Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398754.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2037.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2630
ACGTcount: A:0.24, C:0.07, G:0.08, T:0.21

Warning! 1041 characters in sequence are not A, C, G, or T


Found at i:1014 original size:172 final size:160

Alignment explanation


    Indices: 831--1162  Score: 335
    Period size: 172  Copynumber: 2.0  Consensus size: 160

        821 NNNNNNNNNN

                                   *                    *      *             
        831 AATTATGAGATTATAAAACCATTTAAACCAAGTAATAAGGCTTTTAAAGGATTGAGTGACTATAA
          1 AATTATGAGATTATAAAACCATTAAAACCAAGTAATAAGGCTTTCAAAGGAATGAGTGACTATAA

              ** *        *                    *                 *  *        
        896 ATGGACTTTTCTTCTCAATGAATAGGCTTTTTTTGTAAGTTTTCCA-AGGCAGGTATTCAATTAT
         66 ATAAAATTTTCTTCACAATGAATA-GCTTTTTTTGCAAG-TTT-CAGAGGCAGATAATCAATTAT

                                                        
        960 AGTCT-ATTTTAACAAAAAATATAAAAATATTNNNNNNNNNNTC
        128 AGTCTGA-TTTAACAAAAAATATAAAAATATT----------TC

                *                      * **        *     *                   
       1003 AATTGTGAGATTATAAAACCATTAAAAGCGGGTAATAAGTCTTTCGAAGGAATGAGTGACTATAA
          1 AATTATGAGATTATAAAACCATTAAAACCAAGTAATAAGGCTTTCAAAGGAATGAGTGACTATAA

                                                *           *                
       1068 ATAAAATTTTCTTCACAATGAATAGCTTTTTTTGCATGTTTCATGAGGTAGATAATCAATTATAG
         66 ATAAAATTTTCTTCACAATGAATAGCTTTTTTTGCAAGTTTCA-GAGGCAGATAATCAATTATAG

                              *      *    
       1133 TCTGATTTAACAAAAAATGTAAAAACATTT
        130 TCTGATTTAACAAAAAATATAAAAATATTT

       1163 AACTTAAAAT


Statistics
Matches: 137,  Mismatches: 20, Indels: 17
        0.79            0.11        0.10

Matches are distributed among these distances:
 161    1  0.01
 169    2  0.01
 170    3  0.02
 171   54  0.39
 172   77  0.56

ACGTcount: A:0.38, C:0.10, G:0.14, T:0.35


Consensus pattern (160 bp):   
AATTATGAGATTATAAAACCATTAAAACCAAGTAATAAGGCTTTCAAAGGAATGAGTGACTATAA
ATAAAATTTTCTTCACAATGAATAGCTTTTTTTGCAAGTTTCAGAGGCAGATAATCAATTATAGT
CTGATTTAACAAAAAATATAAAAATATTTC
Done.