genome.fa.s1569.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398822.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2106.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29920

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
667--1500	171	4.9	168	75	6	608	35	15	12	34	1.85
3802--4125	172	1.9	172	87	1	479	38	13	12	35	1.82
5738--6234	171	2.9	166	76	6	442	35	14	12	35	1.85
8770--10350	340	4.7	334	79	9	1518	36	14	13	35	1.86
8741--10350	171	9.5	170	78	7	1551	36	14	13	35	1.86
9467--9769	154	2.0	153	86	1	419	36	14	12	36	1.83
8651--10350	495	3.4	500	79	7	1445	36	14	13	35	1.86
11195--12081	171	5.2	170	82	4	890	36	13	14	35	1.85
12427--12974	170	3.2	171	81	8	602	36	12	15	35	1.86
13562--14316	171	4.4	170	81	4	847	36	15	14	34	1.87
15647--15679	15	2.1	16	88	5	50	63	3	0	33	1.10
16912--16952	21	2.0	21	85	0	55	19	24	7	48	1.74
16613--17588	171	5.7	172	73	4	551	35	11	13	34	1.81
19145--20146	171	5.9	171	79	5	997	36	14	12	35	1.85
19145--20095	341	2.8	337	81	4	1009	35	14	12	36	1.85
23150--23829	171	4.0	171	81	3	832	36	14	12	35	1.85
23151--23829	340	2.0	341	85	2	907	36	14	12	35	1.85
23932--24819	171	5.2	169	76	3	663	35	14	11	33	1.83
26323--26638	171	1.8	171	82	2	411	35	13	12	35	1.83

Tables:   1

The End!