genome.fa.s1508.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398761.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2044.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19955

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--3944	171	23.1	170	77	5	2920	38	13	13	34	1.83
1--3944	341	11.6	338	75	6	2778	38	13	13	34	1.83
4542--4902	170	2.1	170	82	4	417	42	11	11	34	1.77
7317--7978	171	3.9	168	75	6	577	38	13	12	33	1.82
7317--7973	338	2.0	329	83	3	759	38	13	12	34	1.82
8469--9751	170	7.5	168	74	7	936	38	12	13	35	1.82
8469--9751	341	3.8	335	75	7	969	38	12	13	35	1.82
9524--10031	279	1.8	279	81	5	632	34	13	14	37	1.85
9787--10787	170	5.9	170	77	7	897	36	13	12	35	1.83
9804--10787	510	1.9	511	81	5	1168	36	13	12	36	1.83
10955--13019	170	12.2	170	78	6	1602	39	12	12	35	1.82
11972--12398	158	2.6	159	79	7	376	38	12	14	34	1.84
12130--13019	172	5.2	171	80	4	846	40	11	11	36	1.78
12130--12885	343	2.2	343	82	3	891	40	11	11	36	1.77
13427--13835	170	2.4	170	81	4	482	42	12	11	33	1.80
13334--13835	175	2.9	168	77	6	504	40	13	11	34	1.81
14317--14993	341	2.0	340	82	5	821	38	12	11	35	1.80
14317--14991	170	4.0	169	78	6	605	38	12	11	35	1.80
15226--16105	171	5.2	170	73	3	532	36	11	11	34	1.77
16742--18367	170	9.5	171	78	4	1370	38	12	13	34	1.83
16742--18369	342	4.8	338	80	5	1528	38	12	13	34	1.83
17216--18337	172	6.6	170	77	8	426	39	12	13	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18936--19954	171	6.0	171	77	8	885	39	13	12	34	1.83
18952--19954	340	2.9	338	78	6	970	39	13	12	34	1.83

Tables:   1

The End!