Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397406.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_772.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 23297
ACGTcount: A:0.20, C:0.06, G:0.06, T:0.19

Warning! 11128 characters in sequence are not A, C, G, or T


Found at i:15476 original size:76 final size:76

Alignment explanation


    Indices: 15350--15498  Score: 271
    Period size: 76  Copynumber: 2.0  Consensus size: 76

      15340 TTTGACTTAA

                                                *                            
      15350 TTGACTTATTATGTTAAATCTCACACATTTAAGTCAGTATTTTAACAATCTGTGTTCCTTCTTTA
          1 TTGACTTATTATGTTAAATCTCACACATTTAAGTCAATATTTTAACAATCTGTGTTCCTTCTTTA

                       
      15415 TAATTTTTTTG
         66 TAATTTTTTTG

                                                       *       *             
      15426 TTGACTTATTATGTTAAATCTCACACATTTAAGTCAATATTTTGACAATCTTTGTTCCTTCTTTA
          1 TTGACTTATTATGTTAAATCTCACACATTTAAGTCAATATTTTAACAATCTGTGTTCCTTCTTTA

                    
      15491 TAATTTTT
         66 TAATTTTT

      15499 ATATTAACTC


Statistics
Matches: 70,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  76   70  1.00

ACGTcount: A:0.27, C:0.15, G:0.08, T:0.50


Consensus pattern (76 bp):   
TTGACTTATTATGTTAAATCTCACACATTTAAGTCAATATTTTAACAATCTGTGTTCCTTCTTTA
TAATTTTTTTG

Found at i:16672 original size:76 final size:76

Alignment explanation


    Indices: 16576--16729  Score: 254
    Period size: 76  Copynumber: 2.0  Consensus size: 76

      16566 TGCAAGAGTT

                     *  *        *                                   *       
      16576 AACATAAAACTTGTAAAGAAGGAACACAGATTGTCAAAATATTGACTTAAATGTGTGGGATTTAA
          1 AACATAAAAATTATAAAGAAGCAACACAGATTGTCAAAATATTGACTTAAATGTGTGAGATTTAA

                 *     
      16641 CATAATAAGTC
         66 CATAAAAAGTC

                                  *                                          
      16652 AACATAAAAATTATAAAGAAGCCACACAGATTGTCAAAATATTGACTTAAATGTGTGAGATTTAA
          1 AACATAAAAATTATAAAGAAGCAACACAGATTGTCAAAATATTGACTTAAATGTGTGAGATTTAA

                       
      16717 CATAAAAAGTC
         66 CATAAAAAGTC

              
      16728 AA
          1 AA

      16730 TTAAGTCAAA


Statistics
Matches: 72,  Mismatches: 6, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  76   72  1.00

ACGTcount: A:0.47, C:0.11, G:0.15, T:0.27


Consensus pattern (76 bp):   
AACATAAAAATTATAAAGAAGCAACACAGATTGTCAAAATATTGACTTAAATGTGTGAGATTTAA
CATAAAAAGTC
Done.