Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397407.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_858.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23190

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1670
171
9.8
172
77
8
1354
38
13
13
33
1.83
1--1629
170
9.5
169
76
10
881
38
13
13
33
1.83
1393--1952
281
2.0
280
90
1
881
39
13
14
33
1.85
1668--2095
172
2.5
171
79
7
474
39
12
14
33
1.83
1668--2175
171
3.0
166
75
13
449
40
12
13
33
1.82
1782--2951
171
6.9
168
71
11
453
38
11
13
33
1.82
3473--3765
154
1.9
155
81
4
360
37
11
14
36
1.82
3676--4204
289
1.9
279
81
4
566
34
12
13
37
1.83
3965--7323
171
19.6
171
74
5
2209
37
11
12
34
1.80
3965--7284
512
6.5
505
73
6
1908
36
11
12
34
1.80
6661--7318
343
1.9
343
81
4
801
37
11
14
35
1.83
8085--8787
171
4.1
168
72
7
423
33
14
10
36
1.81
8457--8784
170
1.9
171
79
6
371
37
15
9
37
1.80
9824--9850
10
2.7
10
100
0
54
70
0
0
29
0.88
12657--13021
171
2.1
172
80
5
425
35
12
12
40
1.79
14053--14478
171
2.5
167
79
5
442
41
12
11
34
1.80
15068--15690
171
3.6
168
76
5
475
39
13
12
32
1.82

Tables:   1

The End!