Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398838.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_212.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2706
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.33


Found at i:1843 original size:83 final size:82

Alignment explanation


    Indices: 1746--1941  Score: 202
    Period size: 83  Copynumber: 2.4  Consensus size: 82

       1736 AAATTTTAAT

                    *           *                                     * *    
       1746 TATAAAATTTTAATATTATACAAA-TAAAGAAAAAAAATTAATATTAAAATGTT-AATTATAAAT
          1 TATAAAATATTAATATTATAAAAATTAAA-AAAAAAAA-TAATATTAAAATGTTAAATGACAAAT

                                
       1809 TATTAATACTTTAAATAAAA
         64 TATTAATACTTTAAAT-AAA

                             *            *   *   *          *           *   
       1829 TATAAAATATTAATATTCTAAAAATTAAAATAAATAATCATATTAAAATTTTAAATGACAATTTA
          1 TATAAAATATTAATATTATAAAAATTAAAAAAAAAAATAATATTAAAATGTTAAATGACAAATTA

                  *         *
       1894 TTAATATTTTAAATAAT
         66 TTAATACTTTAAATAAA

                        *                    
       1911 TATTAAAATAATAAATATTAT--AAATTAAAAA
          1 TA-TAAAAT-ATTAATATTATAAAAATTAAAAA

       1942 TTAAAAATTA


Statistics
Matches: 94,  Mismatches: 15, Indels: 9
        0.80            0.13        0.08

Matches are distributed among these distances:
  82   26  0.28
  83   55  0.59
  84   13  0.14

ACGTcount: A:0.57, C:0.03, G:0.02, T:0.39


Consensus pattern (82 bp):   
TATAAAATATTAATATTATAAAAATTAAAAAAAAAAATAATATTAAAATGTTAAATGACAAATTA
TTAATACTTTAAATAAA

Found at i:1951 original size:21 final size:22

Alignment explanation


    Indices: 1912--1954  Score: 61
    Period size: 21  Copynumber: 2.0  Consensus size: 22

       1902 TTAAATAATT

                          *       
       1912 ATTAAAATAATAAATATTATAA
          1 ATTAAAATAATAAAAATTATAA

                     *            
       1934 ATTAAAA-ATTAAAAATTATAA
          1 ATTAAAATAATAAAAATTATAA

       1955 TAAATGATAT


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  21   12  0.63
  22    7  0.37

ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35


Consensus pattern (22 bp):   
ATTAAAATAATAAAAATTATAA
Done.