Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398810.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2094.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5209
ACGTcount: A:0.13, C:0.07, G:0.07, T:0.13

Warning! 3085 characters in sequence are not A, C, G, or T


Found at i:4069 original size:18 final size:17

Alignment explanation


    Indices: 4038--4080  Score: 59
    Period size: 18  Copynumber: 2.5  Consensus size: 17

       4028 CTTAAAAAAG

                            *
       4038 AAGAAGAAGAAAAAGAT
          1 AAGAAGAAGAAAAAGAA

                      *       
       4055 AAGAGAGAAGCAAAAGAA
          1 AAGA-AGAAGAAAAAGAA

                    
       4073 AAGAAGAA
          1 AAGAAGAA

       4081 AAGCATTACT


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  17    8  0.35
  18   15  0.65

ACGTcount: A:0.70, C:0.02, G:0.26, T:0.02


Consensus pattern (17 bp):   
AAGAAGAAGAAAAAGAA
Done.