Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398755.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2038.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 637

Length: 1063
ACGTcount: A:0.31, C:0.08, G:0.11, T:0.28

Warning! 231 characters in sequence are not A, C, G, or T


Found at i:454 original size:167 final size:168

Alignment explanation


    Indices: 147--467  Score: 412
    Period size: 167  Copynumber: 1.9  Consensus size: 168

        137 TCTTTATGTT

                    *                 * *  *   *                     **      
        147 TCTCAAAGTAGACATTCAATTATAATCTGTTTTAGTCAAAAATGTAAAAAAATTCAATTTAAAAT
          1 TCTCAAAGGAGACATTCAATTATAATATATTCTAGACAAAAATGTAAAAAAATTCAACCTAAAAT

                 * *                *   * *               *  *          * *  
        212 CAATTTTGAGATTATAAAACTATTTAAAGTTAGTAATAAGACTTTTGAAGGAATGGGTGATTGTA
         66 CAATTATAAGATTATAAAACTATTCAAAATGAGTAATAAGACTTTTAAAAGAATGGGTGAATATA

               *                                   
        277 AATGGACTTTTCTT-GCTAATGAATATTTTTTTCACGTC
        131 AATAGACTTTTCTTGGC-AATGAATATTTTTTTCACGTC

                  *              *                                        *  
        315 TCTCAAGGGAGACATTCAATTGTAATATATTCTA-ACAAAAATGTAAAAAAATTCAACCTAACAT
          1 TCTCAAAGGAGACATTCAATTATAATATATTCTAGACAAAAATGTAAAAAAATTCAACCTAAAAT

                                                    *                       *
        379 CAATTATAAGATTATAAAACTATTCAAAATGAGTAATAAGGCTTTTAAAAGAATGGGTGAATATT
         66 CAATTATAAGATTATAAAACTATTCAAAATGAGTAATAAGACTTTTAAAAGAATGGGTGAATATA

                       *            
        444 AATAGACTTTTTTTGGCAATGAAT
        131 AATAGACTTTTCTTGGCAATGAAT

        468 GCCTTTTTCN


Statistics
Matches: 129,  Mismatches: 23, Indels: 3
        0.83            0.15        0.02

Matches are distributed among these distances:
 167   99  0.77
 168   30  0.23

ACGTcount: A:0.41, C:0.10, G:0.13, T:0.36


Consensus pattern (168 bp):   
TCTCAAAGGAGACATTCAATTATAATATATTCTAGACAAAAATGTAAAAAAATTCAACCTAAAAT
CAATTATAAGATTATAAAACTATTCAAAATGAGTAATAAGACTTTTAAAAGAATGGGTGAATATA
AATAGACTTTTCTTGGCAATGAATATTTTTTTCACGTC
Done.