Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398839.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2120.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2852
ACGTcount: A:0.25, C:0.10, G:0.10, T:0.26

Warning! 842 characters in sequence are not A, C, G, or T


Found at i:1494 original size:171 final size:171

Alignment explanation


    Indices: 1123--1509  Score: 470
    Period size: 171  Copynumber: 2.3  Consensus size: 171

       1113 NNNNNNNNNN

                 *   *        *                                              
       1123 CTTATTACTAACTTTAAATGGTTTTATAATCTCATAATTGATTTTAGGTTAAATATTTTTACATC
          1 CTTATCACTCACTTTAAAAGGTTTTATAATCTCATAATTGATTTTAGGTTAAATATTTTTACATC

                *                  *    *                  **    **     *    
       1188 CTTTGTTAAGACAGACTATAATTGAATGGTTGCCTTGAGAAACATGTGTAAAATGCCATTTATTA
         66 CTTTATTAAGACAGACTATAATTAAATGCTTGCCTTGAGAAACATGTAAAAAACACCATTCATTA

                                                     
       1253 GAAAAAAAAGTCCATTTATAGTCTCCCATTCCTTCAAAAGC
        131 GAAAAAAAAGTCCATTTATAGTCTCCCATTCCTTCAAAAGC

                      *  **********                *              *          
       1294 CTTATCACTCGCTNNNNNNNNNNTTATAATCTCATAATTAATTTTAGGTTAAATGTTTTTACAT-
          1 CTTATCACTCACTTTAAAAGGTTTTATAATCTCATAATTGATTTTAGGTTAAATATTTTTACATC

                                                  *                          
       1358 CTTGTATTAAGACAGACTATAATTAAATGCTTGCCTTGGGAAACATGTAAAAAACACCATTCATT
         66 CTT-TATTAAGACAGACTATAATTAAATGCTTGCCTTGAGAAACATGTAAAAAACACCATTCATT

            *  * *       *                  *  *      
       1423 TGATAGAAAAGTCTATTTATAGTCTCCCATTCGTTGAAAAGC
        130 AGAAAAAAAAGTCCATTTATAGTCTCCCATTCCTTCAAAAGC

                       *                                 
       1465 CTTATCACTCATTTTAAAAGGTTTTATAATCTCATAATTGATTTT
          1 CTTATCACTCACTTTAAAAGGTTTTATAATCTCATAATTGATTTT

       1510 NNNNNNNNNN


Statistics
Matches: 172,  Mismatches: 43, Indels: 2
        0.79            0.20        0.01

Matches are distributed among these distances:
 170    3  0.02
 171  169  0.98

ACGTcount: A:0.33, C:0.15, G:0.11, T:0.38


Consensus pattern (171 bp):   
CTTATCACTCACTTTAAAAGGTTTTATAATCTCATAATTGATTTTAGGTTAAATATTTTTACATC
CTTTATTAAGACAGACTATAATTAAATGCTTGCCTTGAGAAACATGTAAAAAACACCATTCATTA
GAAAAAAAAGTCCATTTATAGTCTCCCATTCCTTCAAAAGC
Done.