19
17
38
1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!