Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398799.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2083.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2597
ACGTcount: A:0.24, C:0.12, G:0.15, T:0.24

Warning! 644 characters in sequence are not A, C, G, or T


Found at i:135 original size:7 final size:7

Alignment explanation


    Indices: 123--162  Score: 62
    Period size: 7  Copynumber: 5.6  Consensus size: 7

        113 CCAGACCAAA

                   
        123 CCAAATT
          1 CCAAATT

                   
        130 CCAAATT
          1 CCAAATT

                    
        137 CCAATATT
          1 CCAA-ATT

                *  
        145 CCAAGTT
          1 CCAAATT

                   
        152 CCAAATT
          1 CCAAATT

                
        159 CCAA
          1 CCAA

        163 CATTATTTGT


Statistics
Matches: 30,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
   7   23  0.77
   8    7  0.23

ACGTcount: A:0.40, C:0.30, G:0.03, T:0.28


Consensus pattern (7 bp):   
CCAAATT
Done.