genome.fa.s150.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397403.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_833.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23435

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9--1284	171	7.5	169	75	4	900	36	12	14	34	1.83
1460--1866	170	2.4	171	78	6	412	41	10	11	36	1.75
1444--3098	171	9.7	170	73	7	895	38	10	12	35	1.78
1957--2893	343	2.7	340	75	8	853	39	11	11	36	1.77
3350--4245	171	5.2	168	77	5	696	37	12	13	35	1.82
3704--4206	170	3.0	161	75	10	357	36	11	13	36	1.81
3473--4240	341	2.2	341	75	3	751	37	10	13	36	1.80
4756--5129	169	2.2	171	83	7	460	39	11	13	35	1.81
4756--5202	169	2.6	169	80	7	410	38	11	13	34	1.81
5666--6167	173	2.9	169	79	6	535	39	10	12	37	1.78
5666--6271	171	3.5	169	77	5	572	40	10	12	35	1.77
7250--7930	172	4.0	172	72	3	548	34	12	11	37	1.80
8296--8802	171	3.0	171	79	2	437	35	13	14	35	1.84
9035--9805	172	4.5	172	78	2	715	35	12	13	36	1.82
10407--10962	171	3.2	171	78	3	584	37	11	14	33	1.83
11236--11549	171	1.9	161	87	1	378	35	14	10	36	1.80
12394--13625	171	7.3	169	73	6	714	36	12	13	33	1.81
14200--14613	168	2.4	167	76	7	388	39	12	11	34	1.79
15322--15360	20	2.0	20	85	10	53	25	17	10	46	1.80
15258--16005	171	4.4	171	78	3	655	37	10	13	36	1.79
16697--17026	170	1.9	170	79	3	358	37	10	13	35	1.79
18874--19262	172	2.3	171	79	6	421	40	9	14	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19707--20205	171	2.9	171	79	7	492	38	12	13	34	1.83
20880--21227	171	2.0	170	83	4	434	39	14	13	32	1.84

Tables:   1

The End!