Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397269.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_12.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5666189
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 144833 characters in sequence are not A, C, G, or T
File 7 of 14
Found at i:2507188 original size:7 final size:7
Alignment explanation
Indices: 2507153--2507212 Score: 59
Period size: 8 Copynumber: 8.1 Consensus size: 7
2507143 TGTATATAAC
2507153 AATAAAT
1 AATAAAT
2507160 AAATAAAT
1 -AATAAAT
2507168 AAATAAAAT
1 -AAT-AAAT
2507177 AATAAAT
1 AATAAAT
*
2507184 CATAAAAT
1 AAT-AAAT
*
2507192 AATAAAA
1 AATAAAT
2507199 AAT-AAT
1 AATAAAT
2507205 AATAAAT
1 AATAAAT
2507212 A
1 A
2507213 CAAACAAGGT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
6 5 0.11
7 16 0.36
8 20 0.44
9 4 0.09
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (7 bp):
AATAAAT
Found at i:2508145 original size:22 final size:22
Alignment explanation
Indices: 2508117--2508198 Score: 110
Period size: 22 Copynumber: 3.5 Consensus size: 22
2508107 TCCAATAGTT
2508117 ATAACTTTTCATATGAAAAAAC
1 ATAACTTTTCATATGAAAAAAC
2508139 ATAACTTTTCATTTTCATATGAAAAAAC
1 ATAA-----C-TTTTCATATGAAAAAAC
2508167 ATAACTTTTCATATGAAAAAAC
1 ATAACTTTTCATATGAAAAAAC
2508189 ATAACTTTTC
1 ATAACTTTTC
2508199 CTTTACAATT
Statistics
Matches: 54, Mismatches: 0, Indels: 12
0.82 0.00 0.18
Matches are distributed among these distances:
22 31 0.57
23 1 0.02
27 1 0.02
28 21 0.39
ACGTcount: A:0.45, C:0.15, G:0.04, T:0.37
Consensus pattern (22 bp):
ATAACTTTTCATATGAAAAAAC
Found at i:2508162 original size:28 final size:28
Alignment explanation
Indices: 2508122--2508178 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
2508112 TAGTTATAAC
2508122 TTTTCATATGAAAAAACATAACTTTTCA
1 TTTTCATATGAAAAAACATAACTTTTCA
2508150 TTTTCATATGAAAAAACATAACTTTTCA
1 TTTTCATATGAAAAAACATAACTTTTCA
2508178 T
1 T
2508179 ATGAAAAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.42, C:0.14, G:0.04, T:0.40
Consensus pattern (28 bp):
TTTTCATATGAAAAAACATAACTTTTCA
Found at i:2508202 original size:28 final size:28
Alignment explanation
Indices: 2508121--2508202 Score: 113
Period size: 28 Copynumber: 3.1 Consensus size: 28
2508111 ATAGTTATAA
2508121 CTTTTCATATGAAAAAACATAACTTTTC
1 CTTTTCATATGAAAAAACATAACTTTTC
*
2508149 ATTTTCATATGAAAAAACATAA------
1 CTTTTCATATGAAAAAACATAACTTTTC
2508171 CTTTTCATATGAAAAAACATAACTTTTC
1 CTTTTCATATGAAAAAACATAACTTTTC
2508199 CTTT
1 CTTT
2508203 ACAATTTTTC
Statistics
Matches: 46, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
22 21 0.46
28 25 0.54
ACGTcount: A:0.41, C:0.16, G:0.04, T:0.39
Consensus pattern (28 bp):
CTTTTCATATGAAAAAACATAACTTTTC
Found at i:2515258 original size:132 final size:132
Alignment explanation
Indices: 2515017--2515266 Score: 351
Period size: 132 Copynumber: 1.9 Consensus size: 132
2515007 ACATGCTACT
* *
2515017 TCAACATCATAAACGGTAAATTTGAAAAGAAAATGTTGGAGGAACTAAGTTGAAACAATTTTCGA
1 TCAACATCATAAACGGTAAATTTGAAAAGAAAATGTTGGAGGAACTAAATTGAAACAATTTTCAA
* * ** *
2515082 AATCAATAGATTAAATTGTTATGATTTTGAGTAGAGGGATTAAATTGAAGAAATGTTAGTGTTGA
66 AATCAATAGACTAAATTGTTATGATTTTGAGTAAAGAAACTAAATTGAAGAAATGTTAGTGTTGA
2515147 TG
131 TG
* * *** *
2515149 TCAACATCATAAAGGGTAAATTTGAAACGAAAATGTTGGAGGGGTTAAATTGAAGCAATTTTCAA
1 TCAACATCATAAACGGTAAATTTGAAAAGAAAATGTTGGAGGAACTAAATTGAAACAATTTTCAA
2515214 AATCAA-AGGACTAAATTGTTACT-ATTTTGAGTAAAGAAACTAAATTGAAGAAA
66 AATCAATA-GACTAAATTGTTA-TGATTTTGAGTAAAGAAACTAAATTGAAGAAA
2515267 ATGCCTAAGT
Statistics
Matches: 103, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
131 1 0.01
132 101 0.98
133 1 0.01
ACGTcount: A:0.43, C:0.07, G:0.20, T:0.30
Consensus pattern (132 bp):
TCAACATCATAAACGGTAAATTTGAAAAGAAAATGTTGGAGGAACTAAATTGAAACAATTTTCAA
AATCAATAGACTAAATTGTTATGATTTTGAGTAAAGAAACTAAATTGAAGAAATGTTAGTGTTGA
TG
Found at i:2518612 original size:14 final size:15
Alignment explanation
Indices: 2518581--2518618 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
2518571 TTTACGGTAA
2518581 TATTTTTAAAAATAT
1 TATTTTTAAAAATAT
*
2518596 TATTTTTAAACAT-T
1 TATTTTTAAAAATAT
2518610 TATATTTTA
1 TAT-TTTTA
2518619 TTTAATTGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 4 0.19
15 17 0.81
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (15 bp):
TATTTTTAAAAATAT
Found at i:2520036 original size:44 final size:44
Alignment explanation
Indices: 2519988--2520074 Score: 104
Period size: 44 Copynumber: 2.0 Consensus size: 44
2519978 GTTGTTGGCA
* * *
2519988 TTATGTGACTA-GATTGTTGGGATTGTGAGATTAATTTTTAAGCG
1 TTATGTGACTAGGA-TGTAGGCATTGCGAGATTAATTTTTAAGCG
* * *
2520032 TTATGTGTCTAGGATGTAGGCATTGCGGGATTGATTTTTAAGC
1 TTATGTGACTAGGATGTAGGCATTGCGAGATTAATTTTTAAGC
2520075 ATTGCATGAT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
44 34 0.94
45 2 0.06
ACGTcount: A:0.23, C:0.07, G:0.29, T:0.41
Consensus pattern (44 bp):
TTATGTGACTAGGATGTAGGCATTGCGAGATTAATTTTTAAGCG
Found at i:2520085 original size:22 final size:22
Alignment explanation
Indices: 2520051--2520171 Score: 57
Period size: 22 Copynumber: 5.4 Consensus size: 22
2520041 TAGGATGTAG
**
2520051 GCATTGCGGGATTGATTTTTAA
1 GCATTGCATGATTGATTTTTAA
** *
2520073 GCATTGCATGATTGGGTTGTAA
1 GCATTGCATGATTGATTTTTAA
* ** *
2520095 GGATTGCGA-GCCTAATTTTTAA
1 GCATTGC-ATGATTGATTTTTAA
* * *
2520117 GTATTGCATGACT-AGTTTGTTAG
1 GCATTGCATGATTGA-TTT-TTAA
* * *
2520140 GCATTGCCTGCTTGGTTTATTAA
1 GCATTGCATGATTGATTT-TTAA
2520163 GCATTGCAT
1 GCATTGCAT
2520172 TACAAATTGA
Statistics
Matches: 71, Mismatches: 23, Indels: 9
0.69 0.22 0.09
Matches are distributed among these distances:
21 2 0.03
22 42 0.59
23 27 0.38
ACGTcount: A:0.22, C:0.12, G:0.26, T:0.40
Consensus pattern (22 bp):
GCATTGCATGATTGATTTTTAA
Found at i:2523673 original size:15 final size:13
Alignment explanation
Indices: 2523636--2523661 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2523626 TAAAGCTTGG
2523636 ATTAAAAGCTCAC
1 ATTAAAAGCTCAC
2523649 ATTAAAAGCTCAC
1 ATTAAAAGCTCAC
2523662 TTTGTAAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.08, T:0.23
Consensus pattern (13 bp):
ATTAAAAGCTCAC
Found at i:2525532 original size:26 final size:27
Alignment explanation
Indices: 2525512--2525562 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
2525502 TAAATTTATC
*
2525512 AAAAAAATA-GTTAATAGAAATTAAGA
1 AAAAAAAAAGGTTAATAGAAATTAAGA
*
2525538 AAAAAAAAAGGTTAGTAGAAATTAA
1 AAAAAAAAAGGTTAATAGAAATTAA
2525563 CTACTCTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.65, C:0.00, G:0.14, T:0.22
Consensus pattern (27 bp):
AAAAAAAAAGGTTAATAGAAATTAAGA
Found at i:2526613 original size:18 final size:19
Alignment explanation
Indices: 2526592--2526627 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
2526582 GAAAAGAAGG
2526592 AAAAATAAAATT-AGAAAT
1 AAAAATAAAATTGAGAAAT
*
2526610 AAAATTAAAATTGAGAAA
1 AAAAATAAAATTGAGAAA
2526628 ATGTAATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.22
Consensus pattern (19 bp):
AAAAATAAAATTGAGAAAT
Found at i:2526693 original size:14 final size:16
Alignment explanation
Indices: 2526665--2526697 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
2526655 TAAGTTACAT
2526665 AATTATTAGATAATAA
1 AATTATTAGATAATAA
2526681 AATTATTA-A-AATAA
1 AATTATTAGATAATAA
2526695 AAT
1 AAT
2526698 GAATGTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 1 0.06
16 8 0.47
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (16 bp):
AATTATTAGATAATAA
Found at i:2532823 original size:15 final size:16
Alignment explanation
Indices: 2532803--2532838 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
2532793 ATATTAATAT
2532803 ATAAAT-TACATTTTG
1 ATAAATCTACATTTTG
*
2532818 ATAAATCTACTTTTTG
1 ATAAATCTACATTTTG
2532834 ATAAA
1 ATAAA
2532839 ATTTAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.44
Consensus pattern (16 bp):
ATAAATCTACATTTTG
Found at i:2536140 original size:2 final size:2
Alignment explanation
Indices: 2536133--2536169 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
2536123 NNNNNNNNNN
2536133 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2536170 AAAGTGATAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:2537032 original size:17 final size:16
Alignment explanation
Indices: 2537010--2537048 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
2537000 GAAATACAAT
* *
2537010 TAAAAAGTTAAAATGAC
1 TAAAAAGATAAAA-AAC
2537027 TAAAAAGATAAAAAAC
1 TAAAAAGATAAAAAAC
2537043 TAAAAA
1 TAAAAA
2537049 CACAAAACAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.69, C:0.05, G:0.08, T:0.18
Consensus pattern (16 bp):
TAAAAAGATAAAAAAC
Found at i:2537805 original size:21 final size:21
Alignment explanation
Indices: 2537781--2537823 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
2537771 ACTTCCATGG
2537781 TGTTTCTTGGTCCCTTGGTCC
1 TGTTTCTTGGTCCCTTGGTCC
2537802 TGTTTCTTGGTCCCTTGGTCC
1 TGTTTCTTGGTCCCTTGGTCC
2537823 T
1 T
2537824 CCATCTTCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.00, C:0.28, G:0.23, T:0.49
Consensus pattern (21 bp):
TGTTTCTTGGTCCCTTGGTCC
Found at i:2537830 original size:21 final size:21
Alignment explanation
Indices: 2537785--2537830 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
2537775 CCATGGTGTT
***
2537785 TCTTGGTCCCTTGGTCCTGTT
1 TCTTGGTCCCTTGGTCCTCCA
2537806 TCTTGGTCCCTTGGTCCTCCA
1 TCTTGGTCCCTTGGTCCTCCA
2537827 TCTT
1 TCTT
2537831 CCAGATGACG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.02, C:0.33, G:0.20, T:0.46
Consensus pattern (21 bp):
TCTTGGTCCCTTGGTCCTCCA
Found at i:2537993 original size:12 final size:12
Alignment explanation
Indices: 2537976--2538002 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
2537966 TTAGATATTA
2537976 ATTTTTAAAAAT
1 ATTTTTAAAAAT
2537988 ATTTTTAAAAAT
1 ATTTTTAAAAAT
2538000 ATT
1 ATT
2538003 AATTTTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
ATTTTTAAAAAT
Found at i:2539365 original size:22 final size:22
Alignment explanation
Indices: 2539322--2539365 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
2539312 CAATTACTTA
** * *
2539322 TTAAGCATTGCGTTACTGGTTT
1 TTAAGCATTAAGTCACTAGTTT
2539344 TTAAGCATTAAGTCACTAGTTT
1 TTAAGCATTAAGTCACTAGTTT
2539366 CTAGGTATAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.25, C:0.14, G:0.18, T:0.43
Consensus pattern (22 bp):
TTAAGCATTAAGTCACTAGTTT
Found at i:2540637 original size:42 final size:42
Alignment explanation
Indices: 2540558--2540638 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
2540548 CAATATAGAA
* * * *
2540558 CATGCTACAATTGTTGTGTTAGAAGATGTTAAATGTGATAAC
1 CATGCCACAACTGTTGTCTTAGAAGATATTAAATGTGATAAC
* *
2540600 CATGCCACAACTGTTGTCTTAGAAGATATTCAGTGTGAT
1 CATGCCACAACTGTTGTCTTAGAAGATATTAAATGTGAT
2540639 GACCCTATTT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
CATGCCACAACTGTTGTCTTAGAAGATATTAAATGTGATAAC
Found at i:2540677 original size:35 final size:34
Alignment explanation
Indices: 2540631--2540702 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 34
2540621 GAAGATATTC
*
2540631 AGTGTGATGACCCTATTTATGACAACCCCATCGCT
1 AGTGTGATGACCCCATTTATGACAACCCCATC-CT
2540666 AGTGTGATGACCCCATTTATGACAACCCCATCCT
1 AGTGTGATGACCCCATTTATGACAACCCCATCCT
2540700 AGT
1 AGT
2540703 AACAACGGGA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
34 5 0.14
35 31 0.86
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (34 bp):
AGTGTGATGACCCCATTTATGACAACCCCATCCT
Found at i:2543491 original size:20 final size:21
Alignment explanation
Indices: 2543466--2543504 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
2543456 TTTGTATCTC
2543466 ATCAAATCAAAT-AAAAAAAA
1 ATCAAATCAAATCAAAAAAAA
2543486 ATCAAATCAAATCAAAAAA
1 ATCAAATCAAATCAAAAAA
2543505 CTAAAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.72, C:0.13, G:0.00, T:0.15
Consensus pattern (21 bp):
ATCAAATCAAATCAAAAAAAA
Found at i:2544362 original size:2 final size:2
Alignment explanation
Indices: 2544355--2544396 Score: 75
Period size: 2 Copynumber: 20.5 Consensus size: 2
2544345 TGTAGCATCT
2544355 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TCA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA T
2544397 TGATATAAAC
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 37 0.95
3 2 0.05
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2579141 original size:11 final size:11
Alignment explanation
Indices: 2579125--2579152 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
2579115 GCTTGCTTAA
2579125 GACCATATAAT
1 GACCATATAAT
2579136 GACCATATAAT
1 GACCATATAAT
2579147 GACCAT
1 GACCAT
2579153 TTGAGGAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.43, C:0.21, G:0.11, T:0.25
Consensus pattern (11 bp):
GACCATATAAT
Found at i:2579407 original size:21 final size:19
Alignment explanation
Indices: 2579371--2579411 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
2579361 ACATGTTGAG
2579371 TAGTTAATTTAAGTTATTT
1 TAGTTAATTTAAGTTATTT
*
2579390 TAGTTAAATTTTATGTTATTT
1 TAGTT-AA-TTTAAGTTATTT
2579411 T
1 T
2579412 GTTTTAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 5 0.26
20 2 0.11
21 12 0.63
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.61
Consensus pattern (19 bp):
TAGTTAATTTAAGTTATTT
Found at i:2584073 original size:2 final size:2
Alignment explanation
Indices: 2584066--2584096 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
2584056 CTAAACAGAC
2584066 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2584097 ATTTTAAAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2585334 original size:150 final size:150
Alignment explanation
Indices: 2585066--2585482 Score: 612
Period size: 150 Copynumber: 2.8 Consensus size: 150
2585056 TACATCCCAC
* *
2585066 TATGTACTAATATATAAAAC---TTTGAAACGTTCATAATTTCAAAGTCAAGCATCTCAAATACG
1 TATGTACTAATATATAAAACTTGTTTGAAACGTTCATAATTTCAAAGTTAAGCATCTTAAATAC-
* * *
2585128 A-AGGAAATCTGGTTTAACCTACCAAGTATTTTTCCTTTATGAAATTAAGAATATAGAAATATAA
65 ATAGGAAAACTAGTTTAACCTACCAAGTATTTTTCCTTTCTGAAATTAAGAATATAGAAATATAA
* *
2585192 ATACAAA-CTGTGGACATAAGT
130 ATAAAAATC-ATGGACATAAGT
*
2585213 TATGTACTAATATATAAAACTTGTTTGAAACATTCATAATTTCAAAGTTAAGCATCTTAAATACA
1 TATGTACTAATATATAAAACTTGTTTGAAACGTTCATAATTTCAAAGTTAAGCATCTTAAATACA
* * * *
2585278 TAGGAAAACTAGCTTAACCTACCAAGTATTTTTCCCTTCTGAAATTAAGAATATAGAAGTATCAA
66 TAGGAAAACTAGTTTAACCTACCAAGTATTTTTCCTTTCTGAAATTAAGAATATAGAAATATAAA
2585343 TAAAAATCATGGACATAAGT
131 TAAAAATCATGGACATAAGT
* *
2585363 TATGTACTAATACATAAAACTTGTTTGAAACGTTCATAATTTCAAAG-TCAGCCATCTTAAATAC
1 TATGTACTAATATATAAAACTTGTTTGAAACGTTCATAATTTCAAAGTTAAG-CATCTTAAATAC
* * *
2585427 ATAGGAAAATTAGTTTAACCTATCAAGTATTTTTCCTTTCTGAAATTAACAATATA
65 ATAGGAAAACTAGTTTAACCTACCAAGTATTTTTCCTTTCTGAAATTAAGAATATA
2585483 AATACAAACT
Statistics
Matches: 244, Mismatches: 20, Indels: 9
0.89 0.07 0.03
Matches are distributed among these distances:
147 20 0.08
149 4 0.02
150 219 0.90
151 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (150 bp):
TATGTACTAATATATAAAACTTGTTTGAAACGTTCATAATTTCAAAGTTAAGCATCTTAAATACA
TAGGAAAACTAGTTTAACCTACCAAGTATTTTTCCTTTCTGAAATTAAGAATATAGAAATATAAA
TAAAAATCATGGACATAAGT
Found at i:2585857 original size:2 final size:2
Alignment explanation
Indices: 2585850--2585881 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
2585840 AAAACATGCA
2585850 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2585882 GTCTTTGGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2586589 original size:2 final size:2
Alignment explanation
Indices: 2586582--2586609 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
2586572 CATCATCACC
2586582 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2586610 TTGAATAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2590248 original size:40 final size:40
Alignment explanation
Indices: 2590184--2590277 Score: 109
Period size: 40 Copynumber: 2.3 Consensus size: 40
2590174 TTATTCTAAG
*
2590184 TATTTTTTTAAAAAAAATTATTAATATTTAATTTT-ATCTT
1 TATTATTTT-AAAAAAATTATTAATATTTAATTTTAATCTT
* * *
2590224 ATATTATTTTAAAGAAATTTTTAATATTTAGTTTTAAATCTT
1 -TATTATTTTAAAAAAATTATTAATATTTAATTTT-AATCTT
*
2590266 TATAATTTTAAA
1 TATTATTTTAAA
2590278 TTGATAATTA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 22 0.48
41 19 0.41
42 5 0.11
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (40 bp):
TATTATTTTAAAAAAATTATTAATATTTAATTTTAATCTT
Found at i:2590850 original size:17 final size:19
Alignment explanation
Indices: 2590824--2590861 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
2590814 TGTCATAACT
2590824 AAAATAATAATAAT-TTAA
1 AAAATAATAATAATGTTAA
*
2590842 AAAAT-ATAATTATGTTAA
1 AAAATAATAATAATGTTAA
2590860 AA
1 AA
2590862 TCCATAAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (19 bp):
AAAATAATAATAATGTTAA
Found at i:2597159 original size:2 final size:2
Alignment explanation
Indices: 2597152--2597180 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
2597142 TTTATACAAT
2597152 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
2597181 TATATACATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:2606920 original size:23 final size:23
Alignment explanation
Indices: 2606876--2606920 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
2606866 TATGCACATA
**
2606876 AAAAAATATAAAAGTTGTAAATT
1 AAAAAATATAAAAAATGTAAATT
2606899 AAAAAATATAATAAAATG-AAAT
1 AAAAAATATAA-AAAATGTAAAT
2606921 AAGATAAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (23 bp):
AAAAAATATAAAAAATGTAAATT
Found at i:2611397 original size:20 final size:19
Alignment explanation
Indices: 2611372--2611411 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
2611362 AATTTAATCT
*
2611372 ACTAATATAATAAAGAATAA
1 ACTAATA-AACAAAGAATAA
*
2611392 ACTAATAAACAAAGATTAA
1 ACTAATAAACAAAGAATAA
2611411 A
1 A
2611412 AAAACATCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.65, C:0.07, G:0.05, T:0.23
Consensus pattern (19 bp):
ACTAATAAACAAAGAATAA
Found at i:2616525 original size:28 final size:28
Alignment explanation
Indices: 2616485--2616543 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
2616475 AAAAATTAAA
*
2616485 TTATTTAAATAATATTTTAT-TTTTTATT
1 TTATTTAAATAAT-TTTTATATTTTTACT
*
2616513 TTATTTAATTAATTTTTATATTTTTACT
1 TTATTTAAATAATTTTTATATTTTTACT
2616541 TTA
1 TTA
2616544 AATTCAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 6 0.21
28 22 0.79
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.68
Consensus pattern (28 bp):
TTATTTAAATAATTTTTATATTTTTACT
Found at i:2619790 original size:16 final size:16
Alignment explanation
Indices: 2619748--2619793 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
2619738 CGTAAAAGCT
2619748 TTTCATAAAACAATGA
1 TTTCATAAAACAATGA
* *
2619764 -TGC-T-GAACAATGA
1 TTTCATAAAACAATGA
2619777 TTTCATAAAACAATGA
1 TTTCATAAAACAATGA
2619793 T
1 T
2619794 ACTGAATATG
Statistics
Matches: 23, Mismatches: 4, Indels: 6
0.70 0.12 0.18
Matches are distributed among these distances:
13 8 0.35
14 3 0.13
15 3 0.13
16 9 0.39
ACGTcount: A:0.46, C:0.13, G:0.11, T:0.30
Consensus pattern (16 bp):
TTTCATAAAACAATGA
Found at i:2620485 original size:2 final size:2
Alignment explanation
Indices: 2620478--2620507 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
2620468 ATAGCTATAA
2620478 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
2620508 ATTTGAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:2621969 original size:30 final size:30
Alignment explanation
Indices: 2621935--2622013 Score: 88
Period size: 30 Copynumber: 2.7 Consensus size: 30
2621925 ATTGGTTGCT
*
2621935 AATTATAAAATTTTATTTAAATCTAAATAA
1 AATTATAAAATTTTATTTAAATATAAATAA
** * * * *
2621965 AATTATACCAGTTTAATTGAATATAATTAA
1 AATTATAAAATTTTATTTAAATATAAATAA
2621995 AA-TATAAAATTTTATTTAA
1 AATTATAAAATTTTATTTAA
2622014 TTTTTTTTAA
Statistics
Matches: 37, Mismatches: 12, Indels: 1
0.74 0.24 0.02
Matches are distributed among these distances:
29 12 0.32
30 25 0.68
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.43
Consensus pattern (30 bp):
AATTATAAAATTTTATTTAAATATAAATAA
Found at i:2633730 original size:3 final size:3
Alignment explanation
Indices: 2633722--2633748 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
2633712 TACTATCAAT
2633722 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
2633749 TCTTCAATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:2638055 original size:41 final size:40
Alignment explanation
Indices: 2637993--2638074 Score: 94
Period size: 41 Copynumber: 2.0 Consensus size: 40
2637983 AAGACAATGG
* * *
2637993 TAATGGAAAAGACTCCTCCTTTCCTTCATTTTTAACGTTAA
1 TAATGCAAAAGACTCCTCCTTTCCTTC-GTTCTAACGTTAA
* *
2638034 TAATGCAAAAGA-TTCTACCTTTCTTTCGTTCTAACGTTAA
1 TAATGCAAAAGACTCCT-CCTTTCCTTCGTTCTAACGTTAA
2638074 T
1 T
2638075 GCAAGCTTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
40 15 0.43
41 20 0.57
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (40 bp):
TAATGCAAAAGACTCCTCCTTTCCTTCGTTCTAACGTTAA
Found at i:2643666 original size:26 final size:25
Alignment explanation
Indices: 2643630--2643682 Score: 79
Period size: 26 Copynumber: 2.1 Consensus size: 25
2643620 ATTTAGATAC
2643630 AAAAGTAAATAGTAAATTTCTAAAAA
1 AAAAGTAAATAGTAAATTT-TAAAAA
* *
2643656 AAAAGTTAATAGTAAATTTTATAAA
1 AAAAGTAAATAGTAAATTTTAAAAA
2643681 AA
1 AA
2643683 TTATTGGTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.30
Consensus pattern (25 bp):
AAAAGTAAATAGTAAATTTTAAAAA
Found at i:2647965 original size:23 final size:23
Alignment explanation
Indices: 2647911--2647970 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
2647901 ACTAATACAT
*
2647911 TTTAAATATATTATATTAATAAG
1 TTTATATATATTATATTAATAAG
* *
2647934 TTTACTATATATCTATTTTATTAA-
1 TTTA-TATATAT-TATATTAATAAG
2647958 TTTATATATATTA
1 TTTATATATATTA
2647971 ACTAATTAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
22 2 0.06
23 11 0.34
24 10 0.31
25 9 0.28
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.55
Consensus pattern (23 bp):
TTTATATATATTATATTAATAAG
Found at i:2648768 original size:21 final size:21
Alignment explanation
Indices: 2648742--2648802 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
2648732 ACCTTATTTG
2648742 AGTCTTCATCAAGAGTTACTA
1 AGTCTTCATCAAGAGTTACTA
* ** *
2648763 AGTCTTCATCAAAAACTCCTA
1 AGTCTTCATCAAGAGTTACTA
*
2648784 AGTCCTCATCAAGAGTTAC
1 AGTCTTCATCAAGAGTTAC
2648803 AGGTGGGTCT
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (21 bp):
AGTCTTCATCAAGAGTTACTA
Found at i:2650265 original size:26 final size:28
Alignment explanation
Indices: 2650223--2650277 Score: 78
Period size: 26 Copynumber: 2.0 Consensus size: 28
2650213 TTTTGTAATT
2650223 TTTTATTATAAATATTACTAGAT-TATA
1 TTTTATTATAAATATTACTAGATATATA
* *
2650250 TTTTATT-TTAATATTACTATATATATA
1 TTTTATTATAAATATTACTAGATATATA
2650277 T
1 T
2650278 ATATATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (28 bp):
TTTTATTATAAATATTACTAGATATATA
Found at i:2667732 original size:43 final size:43
Alignment explanation
Indices: 2667683--2667767 Score: 161
Period size: 43 Copynumber: 2.0 Consensus size: 43
2667673 GTATAGTTCG
*
2667683 GATACTTATTTGGTGTTCGAGAATGATCATGGTTACACGATTT
1 GATACTTATTTGGTGTTCAAGAATGATCATGGTTACACGATTT
2667726 GATACTTATTTGGTGTTCAAGAATGATCATGGTTACACGATT
1 GATACTTATTTGGTGTTCAAGAATGATCATGGTTACACGATT
2667768 CGCCAATTCA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.39
Consensus pattern (43 bp):
GATACTTATTTGGTGTTCAAGAATGATCATGGTTACACGATTT
Found at i:2672303 original size:24 final size:24
Alignment explanation
Indices: 2672247--2672294 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
2672237 TATTATATAG
2672247 ATATTTTTAATAATCTTGGAAAGT
1 ATATTTTTAATAATCTTGGAAAGT
2672271 ATATTTTTAATAATCTTGGAAAGT
1 ATATTTTTAATAATCTTGGAAAGT
2672295 TTTCTTTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.12, T:0.46
Consensus pattern (24 bp):
ATATTTTTAATAATCTTGGAAAGT
Found at i:2672388 original size:14 final size:15
Alignment explanation
Indices: 2672365--2672393 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
2672355 GGTATTTAAC
2672365 TATTTATATTTTATG
1 TATTTATATTTTATG
2672380 TATTT-TATTTTATG
1 TATTTATATTTTATG
2672394 AATCTAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (15 bp):
TATTTATATTTTATG
Found at i:2677041 original size:2 final size:2
Alignment explanation
Indices: 2677034--2677068 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
2677024 TATGGTTGTT
*
2677034 TA TA TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2677069 GCACACAACT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:2677178 original size:23 final size:23
Alignment explanation
Indices: 2677148--2677194 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
2677138 CTTATGCTGT
2677148 CTACTGCAACATTTAAGGCAAAA
1 CTACTGCAACATTTAAGGCAAAA
2677171 CTACTGCAACATTTAAGGCAAAA
1 CTACTGCAACATTTAAGGCAAAA
2677194 C
1 C
2677195 CAATCGTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.43, C:0.23, G:0.13, T:0.21
Consensus pattern (23 bp):
CTACTGCAACATTTAAGGCAAAA
Found at i:2679212 original size:21 final size:21
Alignment explanation
Indices: 2679186--2679229 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
2679176 CATCACATAT
*
2679186 ACTTTTGTTTTAATTAAAACA
1 ACTTTTGTCTTAATTAAAACA
* *
2679207 ACTTTTGTCTTCATTAAGACA
1 ACTTTTGTCTTAATTAAAACA
2679228 AC
1 AC
2679230 ATATTTACTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.16, G:0.07, T:0.43
Consensus pattern (21 bp):
ACTTTTGTCTTAATTAAAACA
Found at i:2683806 original size:11 final size:9
Alignment explanation
Indices: 2683791--2683815 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
2683781 AATATTGTGT
2683791 TTATATAAG
1 TTATATAAG
2683800 TTATATAAG
1 TTATATAAG
2683809 TTATATA
1 TTATATA
2683816 GATGCTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (9 bp):
TTATATAAG
Found at i:2685681 original size:14 final size:14
Alignment explanation
Indices: 2685662--2685688 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
2685652 ATAAAGCTTG
2685662 CCACTTAAGAATTA
1 CCACTTAAGAATTA
2685676 CCACTTAAGAATT
1 CCACTTAAGAATT
2685689 GTTCATTGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (14 bp):
CCACTTAAGAATTA
Found at i:2696172 original size:61 final size:61
Alignment explanation
Indices: 2696085--2696393 Score: 370
Period size: 61 Copynumber: 5.0 Consensus size: 61
2696075 TTCACAAGGT
*
2696085 AGTAGCATCAACGCTGCAGCGCCACACTCCCAGCGCTGCAGCGCTGTCCCCTTCACCAAGC
1 AGTAGCATCAACGCTGCAGCGCCACACTACCAGCGCTGCAGCGCTGTCCCCTTCACCAAGC
* * * * * * *
2696146 AGTAGCATCAACACTGTAGTGTCACACTACCAGCGCTGCAGTGTTGTCCCCTTCACCAAGG
1 AGTAGCATCAACGCTGCAGCGCCACACTACCAGCGCTGCAGCGCTGTCCCCTTCACCAAGC
* * * *
2696207 AGTAGCATCAATGCTGCAACGCCACACTACCAGCGCTGCAGCACTGTCCCCCTACACCAAGC
1 AGTAGCATCAACGCTGCAGCGCCACACTACCAGCGCTGCAGCGCTGT-CCCCTTCACCAAGC
* ** * * * *
2696269 AGCA-C-TCCCAGTGCTGCAGCGCCACACTCCCAGTGCTGCAGCGCTGCCCCCTTCACCAAGT
1 AGTAGCAT--CAACGCTGCAGCGCCACACTACCAGCGCTGCAGCGCTGTCCCCTTCACCAAGC
* * *
2696330 AGTAGCATCAACGCTGCAGCGCCACACTACTAGCGTTGCAGCACTGTCCCCTTACACCAAGC
1 AGTAGCATCAACGCTGCAGCGCCACACTACCAGCGCTGCAGCGCTGTCCCCTT-CACCAAGC
2696392 AG
1 AG
2696394 CACTCCCAGC
Statistics
Matches: 204, Mismatches: 38, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
60 1 0.00
61 144 0.71
62 58 0.28
63 1 0.00
ACGTcount: A:0.24, C:0.39, G:0.20, T:0.17
Consensus pattern (61 bp):
AGTAGCATCAACGCTGCAGCGCCACACTACCAGCGCTGCAGCGCTGTCCCCTTCACCAAGC
Found at i:2696297 original size:22 final size:22
Alignment explanation
Indices: 2696271--2696312 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
2696261 CACCAAGCAG
2696271 CACTCCCAGTGCTGCAGCGCCA
1 CACTCCCAGTGCTGCAGCGCCA
2696293 CACTCCCAGTGCTGCAGCGC
1 CACTCCCAGTGCTGCAGCGC
2696313 TGCCCCCTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.17, C:0.45, G:0.24, T:0.14
Consensus pattern (22 bp):
CACTCCCAGTGCTGCAGCGCCA
Found at i:2696335 original size:123 final size:122
Alignment explanation
Indices: 2696075--2696407 Score: 413
Period size: 123 Copynumber: 2.7 Consensus size: 122
2696065 AGTGAACGCA
* * *
2696075 TTCA-CAAGGTAGTAGCATCAACGCTGCAGCGCCACACTCCCAGCGCTGCAGCGCTGT-CCCCTT
1 TTCACCAA-GTAGTAGCATCAACGCTGCAGCGCCACACTACCAGCGCTGCAGCACTGTCCCCCTA
* * * * * * * *
2696138 CACCAAGCAGTAGCATCAACA--CTGTAGTGTCACACTACCAGCGCTGCAGTGTTGTCCCC
65 CACCAAGCAGCA-C-TC-CCAGGCTGCAGCGCCACACTACCAGCGCTGCAGCGCTGCCCCC
* * *
2696197 TTCACCAAGGAGTAGCATCAATGCTGCAACGCCACACTACCAGCGCTGCAGCACTGTCCCCCTAC
1 TTCACCAAGTAGTAGCATCAACGCTGCAGCGCCACACTACCAGCGCTGCAGCACTGTCCCCCTAC
* *
2696262 ACCAAGCAGCACTCCCAGTGCTGCAGCGCCACACTCCCAGTGCTGCAGCGCTGCCCCC
66 ACCAAGCAGCACTCCCAG-GCTGCAGCGCCACACTACCAGCGCTGCAGCGCTGCCCCC
* * *
2696320 TTCACCAAGTAGTAGCATCAACGCTGCAGCGCCACACTACTAGCGTTGCAGCACTGTCCCCTTAC
1 TTCACCAAGTAGTAGCATCAACGCTGCAGCGCCACACTACCAGCGCTGCAGCACTGTCCCCCTAC
2696385 ACCAAGCAGCACTCCCAGCGCTG
66 ACCAAGCAGCACTCCCAG-GCTG
2696408 TCCCCCATTT
Statistics
Matches: 183, Mismatches: 23, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
120 2 0.01
121 2 0.01
122 49 0.27
123 130 0.71
ACGTcount: A:0.23, C:0.39, G:0.20, T:0.17
Consensus pattern (122 bp):
TTCACCAAGTAGTAGCATCAACGCTGCAGCGCCACACTACCAGCGCTGCAGCACTGTCCCCCTAC
ACCAAGCAGCACTCCCAGGCTGCAGCGCCACACTACCAGCGCTGCAGCGCTGCCCCC
Found at i:2696798 original size:20 final size:22
Alignment explanation
Indices: 2696773--2696812 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
2696763 CTTTATAAAA
2696773 TAAATTAT-TA-ATTACATAGT
1 TAAATTATGTATATTACATAGT
*
2696793 TAAATTGTGTATATTACATA
1 TAAATTATGTATATTACATA
2696813 AGTGAACGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 2 0.12
22 8 0.47
ACGTcount: A:0.42, C:0.05, G:0.07, T:0.45
Consensus pattern (22 bp):
TAAATTATGTATATTACATAGT
Found at i:2697227 original size:32 final size:32
Alignment explanation
Indices: 2697186--2697312 Score: 132
Period size: 32 Copynumber: 4.0 Consensus size: 32
2697176 TTGATCAAAG
2697186 CAACTAGTACTTAACTCATAGAAAAGTTTGAT
1 CAACTAGTACTTAACTCATAGAAAAGTTTGAT
** ** ** *
2697218 CAACTAGTACTTAACTTTTCTATGAG-TTAACT
1 CAACTAGTACTTAACTCATAGAAAAGTTTGA-T
***
2697250 TTTCTA-TACTTAACTCATAGAAAAGTTTGAT
1 CAACTAGTACTTAACTCATAGAAAAGTTTGAT
*
2697281 CAACTAGTACTTAACTCATAAAAAAGTTTGAT
1 CAACTAGTACTTAACTCATAGAAAAGTTTGAT
2697313 GTGAATGATG
Statistics
Matches: 71, Mismatches: 21, Indels: 6
0.72 0.21 0.06
Matches are distributed among these distances:
31 20 0.28
32 51 0.72
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.36
Consensus pattern (32 bp):
CAACTAGTACTTAACTCATAGAAAAGTTTGAT
Found at i:2697912 original size:241 final size:240
Alignment explanation
Indices: 2697480--2700376 Score: 3000
Period size: 241 Copynumber: 12.0 Consensus size: 240
2697470 NNNNNNNNNN
* *
2697480 TTCAAAATTGACGTGAAAAAGCCTTGACGTAAAACTGTAAGAATTGACGTAAAAGCTTGTAAAAG
1 TTCAAAATTGACGTGAAAAAACCTTGACGTAAAACTGTAAGAATTGACGTAAAAGCTTGTAAAGG
* **
2697545 TGGAATAACTAAATTTTAAATCTTAATGTAAATGTGTGAGAGTTAACGTAAC-AGATCAATTAAG
66 TGGAATAACTAAATTTTAAATCTTAACGTAAGCGTGTGAGAGTTAACGTAACAAG-TCAATTAAG
* * * *
2697609 TAAAAACAATGTAAATATAATG-AAAGCAAATATTTAAATTTATATTCTCGGGCTGAAAGTGTTT
130 TAAAAATAATGTAAATTTAATGAAAAGTAAATATTTAAATTTATATTCT-GGACTGAAAGTGTTT
********** *
2697673 NNNNNNNNNNAAATTTTAATTTTTAAATAAAAGATAACTAATTAAAA
194 AACGAAATAAAAATTTTAATTTTTAAATAAAAGATAACTAATTATAA
* * *
2697720 TTCAAAATTAACGTGAAAAAGCCTTGACGTAAAACTATAAGAATTGACGTAAAAGCTTGTAAAAG
1 TTCAAAATTGACGTGAAAAAACCTTGACGTAAAACTGTAAGAATTGACGTAAAAGCTTGT-AAAG
* *
2697785 GTAGAATAACTAAATTTTAAATCTTAACGTAAGCGTGTGACAGTTAACGTAACAAGTCAATTAAG
65 GTGGAATAACTAAATTTTAAATCTTAACGTAAGCGTGTGAGAGTTAACGTAACAAGTCAATTAAG
* ** * * *
2697850 TAAAAATAATATAAATTTAATTCAAAGTAAATTTTTAAATTTATATTCTAGACTGAAAGTGTTAA
130 TAAAAATAATGTAAATTTAATGAAAAGTAAATATTTAAATTTATATTCTGGACTGAAAGTGTTTA
* * * *
2697915 ACGATATAAAATTTTTAATTTTTAATTAAAGGATAACTAATTATAA
195 ACGAAATAAAAATTTTAATTTTTAAATAAAAGATAACTAATTATAA
* * * * * * *
2697961 TTAAAAATTGACGTGAAAAAATCTTGACGTATAATTATAAGAATTGACATAAAAGCTTGTAAAAG
1 TTCAAAATTGACGTGAAAAAACCTTGACGTAAAACTGTAAGAATTGACGTAAAAGCTTGTAAAGG
* * * *
2698026 TGGAATAACTAAATTTTAAATCTTAATGTAAGCGTGTGAGACTTAACGTAACAAGTTAATTAAGC
66 TGGAATAACTAAATTTTAAATCTTAACGTAAGCGTGTGAGAGTTAACGTAACAAGTCAATTAAGT
** *
2698091 AAAAATAATGTAAATTTAATGAAAAGTAAATATTTAAATTTATATTTCCT--ACCAAAAAGTATT
131 AAAAATAATGTAAATTTAATGAAAAGTAAATATTTAAATTTATA-TT-CTGGA-CTGAAAGTGTT
* *
2698154 TAACGATAA-AAAAATTTTAATTTTTTAAT-AAAGAATAACTAATTAAAA
193 TAACGA-AATAAAAATTTTAATTTTTAAATAAAAG-ATAACTAATTATAA
** ** *
2698202 TTCAAAATTGACGTG-AAAAAGTTTAGACGTAAAACTGTAAGAATTGATATAAAAGCTTGTACAG
1 TTCAAAATTGACGTGAAAAAACCTT-GACGTAAAACTGTAAGAATTGACGTAAAAGCTTGTAAAG
*
2698266 GTGGAATAACTAAATTTTAAATCTTAACGTAAGCGTGTGAGAGTTAACGTAACAAGTTAATTAAG
65 GTGGAATAACTAAATTTTAAATCTTAACGTAAGCGTGTGAGAGTTAACGTAACAAGTCAATTAAG
* * *
2698331 TAAAAATAATGTAAATTTAATAAAAAGTAAATATTTAAATTTATATTTTCGGGCTGAAAGTGTTT
130 TAAAAATAATGTAAATTTAATGAAAAGTAAATATTTAAATTTATATTCT-GGACTGAAAGTGTTT
* * * *
2698396 AACGAAGTAAAAATTTTAATTTTTCAATAAAGGATAACTAACTATAA
194 AACGAAATAAAAATTTTAATTTTTAAATAAAAGATAACTAATTATAA
* * * *
2698443 TTCAAAATTGACGTGAAAAAATCTTGACATAAAACTGTAAGAATTGACGCAAAAGCTCGTAAAGG
1 TTCAAAATTGACGTGAAAAAACCTTGACGTAAAACTGTAAGAATTGACGTAAAAGCTTGTAAAGG
* * **********
2698508 TGAAATAATTAAATTTTAAATCTTAACGTAAGNNNNNNNNNNTTAACGTAACAAGTCAATTAAGT
66 TGGAATAACTAAATTTTAAATCTTAACGTAAGCGTGTGAGAGTTAACGTAACAAGTCAATTAAGT
* *
2698573 AAAAACAACGTAAATTTAATGAAAAGTAAATATTTAAATTTATATTCTTGGACTGAAAGTGTTTA
131 AAAAATAATGTAAATTTAATGAAAAGTAAATATTTAAATTTATATTC-TGGACTGAAAGTGTTTA
* *
2698638 ACTATATAAAAATTTTAATTTTTAAATAAAAGATAACTAATTATAA
195 ACGAAATAAAAATTTTAATTTTTAAATAAAAGATAACTAATTATAA
* **********
2698684 GTCAAAATTGACGTGAAAAAACCTTGACGTAAAACTGTAAGAATTGACGTAAAANNNNNNNNNNG
1 TTCAAAATTGACGTGAAAAAACCTTGACGTAAAACTGTAAGAATTGACGTAAAAGCTTGTAAAGG
* *
2698749 TGGAATAACTAAATTTTAAATCTTAACGTAATCATGTGAGAGTTAACGTAACAAGTCAATTAAGT
66 TGGAATAACTAAATTTTAAATCTTAACGTAAGCGTGTGAGAGTTAACGTAACAAGTCAATTAAGT
* * * *
2698814 AAAAACAATTTAAATTTAATGAAAAGTAAATATTTAAATTTATATCCTTTGAGCTGAAAGTGTTT
131 AAAAATAATGTAAATTTAATGAAAAGTAAATATTTAAATTTATATTC-TGGA-CTGAAAGTGTTT
** * *
2698879 AACGAAATAAAAATTTTCCTTTTTCAATAAAGGATAACTAATTATAA
194 AACGAAATAAAAATTTTAATTTTTAAATAAAAGATAACTAATTATAA
* * * *
2698926 TTCAAAATTGATGTGAAAAAACTTTAACGTAAAACTGTAAGAATTGATGTAAAAGCTTGTAAAGG
1 TTCAAAATTGACGTGAAAAAACCTTGACGTAAAACTGTAAGAATTGACGTAAAAGCTTGTAAAGG
* * *
2698991 TAGAATAACTAAATTTTAAATCTTGATGTAAGCGTGTGAGAGTTAACGTAACAAGTCAATTAAGT
66 TGGAATAACTAAATTTTAAATCTTAACGTAAGCGTGTGAGAGTTAACGTAACAAGTCAATTAAGT
* * * **
2699056 AAAAATAATGTAAATTTAATAAAAAGTAAATATTTAAATTTATATTCTTGAGCTAAAAGCATTTA
131 AAAAATAATGTAAATTTAATGAAAAGTAAATATTTAAATTTATATTCTGGA-CTGAAAGTGTTTA
* * * *
2699121 ACGATATAAAAATTTTAATTTTTAATTAAAGGATAACTAGTTATAA
195 ACGAAATAAAAATTTTAATTTTTAAATAAAAGATAACTAATTATAA
* * *
2699167 TTCAAAATTGACGTGAAAAAACCTTAACGTAAAATTGTAAGAATTGACGTAAAAACTTGTAAAGG
1 TTCAAAATTGACGTGAAAAAACCTTGACGTAAAACTGTAAGAATTGACGTAAAAGCTTGTAAAGG
********** * * *
2699232 TNNNNNNNNNNAATTTTAAATCTTAACGTAAGCGTGTGAGAGTTAATGCAATAAGTCAATTAAGT
66 TGGAATAACTAAATTTTAAATCTTAACGTAAGCGTGTGAGAGTTAACGTAACAAGTCAATTAAGT
* * *
2699297 AAAAAAAATATAAATTTAATGAAAAGTAAATATTTAAATTTATATTCCTTGACTGAAAGTGTTTA
131 AAAAATAATGTAAATTTAATGAAAAGTAAATATTTAAATTTATATT-CTGGACTGAAAGTGTTTA
* *
2699362 CCGAAATAAAAATTTTAATTTTTCAAT-AAAGAATAACTAATTATAA
195 ACGAAATAAAAATTTTAATTTTTAAATAAAAG-ATAACTAATTATAA
********* *
2699408 TTCAAAATTGACGT-AAAANNNNNNNNNNGTAAAACTGTAAGAATTGACGTAAAAGCTTGTAAAT
1 TTCAAAATTGACGTGAAAA-AACCTTGACGTAAAACTGTAAGAATTGACGTAAAAGCTTGTAAAG
* * * *
2699472 GTGGAATAACTAAATTTTAAATCTTAACATAAACGTGTGAGAGTTAACGGAAAAAGTCAATTAAG
65 GTGGAATAACTAAATTTTAAATCTTAACGTAAGCGTGTGAGAGTTAACGTAACAAGTCAATTAAG
* * *
2699537 TAAAAACAATGTAAATTTAATGAAAAGTAAATA-TTACATTTATATTCCTGGGCTGAAAGTGTTT
130 TAAAAATAATGTAAATTTAATGAAAAGTAAATATTTAAATTTATATT-CTGGACTGAAAGTGTTT
** * * *
2699601 AACGATGTAAAAATTTTAA-TTTTCAGTAAATGATAACTAATTATAA
194 AACGAAATAAAAATTTTAATTTTTAAATAAAAGATAACTAATTATAA
* ** **********
2699647 TTTAAAATTGACGTGAAAAAGTCTTGACGTAAAACTGTNNNNNNNNNNGTAAAAGCTTGTAAAGG
1 TTCAAAATTGACGTGAAAAAACCTTGACGTAAAACTGTAAGAATTGACGTAAAAGCTTGTAAAGG
* *
2699712 TGGAATAACTAAATTTTAAATCTTAACGTAAGCGTGTGAGAGTTAACGTAAGAAGTTAATTAAGT
66 TGGAATAACTAAATTTTAAATCTTAACGTAAGCGTGTGAGAGTTAACGTAACAAGTCAATTAAGT
* * *
2699777 AAAAATAATATAAATTTAATTAAAAGTAAATATTTAAATTTATATTCTTGGGCTGAAAGTGTTTA
131 AAAAATAATGTAAATTTAATGAAAAGTAAATATTTAAATTTATATTC-TGGACTGAAAGTGTTTA
* * *
2699842 ATGATATAAAGATTTTAATTTTTAAATAAATGATAACAAGGATAAAACTAATTATAA
195 ACGAAATAAAAATTTTAA-TTTT---T-AA--ATAA-AA-GAT--AACTAATTATAA
* * * * **********
2699899 TTCAAAATTGACATGAAAAAGCCTTAACATAAAACTGTAAGAATTGACGTAANNNNNNNNNNAGG
1 TTCAAAATTGACGTGAAAAAACCTTGACGTAAAACTGTAAGAATTGACGTAAAAGCTTGTAAAGG
* * * *** *
2699964 TGAAATAACTAAATTTTAAATTTTAACATAAATATGTGAGAGTTAACATAACAAGTCAATTAAGT
66 TGGAATAACTAAATTTTAAATCTTAACGTAAGCGTGTGAGAGTTAACGTAACAAGTCAATTAAGT
* * * ********* *
2700029 AAAAA-AATTTAATTTTATTGAAAA--AAATATTTAAATTTATATTNNNNNNNNNNAAGTATTTA
131 AAAAATAATGTAAATTTAATGAAAAGTAAATATTTAAATTTATATT-CTGGACTGAAAGTGTTTA
* * * * * *
2700091 ACGATATATAAATTTGAATTTTTAAATAAAAATAATAAGGGTAAAAATAATTATAG
195 ACGAAATAAAAATTTTAA-TTTT---T--AAATAA-AA--G-ATAACTAATTATAA
* * * * ** * * *
2700147 TTTAAAATTAACAT-AGATAAGTCTTAACGTAAAACTGTAAGAATTGACGTAAAAACTTATAAAG
1 TTCAAAATTGACGTGA-AAAAACCTTGACGTAAAACTGTAAGAATTGACGTAAAAGCTTGTAAAG
* * ** * * *
2700211 TTGGAATAACTAAATTTTAAATCTTAATGTAAATGTGTGAAAGTTAACGTAATAAGTTAATTAAG
65 GTGGAATAACTAAATTTTAAATCTTAACGTAAGCGTGTGAGAGTTAACGTAACAAGTCAATTAAG
* ** * * * * * * * * *
2700276 TAAAAAAAACCTAATTTTAGTGAAAAATAAATATTTATATTTATATTATTGAGCTAAAAGTATGT
130 TAAAAATAATGTAAATTTAATGAAAAGTAAATATTTAAATTTATATTCTGGA-CTGAAAGTGTTT
* *
2700341 AACGATATATAAATTTTAATTTTTAAATAAAA-ATAA
194 AACGAAATAAAAATTTTAATTTTTAAATAAAAGATAA
2700377 TAAAAATAAA
Statistics
Matches: 2226, Mismatches: 386, Indels: 90
0.82 0.14 0.03
Matches are distributed among these distances:
239 151 0.07
240 280 0.13
241 1151 0.52
242 254 0.11
244 2 0.00
245 7 0.00
246 1 0.00
247 2 0.00
248 127 0.06
249 69 0.03
250 11 0.00
251 58 0.03
252 113 0.05
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.32
Consensus pattern (240 bp):
TTCAAAATTGACGTGAAAAAACCTTGACGTAAAACTGTAAGAATTGACGTAAAAGCTTGTAAAGG
TGGAATAACTAAATTTTAAATCTTAACGTAAGCGTGTGAGAGTTAACGTAACAAGTCAATTAAGT
AAAAATAATGTAAATTTAATGAAAAGTAAATATTTAAATTTATATTCTGGACTGAAAGTGTTTAA
CGAAATAAAAATTTTAATTTTTAAATAAAAGATAACTAATTATAA
Found at i:2699153 original size:724 final size:721
Alignment explanation
Indices: 2697480--2700371 Score: 3148
Period size: 724 Copynumber: 4.0 Consensus size: 721
2697470 NNNNNNNNNN
* * * *
2697480 TTCAAAATTGACGTGAAAAAGCCTTGACGTAAAACTGTAAGAATTGACGTAAAAGCTTGTAAAAG
1 TTCAAAATTGACGTGAAAAA-CTTTAACGTAAAACTGTAAGAATTGATGTAAAAGCTTGTAAAGG
* **
2697545 TGGAATAACTAAATTTTAAATCTTAATGTAAATGTGTGAGAGTTAACGTAAC-AGATCAATTAAG
65 TGGAATAACTAAATTTTAAATCTTAACGTAAGCGTGTGAGAGTTAACGTAACAAG-TCAATTAAG
* * * * *
2697609 TAAAAACAATGTAAATATAAT-GAAAGCAAATATTTAAATTTATATTCTCGGGCTGAAAGTGTTT
129 TAAAAATAATGTAAATTTAATAAAAAGTAAATATTTAAATTTATATTCTTGGGCTGAAAGTGTTT
********** * * *
2697673 NNNNNNNNNNAAATTTTAATTTTTAAA-TAAAAGATAACTAATTAAAATTCAAAATTAACGTGAA
194 AACGATATAAAAATTTTAATTTTTAAATTAAAGGATAACTAATTATAATTCAAAATTGACGTGAA
* * * *
2697737 AAAGCCTTGACGTAAAACTATAAGAATTGACGTAAAAGCTTGTAAAAGGTAGAATAACTAAATTT
259 AAAACCTTAACATAAAACTGTAAGAATTGACGTAAAAGCTTGT-AAAGGTA-AATAACTAAATTT
*
2697802 TAAATCTTAACGTAAGCGTGTGACAGTTAACGTAACAAGTCAATTAAGTAAAAATAATATAAATT
322 TAAATCTTAACGTAAGCGTGTGACAGTTAACGTAACAAGTCAATTAAGTAAAAAAAATATAAATT
** * * * *
2697867 TAATTCAAAGTAAATTTTTAAATTTATATTCTAGACTGAAAGTGTTAAACGATATAAAATTTTTA
387 TAATGAAAAGTAAATATTTAAATTTATATTCTTGACTGAAAGTGTTTAACGATATAAAAATTTTA
* * * * * *
2697932 ATTTTTAATTAAAGGATAACTAATTATAATTAAAAATTGACGTGAAAAAATCTTGACGTATAATT
452 ATTTTTAAATAAAAGATAACTAATTATAATTCAAAATTGACGTGAAAAAACCTTGACGTAAAACT
* * * *
2697997 ATAAGAATTGACATAAAAGCTTGTAAAAGTGGAATAACTAAATTTTAAATCTTAATGTAAGCGTG
517 GTAAGAATTGACGTAAAAGCTTGTAAAAGTGGAATAACTAAATTTTAAATCTTAACGTAAACGTG
* * * *
2698062 TGAGACTTAACGTAACAAGTTAATTAAGCAAAAATAATGTAAATTTAATGAAAAGTAAATATTTA
582 TGAGAGTTAACGTAACAAGTCAATTAAGTAAAAACAATGTAAATTTAATGAAAAGTAAATATTTA
* ** * * *
2698127 AATTTATAT--TTCCT-ACCAAAAAGTATTTAACGATAA-AAAAATTTTAATTTTTTAATAAAGA
647 AATTTATATCCTT--TGAGCTGAAAGTGTTTAACGA-AATAAAAATTTT-ATTTTTCAATAAAGG
*
2698188 ATAACTAATTAAAA
708 ATAACTAATTATAA
* * *
2698202 TTCAAAATTGACGTGAAAAAGTTTAGACGTAAAACTGTAAGAATTGATATAAAAGCTTGTACAGG
1 TTCAAAATTGACGTGAAAAACTTTA-ACGTAAAACTGTAAGAATTGATGTAAAAGCTTGTAAAGG
*
2698267 TGGAATAACTAAATTTTAAATCTTAACGTAAGCGTGTGAGAGTTAACGTAACAAGTTAATTAAGT
65 TGGAATAACTAAATTTTAAATCTTAACGTAAGCGTGTGAGAGTTAACGTAACAAGTCAATTAAGT
2698332 AAAAATAATGTAAATTTAATAAAAAGTAAATATTTAAATTTATATT-TTCGGGCTGAAAGTGTTT
130 AAAAATAATGTAAATTTAATAAAAAGTAAATATTTAAATTTATATTCTT-GGGCTGAAAGTGTTT
* *
2698396 AACGA-AGTAAAAATTTTAATTTTTCAA-TAAAGGATAACTAACTATAATTCAAAATTGACGTGA
194 AACGATA-TAAAAATTTTAATTTTTAAATTAAAGGATAACTAATTATAATTCAAAATTGACGTGA
* * * * *
2698459 AAAAATCTTGACATAAAACTGTAAGAATTGACGCAAAAGCTCGTAAAGGTGAAATAATTAAATTT
258 AAAAACCTTAACATAAAACTGTAAGAATTGACGTAAAAGCTTGTAAAGGT-AAATAACTAAATTT
********** * **
2698524 TAAATCTTAACGTAAGNNNNNNNNNNTTAACGTAACAAGTCAATTAAGTAAAAACAACGTAAATT
322 TAAATCTTAACGTAAGCGTGTGACAGTTAACGTAACAAGTCAATTAAGTAAAAAAAATATAAATT
*
2698589 TAATGAAAAGTAAATATTTAAATTTATATTCTTGGACTGAAAGTGTTTAACTATATAAAAATTTT
387 TAATGAAAAGTAAATATTTAAATTTATATTCTT-GACTGAAAGTGTTTAACGATATAAAAATTTT
*
2698654 AATTTTTAAATAAAAGATAACTAATTATAAGTCAAAATTGACGTGAAAAAACCTTGACGTAAAAC
451 AATTTTTAAATAAAAGATAACTAATTATAATTCAAAATTGACGTGAAAAAACCTTGACGTAAAAC
********** * *
2698719 TGTAAGAATTGACGTAAAANNNNNNNNNNGTGGAATAACTAAATTTTAAATCTTAACGTAATCAT
516 TGTAAGAATTGACGTAAAAGCTTGTAAAAGTGGAATAACTAAATTTTAAATCTTAACGTAAACGT
*
2698784 GTGAGAGTTAACGTAACAAGTCAATTAAGTAAAAACAATTTAAATTTAATGAAAAGTAAATATTT
581 GTGAGAGTTAACGTAACAAGTCAATTAAGTAAAAACAATGTAAATTTAATGAAAAGTAAATATTT
*
2698849 AAATTTATATCCTTTGAGCTGAAAGTGTTTAACGAAATAAAAATTTTCCTTTTTCAATAAAGGAT
646 AAATTTATATCCTTTGAGCTGAAAGTGTTTAACGAAATAAAAATTTT-ATTTTTCAATAAAGGAT
2698914 AACTAATTATAA
710 AACTAATTATAA
*
2698926 TTCAAAATTGATGTGAAAAAACTTTAACGTAAAACTGTAAGAATTGATGTAAAAGCTTGTAAAGG
1 TTCAAAATTGACGTG-AAAAACTTTAACGTAAAACTGTAAGAATTGATGTAAAAGCTTGTAAAGG
* * *
2698991 TAGAATAACTAAATTTTAAATCTTGATGTAAGCGTGTGAGAGTTAACGTAACAAGTCAATTAAGT
65 TGGAATAACTAAATTTTAAATCTTAACGTAAGCGTGTGAGAGTTAACGTAACAAGTCAATTAAGT
* * **
2699056 AAAAATAATGTAAATTTAATAAAAAGTAAATATTTAAATTTATATTCTTGAGCTAAAAGCATTTA
130 AAAAATAATGTAAATTTAATAAAAAGTAAATATTTAAATTTATATTCTTGGGCTGAAAGTGTTTA
*
2699121 ACGATATAAAAATTTTAATTTTT-AATTAAAGGATAACTAGTTATAATTCAAAATTGACGTGAAA
195 ACGATATAAAAATTTTAATTTTTAAATTAAAGGATAACTAATTATAATTCAAAATTGACGTGAAA
* * * *********
2699185 AAACCTTAACGTAAAATTGTAAGAATTGACGTAAAAACTTGTAAAGGTNNNNNNNNNNAATTTTA
260 AAACCTTAACATAAAACTGTAAGAATTGACGTAAAAGCTTGTAAAGGT-AAATAACTAAATTTTA
* * * *
2699250 AATCTTAACGTAAGCGTGTGAGAGTTAATGCAATAAGTCAATTAAGTAAAAAAAATATAAATTTA
324 AATCTTAACGTAAGCGTGTGACAGTTAACGTAACAAGTCAATTAAGTAAAAAAAATATAAATTTA
* *
2699315 ATGAAAAGTAAATATTTAAATTTATATTCCTTGACTGAAAGTGTTTACCGAAATAAAAATTTTAA
389 ATGAAAAGTAAATATTTAAATTTATATT-CTTGACTGAAAGTGTTTAACGATATAAAAATTTTAA
* *********
2699380 TTTTTCAAT-AAAGAATAACTAATTATAATTCAAAATTGACGT-AAAANNNNNNNNNNGTAAAAC
453 TTTTTAAATAAAAG-ATAACTAATTATAATTCAAAATTGACGTGAAAA-AACCTTGACGTAAAAC
* *
2699443 TGTAAGAATTGACGTAAAAGCTTGTAAATGTGGAATAACTAAATTTTAAATCTTAACATAAACGT
516 TGTAAGAATTGACGTAAAAGCTTGTAAAAGTGGAATAACTAAATTTTAAATCTTAACGTAAACGT
* *
2699508 GTGAGAGTTAACGGAAAAAGTCAATTAAGTAAAAACAATGTAAATTTAATGAAAAGTAAATA-TT
581 GTGAGAGTTAACGTAACAAGTCAATTAAGTAAAAACAATGTAAATTTAATGAAAAGTAAATATTT
* * ** * * *
2699572 ACATTTATATTCC--TGGGCTGAAAGTGTTTAACGATGTAAAAATTTTAATTTTCAGTAAATGAT
646 AAATTTATA-TCCTTTGAGCTGAAAGTGTTTAACGAAATAAAAATTTTATTTTTCAATAAAGGAT
2699635 AACTAATTATAA
710 AACTAATTATAA
* * * **********
2699647 TTTAAAATTGACGTGAAAAAGTCTTGACGTAAAACTGTNNNNNNNNNNGTAAAAGCTTGTAAAGG
1 TTCAAAATTGACGTGAAAAACT-TTAACGTAAAACTGTAAGAATTGATGTAAAAGCTTGTAAAGG
* *
2699712 TGGAATAACTAAATTTTAAATCTTAACGTAAGCGTGTGAGAGTTAACGTAAGAAGTTAATTAAGT
65 TGGAATAACTAAATTTTAAATCTTAACGTAAGCGTGTGAGAGTTAACGTAACAAGTCAATTAAGT
* *
2699777 AAAAATAATATAAATTTAATTAAAAGTAAATATTTAAATTTATATTCTTGGGCTGAAAGTGTTTA
130 AAAAATAATGTAAATTTAATAAAAAGTAAATATTTAAATTTATATTCTTGGGCTGAAAGTGTTTA
* *
2699842 ATGATATAAAGATTTTAATTTTTAAATAAATGATAACAAGGATAAAACTAATTATAATTCAAAAT
195 ACGATATAAAAATTTTAA-TTTT---TAAAT--T-A-AAGGAT--AACTAATTATAATTCAAAAT
* * **********
2699907 TGACATGAAAAAGCCTTAACATAAAACTGTAAGAATTGACGTAANNNNNNNNNNAGGTGAAATAA
250 TGACGTGAAAAAACCTTAACATAAAACTGTAAGAATTGACGTAAAAGCTTGTAAAGGT-AAATAA
* * *** * *
2699972 CTAAATTTTAAATTTTAACATAAATATGTGAGAGTTAACATAACAAGTCAATTAAGT-AAAAAAA
314 CTAAATTTTAAATCTTAACGTAAGCGTGTGACAGTTAACGTAACAAGTCAATTAAGTAAAAAAAA
* * * ********* *
2700036 TTTAATTTTATTGAAAA--AAATATTTAAATTTATATTNNNNNNNNNNAAGTATTTAACGATATA
379 TATAAATTTAATGAAAAGTAAATATTTAAATTTATATT-CTTGACTGAAAGTGTTTAACGATATA
* * * * * * * *
2700099 TAAATTTGAATTTTTAAATAAAAATAATAAGGGTAAAAATAATTATAGTTTAAAATTAACAT-AG
443 AAAATTTTAA-TTTT---T--AAATAA-AA--G-ATAACTAATTATAATTCAAAATTGACGTGA-
* ** * * *
2700163 ATAAGTCTTAACGTAAAACTGTAAGAATTGACGTAAAAACTTAT-AAAGTTGGAATAACTAAATT
497 AAAAACCTTGACGTAAAACTGTAAGAATTGACGTAAAAGCTTGTAAAAG-TGGAATAACTAAATT
* * * * * * ** *
2700227 TTAAATCTTAATGTAAATGTGTGAAAGTTAACGTAATAAGTTAATTAAGTAAAAAAAACCTAATT
561 TTAAATCTTAACGTAAACGTGTGAGAGTTAACGTAACAAGTCAATTAAGTAAAAACAATGTAAAT
* * * * * * * *
2700292 TTAGTGAAAAATAAATATTTATATTTATAT--TATTGAGCTAAAAGTATGTAACGATATATAAAT
626 TTAATGAAAAGTAAATATTTAAATTTATATCCT-TTGAGCTGAAAGTGTTTAACGAAATAAAAAT
*
2700355 TTTAATTTTTAAATAAA
690 TTT-ATTTTTCAATAAA
2700372 AATAATAAAA
Statistics
Matches: 1821, Mismatches: 301, Indels: 77
0.83 0.14 0.04
Matches are distributed among these distances:
720 6 0.00
721 206 0.11
722 265 0.15
723 356 0.20
724 587 0.32
725 18 0.01
726 3 0.00
728 1 0.00
729 42 0.02
730 10 0.01
731 21 0.01
732 108 0.06
733 1 0.00
735 3 0.00
736 1 0.00
737 2 0.00
738 3 0.00
739 139 0.08
740 39 0.02
741 10 0.01
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.32
Consensus pattern (721 bp):
TTCAAAATTGACGTGAAAAACTTTAACGTAAAACTGTAAGAATTGATGTAAAAGCTTGTAAAGGT
GGAATAACTAAATTTTAAATCTTAACGTAAGCGTGTGAGAGTTAACGTAACAAGTCAATTAAGTA
AAAATAATGTAAATTTAATAAAAAGTAAATATTTAAATTTATATTCTTGGGCTGAAAGTGTTTAA
CGATATAAAAATTTTAATTTTTAAATTAAAGGATAACTAATTATAATTCAAAATTGACGTGAAAA
AACCTTAACATAAAACTGTAAGAATTGACGTAAAAGCTTGTAAAGGTAAATAACTAAATTTTAAA
TCTTAACGTAAGCGTGTGACAGTTAACGTAACAAGTCAATTAAGTAAAAAAAATATAAATTTAAT
GAAAAGTAAATATTTAAATTTATATTCTTGACTGAAAGTGTTTAACGATATAAAAATTTTAATTT
TTAAATAAAAGATAACTAATTATAATTCAAAATTGACGTGAAAAAACCTTGACGTAAAACTGTAA
GAATTGACGTAAAAGCTTGTAAAAGTGGAATAACTAAATTTTAAATCTTAACGTAAACGTGTGAG
AGTTAACGTAACAAGTCAATTAAGTAAAAACAATGTAAATTTAATGAAAAGTAAATATTTAAATT
TATATCCTTTGAGCTGAAAGTGTTTAACGAAATAAAAATTTTATTTTTCAATAAAGGATAACTAA
TTATAA
Found at i:2705366 original size:16 final size:16
Alignment explanation
Indices: 2705347--2705380 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
2705337 AATACTGTCC
2705347 AACATAACAAAAGACA
1 AACATAACAAAAGACA
* *
2705363 AACATAATAAAAGCCA
1 AACATAACAAAAGACA
2705379 AA
1 AA
2705381 ATATTGTTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.68, C:0.18, G:0.06, T:0.09
Consensus pattern (16 bp):
AACATAACAAAAGACA
Found at i:2711423 original size:6 final size:7
Alignment explanation
Indices: 2711397--2711428 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
2711387 ATGGCCCTTT
2711397 CAAAAATC
1 CAAAAA-C
2711405 CAAAAAC
1 CAAAAAC
2711412 CAAAAAC
1 CAAAAAC
2711419 CAAAAAC
1 CAAAAAC
2711426 CAA
1 CAA
2711429 GTAACTAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.69, C:0.28, G:0.00, T:0.03
Consensus pattern (7 bp):
CAAAAAC
Found at i:2713181 original size:13 final size:13
Alignment explanation
Indices: 2713163--2713187 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2713153 AATCAAAGAT
2713163 AAATTTTAAAAAA
1 AAATTTTAAAAAA
2713176 AAATTTTAAAAA
1 AAATTTTAAAAA
2713188 TATTTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
AAATTTTAAAAAA
Found at i:2713276 original size:21 final size:22
Alignment explanation
Indices: 2713250--2713298 Score: 91
Period size: 21 Copynumber: 2.3 Consensus size: 22
2713240 TGAGGAGTTT
2713250 TTTTTAAATATAAAAAAA-TTA
1 TTTTTAAATATAAAAAAATTTA
2713271 TTTTTAAATATAAAAAAATTTA
1 TTTTTAAATATAAAAAAATTTA
2713293 TTTTTA
1 TTTTTA
2713299 TTTTAAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 18 0.67
22 9 0.33
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
TTTTTAAATATAAAAAAATTTA
Found at i:2713308 original size:19 final size:19
Alignment explanation
Indices: 2713284--2713328 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
2713274 TTAAATATAA
* * *
2713284 AAAAATTTATTTTTATTTT
1 AAAAATATATTTATATGTT
*
2713303 AAAAATATCTTTATATGTT
1 AAAAATATATTTATATGTT
2713322 AAAAATA
1 AAAAATA
2713329 ACTATAATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (19 bp):
AAAAATATATTTATATGTT
Found at i:2713484 original size:80 final size:81
Alignment explanation
Indices: 2713398--2713563 Score: 235
Period size: 81 Copynumber: 2.1 Consensus size: 81
2713388 AAAAGAGTTT
** * *
2713398 ATAAAAAAAA-TTTATCAAACAACTTCAGTTTAATTATAAAAGTTATTATTTTTTATAAAAACTT
1 ATAAAAAAAACTAAATCAAACAACTTAAATTTAATTATAAAAGTTATTATTTTTTATAAAAACTT
2713462 CATAATAACTTTTAAA
66 CATAATAACTTTTAAA
* * *
2713478 TTAAAAAAAACTAAATCAAACAACTTAAATTTAATTTTAAAAGTTATTATTTTTTATAAAAATTT
1 ATAAAAAAAACTAAATCAAACAACTTAAATTTAATTATAAAAGTTATTATTTTTTATAAAAACTT
* * *
2713543 TATACTAATTTTTAAA
66 CATAATAACTTTTAAA
2713559 ATAAA
1 ATAAA
2713564 TTAAGTAATT
Statistics
Matches: 74, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
80 9 0.12
81 65 0.88
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.41
Consensus pattern (81 bp):
ATAAAAAAAACTAAATCAAACAACTTAAATTTAATTATAAAAGTTATTATTTTTTATAAAAACTT
CATAATAACTTTTAAA
Found at i:2715190 original size:2 final size:2
Alignment explanation
Indices: 2715183--2715209 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
2715173 TCTGTATTGT
2715183 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
2715210 TTGTTGCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:2715531 original size:12 final size:12
Alignment explanation
Indices: 2715514--2715538 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2715504 ACATGCTTAT
2715514 TAGTCGCTCATG
1 TAGTCGCTCATG
2715526 TAGTCGCTCATG
1 TAGTCGCTCATG
2715538 T
1 T
2715539 TGTCTTGACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (12 bp):
TAGTCGCTCATG
Found at i:2716655 original size:17 final size:18
Alignment explanation
Indices: 2716625--2716658 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
2716615 AGTGTGTTTC
*
2716625 AAAAAGAATTAAGAAAAA
1 AAAAAGAATAAAGAAAAA
2716643 AAAAAGAA-AAAGAAAA
1 AAAAAGAATAAAGAAAA
2716659 GCAATGGCAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (18 bp):
AAAAAGAATAAAGAAAAA
Found at i:2720586 original size:32 final size:32
Alignment explanation
Indices: 2720545--2720605 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
2720535 GAATCTCTTA
2720545 TACTCTCTCTAAAGTTACTTAAATGGATTTTC
1 TACTCTCTCTAAAGTTACTTAAATGGATTTTC
2720577 TACTCTCTCTAAAGTTACTTAAATGGATT
1 TACTCTCTCTAAAGTTACTTAAATGGATT
2720606 GAGTTACTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.30, C:0.18, G:0.10, T:0.43
Consensus pattern (32 bp):
TACTCTCTCTAAAGTTACTTAAATGGATTTTC
Found at i:2722924 original size:105 final size:105
Alignment explanation
Indices: 2722742--2723140 Score: 600
Period size: 105 Copynumber: 3.8 Consensus size: 105
2722732 GCAGTAGAGC
* * * *
2722742 GGTAGATTGGCCAACCTTCCCACTAGTCATATAAACTGTTCTTGTACACTCTTGATATTTTTTTG
1 GGTAGATGGGCTAACCTTCCCACTAGTCATATAAACTGTCCTTGTACACTCTTGATATTATTTTG
* *
2722807 TTTTTCACTGCATACCTTTGTTGTAAATACTATGAACTGT
66 TTCTTCACTGCATATCTTTGTTGTAAATACTATGAACTGT
* * *
2722847 GGTAGATGGGCTAACCTTCCCACTAGTCATGTAAACCGTCCTTGTACACTCTTGATGTTATTTTG
1 GGTAGATGGGCTAACCTTCCCACTAGTCATATAAACTGTCCTTGTACACTCTTGATATTATTTTG
2722912 TTCTTCACTGCATATCTTTGTTGTAAATACTATGAACTGT
66 TTCTTCACTGCATATCTTTGTTGTAAATACTATGAACTGT
* * * * * * *
2722952 GGCAGACGGGCTAACCTTCCCAGTAGTCATGTAAACTGTCATTGTACACTCTTGATACTAATTTG
1 GGTAGATGGGCTAACCTTCCCACTAGTCATATAAACTGTCCTTGTACACTCTTGATATTATTTTG
* *
2723017 TTCTTCACTGCATATCTTTGTTGTAAATACCATAAACTGT
66 TTCTTCACTGCATATCTTTGTTGTAAATACTATGAACTGT
* *
2723057 GGTAGATGGGCTAACCTTCCCACTAGTCATATAAACTGCCCTTGTACACTCTTGGATGTTATTTT
1 GGTAGATGGGCTAACCTTCCCACTAGTCATATAAACTGTCCTTGTACACTCTT-GATATTATTTT
*
2723122 GTTCTTGACTGCATATCTT
65 GTTCTTCACTGCATATCTT
2723141 CGTTTCATGA
Statistics
Matches: 264, Mismatches: 29, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
105 238 0.90
106 26 0.10
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (105 bp):
GGTAGATGGGCTAACCTTCCCACTAGTCATATAAACTGTCCTTGTACACTCTTGATATTATTTTG
TTCTTCACTGCATATCTTTGTTGTAAATACTATGAACTGT
Found at i:2731446 original size:349 final size:351
Alignment explanation
Indices: 2730724--2731777 Score: 1648
Period size: 349 Copynumber: 3.0 Consensus size: 351
2730714 AAAGAATTGT
* * * *
2730724 AACGATTATCTTTCAGGATTTAATATACCTTTCCTTAATAGTTTGCACAAACTATTAAGGGATGG
1 AACGATTATCTTTCAGGATTCAATAAACCCTTCCTTAATAGTTTGCACAAACTATTAAGGGATGA
* * ** *
2730789 CAAGAATAGCAGAAATAGAGAAAGAATCCAGCTATTGAAGGGAAGAGGTGAAGAAGATAATCAAA
66 CAGGAATAGCAGAAACAGAGAAAGAATCCAGCTATTGAAGAAAAGAGGTGAAGAAGATAAGCAAA
* *
2730854 GAAAGCTCAGAAGGTGAAAGGCTTTGGTGTGTGTTGAGAGTGAATGTGTGAAGCTATATTTATAG
131 GAAAGCTCAGAAGGTGAAAGGCTTTGGTGTGTGTTGAGAGTGAAGGTGTGAGGCTATATTTATAG
2730919 GCATGGAGTGAGGTGAACGTTGCACCAAATAAGGTGAACATTGAACTAGATTA-AGGAGTTGAGA
196 GCATGGAGTGAGGTGAACGTTGCACCAAATAAGGTGAACATTGAACTAGATTAGA-GAGTTGAGA
* * * *
2730983 AAAAAACTCAGGGAGTTAGAGAAAAACCTGGTCAACTTGTGTACTGAGTCAGGTATTCATTGTAG
260 AAAAGACTCAGGGAGTTAGAGAAAAACCTGGTCAGCTTGTATACTGAGTCAGGTATTCGTTGTAG
2731048 GCTTTGGTCAA-ATAAACGTTGGAGCAA
325 GCTTTGGT-AAGATAAACGTTGGAGCAA
* * *
2731075 AACAATTATCTTTCAGGATTCAATAGACCCTTCCTTAATAGTTTACACAAACTATTAAGGGATGA
1 AACGATTATCTTTCAGGATTCAATAAACCCTTCCTTAATAGTTTGCACAAACTATTAAGGGATGA
2731140 CAGGAATAGCAGAAACAGAGAAAGAATCCAGCTATTGAAGAAAAGAGGTGAAGAAGATAAGCAAA
66 CAGGAATAGCAGAAACAGAGAAAGAATCCAGCTATTGAAGAAAAGAGGTGAAGAAGATAAGCAAA
* * *
2731205 GAAAGCTTAAAAGGTGAAAGGCTTTGGTGTGTGTTGAGAGTGAAGGTGTGAGGCTA-A-ATATAG
131 GAAAGCTCAGAAGGTGAAAGGCTTTGGTGTGTGTTGAGAGTGAAGGTGTGAGGCTATATTTATAG
* * *
2731268 GCATGAAGTGGGGTGAACGTTGCACCAAATAAGGTGAATATTGAACTAGATTAGAGAGTTGAGAA
196 GCATGGAGTGAGGTGAACGTTGCACCAAATAAGGTGAACATTGAACTAGATTAGAGAGTTGAGAA
* * *
2731333 AAAGACTCAAGGAGTTAGAGAAAAACCTGGTCAGCTTGTATATTGAGTCAAGTATTCGTTGTAGG
261 AAAGACTCAGGGAGTTAGAGAAAAACCTGGTCAGCTTGTATACTGAGTCAGGTATTCGTTGTAGG
*
2731398 CTTTGGTAAGATAAACATTGGAGCAA
326 CTTTGGTAAGATAAACGTTGGAGCAA
* * * *
2731424 AACGATTATCTTCCAAGATTCAACAAACCCTTCCTTAATAGTTTGCACAAACTATTAAGAGATGA
1 AACGATTATCTTTCAGGATTCAATAAACCCTTCCTTAATAGTTTGCACAAACTATTAAGGGATGA
2731489 CAGGAATAGCAGAAACAGAGAAAGAATCCAGCTATTGAAGAAAAGAGGTGAAGAAGATAAGCAAA
66 CAGGAATAGCAGAAACAGAGAAAGAATCCAGCTATTGAAGAAAAGAGGTGAAGAAGATAAGCAAA
* *
2731554 GAAAGCTCAGAAGGTGAAAGACTTTGGTGTGTATTGAGAGTGAAGGTGTGAGGCTATATTTATAG
131 GAAAGCTCAGAAGGTGAAAGGCTTTGGTGTGTGTTGAGAGTGAAGGTGTGAGGCTATATTTATAG
* * * * * * *
2731619 GCATGGAGTGAGGTGAACATTACATCAAATAAGGTAAACGTTAAACTAGATTAGGGAGTTGAGAA
196 GCATGGAGTGAGGTGAACGTTGCACCAAATAAGGTGAACATTGAACTAGATTAGAGAGTTGAGAA
* * *
2731684 AAAGACTTAGGGAGTTAAAGAAAAACCTGGTCAGCTTGTATACTAAGTCAGGTATTCGTTGTAGG
261 AAAGACTCAGGGAGTTAGAGAAAAACCTGGTCAGCTTGTATACTGAGTCAGGTATTCGTTGTAGG
* *
2731749 CTTCGGTCAGATAAACGTTGGAGCAA
326 CTTTGGTAAGATAAACGTTGGAGCAA
2731775 AAC
1 AAC
2731778 CAGGTAAGCT
Statistics
Matches: 641, Mismatches: 58, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
348 2 0.00
349 320 0.50
350 3 0.00
351 316 0.49
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.25
Consensus pattern (351 bp):
AACGATTATCTTTCAGGATTCAATAAACCCTTCCTTAATAGTTTGCACAAACTATTAAGGGATGA
CAGGAATAGCAGAAACAGAGAAAGAATCCAGCTATTGAAGAAAAGAGGTGAAGAAGATAAGCAAA
GAAAGCTCAGAAGGTGAAAGGCTTTGGTGTGTGTTGAGAGTGAAGGTGTGAGGCTATATTTATAG
GCATGGAGTGAGGTGAACGTTGCACCAAATAAGGTGAACATTGAACTAGATTAGAGAGTTGAGAA
AAAGACTCAGGGAGTTAGAGAAAAACCTGGTCAGCTTGTATACTGAGTCAGGTATTCGTTGTAGG
CTTTGGTAAGATAAACGTTGGAGCAA
Found at i:2737081 original size:43 final size:43
Alignment explanation
Indices: 2737020--2737105 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
2737010 ACTCAGGGAG
2737020 TTAGAGAAAAACCTGGTCAGCTTATATACTAAGTCAACTTAAA
1 TTAGAGAAAAACCTGGTCAGCTTATATACTAAGTCAACTTAAA
*
2737063 TTAGAGAAAAACCTGGTCAGCTTATATATTAAGTCAACTTAAA
1 TTAGAGAAAAACCTGGTCAGCTTATATACTAAGTCAACTTAAA
2737106 AAAAAAGAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (43 bp):
TTAGAGAAAAACCTGGTCAGCTTATATACTAAGTCAACTTAAA
Found at i:2744886 original size:21 final size:21
Alignment explanation
Indices: 2744860--2744899 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
2744850 ATAATAAAAA
*
2744860 CTTCCACAGTTTTTCTTTGAT
1 CTTCCAAAGTTTTTCTTTGAT
2744881 CTTCCAAAGTTTTTCTTTG
1 CTTCCAAAGTTTTTCTTTG
2744900 CTTTCTTGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.15, C:0.23, G:0.10, T:0.53
Consensus pattern (21 bp):
CTTCCAAAGTTTTTCTTTGAT
Found at i:2744993 original size:22 final size:21
Alignment explanation
Indices: 2744941--2744994 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
2744931 CAAAAAAACT
* *
2744941 TAGCTTAAATGTGCCTTTCAA
1 TAGCTTAAAAGTGCCTTTAAA
*
2744962 TTGCTCTAAAAGTGCCTTTAAA
1 TAGCT-TAAAAGTGCCTTTAAA
2744984 TAAGCTTAAAA
1 T-AGCTTAAAA
2744995 AACCTACTCG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 4 0.15
22 20 0.74
23 3 0.11
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (21 bp):
TAGCTTAAAAGTGCCTTTAAA
Found at i:2751537 original size:2 final size:2
Alignment explanation
Indices: 2751530--2751554 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2751520 CACAATATTT
2751530 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
2751555 TATATATTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:2751884 original size:19 final size:22
Alignment explanation
Indices: 2751860--2751906 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
2751850 AACTTGGTAT
2751860 AAACCATGC-C-TTTAG-TTTG
1 AAACCATGCACTTTTAGCTTTG
2751879 AAACCATGCACTTTTAGCTTTG
1 AAACCATGCACTTTTAGCTTTG
2751901 AAACCA
1 AAACCA
2751907 AATACATGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 9 0.36
20 1 0.04
21 5 0.20
22 10 0.40
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (22 bp):
AAACCATGCACTTTTAGCTTTG
Found at i:2766819 original size:2 final size:2
Alignment explanation
Indices: 2766812--2766841 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
2766802 GTAGTGAATA
2766812 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
2766842 AATATTGTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:2772958 original size:2 final size:2
Alignment explanation
Indices: 2772951--2772979 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
2772941 TATGTATGTG
2772951 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2772980 TCCACTTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2776207 original size:17 final size:17
Alignment explanation
Indices: 2776185--2776218 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
2776175 TATTAATATT
*
2776185 TAATATTTTAATTATAA
1 TAATATTTAAATTATAA
2776202 TAATATTTAAATTATAA
1 TAATATTTAAATTATAA
2776219 ATTCAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TAATATTTAAATTATAA
Found at i:2776221 original size:24 final size:22
Alignment explanation
Indices: 2776171--2776248 Score: 70
Period size: 22 Copynumber: 3.5 Consensus size: 22
2776161 TAAAAATAAA
2776171 AAATTATTAATATTTAATATTT
1 AAATTATTAATATTTAATATTT
*
2776193 TAATTATAATAATATTTAA-ATTAT
1 AAATTAT--TAATATTTAATATT-T
* * *
2776217 AAATTCA-AAATTTTTAATTTTT
1 AAATT-ATTAATATTTAATATTT
2776239 AAATTATTAA
1 AAATTATTAA
2776249 GTGAAAATAT
Statistics
Matches: 44, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
21 1 0.02
22 22 0.50
23 5 0.11
24 15 0.34
25 1 0.02
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (22 bp):
AAATTATTAATATTTAATATTT
Found at i:2789046 original size:32 final size:32
Alignment explanation
Indices: 2789005--2789070 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
2788995 TTGAAGACAG
2789005 TGCTTTTGTTGTGGAATGTATAGAGTCTGTAA
1 TGCTTTTGTTGTGGAATGTATAGAGTCTGTAA
*
2789037 TGCTTTTGTTGTGGAATGTGTAGAGTCTGTAA
1 TGCTTTTGTTGTGGAATGTATAGAGTCTGTAA
2789069 TG
1 TG
2789071 AATGTCTTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.20, C:0.06, G:0.30, T:0.44
Consensus pattern (32 bp):
TGCTTTTGTTGTGGAATGTATAGAGTCTGTAA
Found at i:2800235 original size:92 final size:92
Alignment explanation
Indices: 2800073--2800247 Score: 224
Period size: 92 Copynumber: 1.9 Consensus size: 92
2800063 TGTGAAACAT
** * ** *
2800073 TATCCTTAAGAAGACCGGGTAAAATGAAGGTTACAAAATATTCTAAAAGACATAGTAAAAGGACT
1 TATCCTTAAGAAGACAAGGTAAAAAGAACATTACAAAATATTCTAAAAAACATAGTAAAAGGACT
2800138 AAGTCTAATTCAATCAAAGACTAATTC
66 AAGTCTAATTCAATCAAAGACTAATTC
* * * * * *
2800165 TATCCTTAAGAATACAAGGTAAAAAGAACATTACAGAATATTCTAAAAAACTTGGTAAAATGATT
1 TATCCTTAAGAAGACAAGGTAAAAAGAACATTACAAAATATTCTAAAAAACATAGTAAAAGGACT
* *
2800230 GAGTCTGATTCAATCAAA
66 AAGTCTAATTCAATCAAA
2800248 TCTGAAATGG
Statistics
Matches: 69, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
92 69 1.00
ACGTcount: A:0.46, C:0.13, G:0.14, T:0.26
Consensus pattern (92 bp):
TATCCTTAAGAAGACAAGGTAAAAAGAACATTACAAAATATTCTAAAAAACATAGTAAAAGGACT
AAGTCTAATTCAATCAAAGACTAATTC
Found at i:2800657 original size:38 final size:41
Alignment explanation
Indices: 2800584--2800659 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
2800574 CTTAAGTGTA
*
2800584 TAATAACTTTTTTTTTTCAACATGACATGTAATAACTTTTT
1 TAATAACCTTTTTTTTTCAACATGACATGTAATAACTTTTT
2800625 TAATAACCTTTTTTTTTCAACAT-A-ATGT-ATAACTT
1 TAATAACCTTTTTTTTTCAACATGACATGTAATAACTT
2800660 GGTCTCTATT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
38 7 0.21
39 4 0.12
40 1 0.03
41 22 0.65
ACGTcount: A:0.33, C:0.13, G:0.04, T:0.50
Consensus pattern (41 bp):
TAATAACCTTTTTTTTTCAACATGACATGTAATAACTTTTT
Found at i:2801392 original size:26 final size:26
Alignment explanation
Indices: 2801346--2801395 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
2801336 GTATAAAACA
**
2801346 TATTACACGTTATGGTTAAAAAAAGT
1 TATTACACGCCATGGTTAAAAAAAGT
2801372 TATTACACGCCAT-GTTGAAAAAAA
1 TATTACACGCCATGGTT-AAAAAAA
2801396 AATATTATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 3 0.14
26 18 0.86
ACGTcount: A:0.44, C:0.12, G:0.14, T:0.30
Consensus pattern (26 bp):
TATTACACGCCATGGTTAAAAAAAGT
Found at i:2801401 original size:26 final size:26
Alignment explanation
Indices: 2801340--2801402 Score: 65
Period size: 26 Copynumber: 2.4 Consensus size: 26
2801330 CGTCATGTAT
* **
2801340 AAAACATATTACACGTTATGGTTAAA
1 AAAAAATATTACACGCCATGGTTAAA
**
2801366 AAAAGTTATTACACGCCAT-GTTGAAA
1 AAAAAATATTACACGCCATGGTT-AAA
2801392 AAAAAATATTA
1 AAAAAATATTA
2801403 TTGTTACACG
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
25 3 0.10
26 27 0.90
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.29
Consensus pattern (26 bp):
AAAAAATATTACACGCCATGGTTAAA
Found at i:2801477 original size:52 final size:53
Alignment explanation
Indices: 2801372--2801479 Score: 137
Period size: 52 Copynumber: 2.0 Consensus size: 53
2801362 TAAAAAAAGT
** *
2801372 TATTACACGCCATGTTGAAAAAAAAATATTATTGTTACACGTCATGTACAAAACA
1 TATTACACGCCATGTTG--AAAAAAATATTATTGTTACACGTCATACAAAAAACA
* * *
2801427 TATTCCACGCCATGTTG-AAAAAATATTGTTGTTACATGTCATACAAAAAACA
1 TATTACACGCCATGTTGAAAAAAATATTATTGTTACACGTCATACAAAAAACA
2801479 T
1 T
2801480 TTTGTTATAC
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
52 31 0.66
55 16 0.34
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.31
Consensus pattern (53 bp):
TATTACACGCCATGTTGAAAAAAATATTATTGTTACACGTCATACAAAAAACA
Found at i:2803978 original size:16 final size:16
Alignment explanation
Indices: 2803957--2804017 Score: 50
Period size: 16 Copynumber: 3.8 Consensus size: 16
2803947 GAAATTTACT
2803957 TGAATTCAAAATAATA
1 TGAATTCAAAATAATA
** * *
2803973 TGAATTTTAAATGATT
1 TGAATTCAAAATAATA
* * *
2803989 TAAATTTAAAATAATC
1 TGAATTCAAAATAATA
2804005 TGAATTCGAAAAT
1 TGAATTC-AAAAT
2804018 GTATGAAATA
Statistics
Matches: 34, Mismatches: 10, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
16 29 0.85
17 5 0.15
ACGTcount: A:0.49, C:0.05, G:0.08, T:0.38
Consensus pattern (16 bp):
TGAATTCAAAATAATA
Found at i:2817397 original size:3 final size:3
Alignment explanation
Indices: 2817391--2817415 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
2817381 TTTTGTTGTC
2817391 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
2817416 TCAAGAGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:2823486 original size:5 final size:5
Alignment explanation
Indices: 2823453--2823484 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
2823443 GAAAAGCCCT
2823453 TTTTC TTTTC TTTTC TTTTC TTTT- TTTT- TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
2823485 TTGGTATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 8 0.30
5 19 0.70
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (5 bp):
TTTTC
Found at i:2824865 original size:155 final size:154
Alignment explanation
Indices: 2824518--2824979 Score: 707
Period size: 154 Copynumber: 3.0 Consensus size: 154
2824508 CCATAATGAA
* *
2824518 TTGCCATATTGTTTGATGGACACCAAAGTACAAAAGCATAAAAAGGTAAAATTGGAACTTCACTC
1 TTGCCAAATTGTTTGATGGACACCAAAGTACATAAGCATAAAAAGGTAAAATTGGAACTTCACTC
* * ** * *
2824583 TCCCCTTGTTCTTACTTGTCATATG-CAAATTTTCAATCCTTTTTTTGAAAACGTTCT-TTGTCA
66 TCTCTTTGTTCTTACTTGTCATATGTC-AATTTTCAATATTTTTTTTGGAAACTTTCTCTT-TCA
2824646 TAATTAATAAATTTAATTAATTAATC
129 TAATTAATAAATTTAATTAATTAATC
*
2824672 TTGCCAAATTGTTTGATGTACACCAAAGTACATAAGCATAAAAAGGTAAAATTGGAACTTCACTC
1 TTGCCAAATTGTTTGATGGACACCAAAGTACATAAGCATAAAAAGGTAAAATTGGAACTTCACTC
* *
2824737 TCTCTTTGTTCTTACTTGCCATATGTCAATTTTCAATTTTTTTTTTTGGAAACTTTCTCTTTCAT
66 TCTCTTTGTTCTTACTTGTCATATGTCAATTTTCAA-TATTTTTTTTGGAAACTTTCTCTTTCAT
*
2824802 AATTAATAAATTTAATCAATTAATC
130 AATTAATAAATTTAATTAATTAATC
* * *
2824827 TTGTCAGATTGTTTGATGGACACCAAAGTACATAAGCATAAAAAGGCAAAATTGGAACTTCACTC
1 TTGCCAAATTGTTTGATGGACACCAAAGTACATAAGCATAAAAAGGTAAAATTGGAACTTCACTC
*
2824892 TATCTTTGTTCTTAACTTGTCATATGTCAATTTTCAA-ATTTTTTTT-GAGAACTTTCTCTTTCA
66 TCTCTTTGTTCTT-ACTTGTCATATGTCAATTTTCAATATTTTTTTTGGA-AACTTTCTCTTTCA
2824955 TAATTAATAAATTTAATTAATTAAT
129 TAATTAATAAATTTAATTAATTAAT
2824980 TTTAAAAAGT
Statistics
Matches: 284, Mismatches: 19, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
153 2 0.01
154 139 0.49
155 119 0.42
156 24 0.08
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.40
Consensus pattern (154 bp):
TTGCCAAATTGTTTGATGGACACCAAAGTACATAAGCATAAAAAGGTAAAATTGGAACTTCACTC
TCTCTTTGTTCTTACTTGTCATATGTCAATTTTCAATATTTTTTTTGGAAACTTTCTCTTTCATA
ATTAATAAATTTAATTAATTAATC
Found at i:2851352 original size:24 final size:23
Alignment explanation
Indices: 2851316--2851361 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
2851306 ATGGAAGATT
*
2851316 ATGCTAACTATTTTAATGCTTTGC
1 ATGCTAACTATTTCAA-GCTTTGC
2851340 ATGCTAA-TAATTTCAAGCTTTG
1 ATGCTAACT-ATTTCAAGCTTTG
2851362 ATTCTTTTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.43
Consensus pattern (23 bp):
ATGCTAACTATTTCAAGCTTTGC
Found at i:2851814 original size:40 final size:38
Alignment explanation
Indices: 2851701--2851815 Score: 108
Period size: 40 Copynumber: 2.9 Consensus size: 38
2851691 TGAATCTACT
* *
2851701 ATCAACTACCTTTTTCAACTAAGTTCATGCATAACGTTCACA
1 ATCAACTACC-TTTTCAAC---GTTCAAGCATAACTTTCACA
* * *
2851743 ATCAACTACCTTTT-AAGGATCAAGCACAACTTATCACAA
1 ATCAACTACCTTTTCAACGTTCAAGCATAACTT-TCAC-A
2851782 ATTC-ACTACCTTTTCAACGTTCAAGCATAACTTT
1 A-TCAACTACCTTTTCAACGTTCAAGCATAACTTT
2851816 TTTACCTTTT
Statistics
Matches: 61, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
37 11 0.18
38 4 0.07
39 13 0.21
40 19 0.31
41 4 0.07
42 10 0.16
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.32
Consensus pattern (38 bp):
ATCAACTACCTTTTCAACGTTCAAGCATAACTTTCACA
Found at i:2852831 original size:21 final size:20
Alignment explanation
Indices: 2852807--2852849 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
2852797 ACTTTCTATT
2852807 TTTCAAGAA-TCGATGCTTGAC
1 TTTCAA-AAGTCGATGCTT-AC
*
2852828 TTTCAAAAGTCGATTCTTAC
1 TTTCAAAAGTCGATGCTTAC
2852848 TT
1 TT
2852850 GTTGGAACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.40
Consensus pattern (20 bp):
TTTCAAAAGTCGATGCTTAC
Found at i:2867806 original size:30 final size:30
Alignment explanation
Indices: 2867747--2867807 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
2867737 TAAGTCCTTG
* **
2867747 TATTTTTAGTTTGAATCAAATGAGTTCTTA
1 TATTTTTAGTTTGAATCAAATAAACTCTTA
*
2867777 TATTTTTATTTTGAATCAAATAAACTCTTA
1 TATTTTTAGTTTGAATCAAATAAACTCTTA
2867807 T
1 T
2867808 TAATAATGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.08, G:0.08, T:0.51
Consensus pattern (30 bp):
TATTTTTAGTTTGAATCAAATAAACTCTTA
Found at i:2875828 original size:6 final size:6
Alignment explanation
Indices: 2875817--2875851 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
2875807 CTAAGAATAT
2875817 ATATAA ATATAA ATATAA ATATAA ATATAA ATATA
1 ATATAA ATATAA ATATAA ATATAA ATATAA ATATA
2875852 TAAATGTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
ATATAA
Found at i:2875865 original size:12 final size:12
Alignment explanation
Indices: 2875813--2875853 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
2875803 CTAACTAAGA
2875813 ATATATATAAAT
1 ATATATATAAAT
*
2875825 ATAAATATAAAT
1 ATATATATAAAT
*
2875837 ATAAATATAAAT
1 ATATATATAAAT
2875849 ATATA
1 ATATA
2875854 AATGTATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
ATATATATAAAT
Found at i:2880206 original size:12 final size:12
Alignment explanation
Indices: 2880185--2880214 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
2880175 CTTTGACAAA
2880185 ATAATAATAATT
1 ATAATAATAATT
*
2880197 ATAATTATAATT
1 ATAATAATAATT
2880209 ATAATA
1 ATAATA
2880215 TTAAAGAAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
ATAATAATAATT
Found at i:2882243 original size:10 final size:10
Alignment explanation
Indices: 2882225--2882258 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
2882215 AACAACACAG
*
2882225 GCCATGCCAT
1 GCCAAGCCAT
*
2882235 GCCAAGCCAA
1 GCCAAGCCAT
2882245 GCCAAGCCAT
1 GCCAAGCCAT
2882255 GCCA
1 GCCA
2882259 TGCCCACGGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.29, C:0.41, G:0.21, T:0.09
Consensus pattern (10 bp):
GCCAAGCCAT
Found at i:2886777 original size:21 final size:21
Alignment explanation
Indices: 2886739--2886780 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
2886729 ATTCTAGGTT
**
2886739 TCAAGTATTTATACTTGTTCA
1 TCAAGTATCAATACTTGTTCA
*
2886760 TCAAGTATCAATATTTGTTCA
1 TCAAGTATCAATACTTGTTCA
2886781 GTGGGAATCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.31, C:0.14, G:0.10, T:0.45
Consensus pattern (21 bp):
TCAAGTATCAATACTTGTTCA
Found at i:2890646 original size:17 final size:17
Alignment explanation
Indices: 2890609--2890647 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
2890599 AATACTTATT
* *
2890609 TTGTTGGATTCCTTGTT
1 TTGTTGGATTCCATGTG
*
2890626 TTGTTGGATTTCATGTG
1 TTGTTGGATTCCATGTG
2890643 TTGTT
1 TTGTT
2890648 AATGAGATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.08, C:0.08, G:0.26, T:0.59
Consensus pattern (17 bp):
TTGTTGGATTCCATGTG
Found at i:2893763 original size:24 final size:24
Alignment explanation
Indices: 2893736--2893782 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
2893726 ATAGTAGTAA
2893736 TAATAAAAATAAAAAATAATTTTT
1 TAATAAAAATAAAAAATAATTTTT
*** *
2893760 TAATTTTAATAGAAAATAATTTT
1 TAATAAAAATAAAAAATAATTTT
2893783 CAATTAAATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (24 bp):
TAATAAAAATAAAAAATAATTTTT
Found at i:2893849 original size:17 final size:17
Alignment explanation
Indices: 2893829--2893862 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
2893819 GTCAAAGTCA
2893829 AACACTCAATAAAGTTG
1 AACACTCAATAAAGTTG
**
2893846 AACACTTGATAAAGTTG
1 AACACTCAATAAAGTTG
2893863 GTTTATACTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (17 bp):
AACACTCAATAAAGTTG
Found at i:2897871 original size:33 final size:32
Alignment explanation
Indices: 2897829--2897904 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 32
2897819 GGTGATTTTT
* *
2897829 TGCCTGCCCCAACACCAAGTTATCAACTTTAA
1 TGCCTGCCCCAACACCAAGTTAGCAACTATAA
*
2897861 TGCCTCGCCCCCACACCAAGTTAGCAACTATAA
1 TGCCT-GCCCCAACACCAAGTTAGCAACTATAA
*
2897894 TACCTTGCCCC
1 TGCC-TGCCCC
2897905 GACTTGAGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
32 5 0.13
33 32 0.84
34 1 0.03
ACGTcount: A:0.28, C:0.39, G:0.11, T:0.22
Consensus pattern (32 bp):
TGCCTGCCCCAACACCAAGTTAGCAACTATAA
Found at i:2898118 original size:23 final size:24
Alignment explanation
Indices: 2898092--2898136 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
2898082 TAATTTATTA
*
2898092 ATATAATATACA-TATATCTATAG
1 ATATAAAATACATTATATCTATAG
*
2898115 ATATAAAATACATTATTTCTAT
1 ATATAAAATACATTATATCTAT
2898137 CTATACCCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.47, C:0.09, G:0.02, T:0.42
Consensus pattern (24 bp):
ATATAAAATACATTATATCTATAG
Found at i:2911257 original size:59 final size:59
Alignment explanation
Indices: 2911192--2911308 Score: 225
Period size: 59 Copynumber: 2.0 Consensus size: 59
2911182 AGAAAGAAAG
2911192 AAAAAAAGCAAAATATTCTTATGGTTTTGGGTTTTTTGTTTTAATTTGCATATTTATTA
1 AAAAAAAGCAAAATATTCTTATGGTTTTGGGTTTTTTGTTTTAATTTGCATATTTATTA
*
2911251 AAAAAAAGCAAAATATTCTTATGGTTTTGGGTTTTTTGTTTTAATTTGTATATTTATT
1 AAAAAAAGCAAAATATTCTTATGGTTTTGGGTTTTTTGTTTTAATTTGCATATTTATT
2911309 TTGGAAAGGT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.32, C:0.04, G:0.14, T:0.50
Consensus pattern (59 bp):
AAAAAAAGCAAAATATTCTTATGGTTTTGGGTTTTTTGTTTTAATTTGCATATTTATTA
Found at i:2914789 original size:30 final size:31
Alignment explanation
Indices: 2914755--2914831 Score: 77
Period size: 31 Copynumber: 2.5 Consensus size: 31
2914745 AATTATTAAT
*
2914755 TATAAAAACTTATTTG-ATCCAAAATAAAAA
1 TATAAAAACTTATTTGAATCCAAAAGAAAAA
* * *
2914785 TAT-AAAACTTTAATTGAATGCAATAGAAAAA
1 TATAAAAAC-TTATTTGAATCCAAAAGAAAAA
*
2914816 TATTAAAAATTTATTT
1 TA-TAAAAACTTATTT
2914832 AAAATTTTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
29 5 0.14
30 9 0.24
31 13 0.35
32 6 0.16
33 4 0.11
ACGTcount: A:0.53, C:0.06, G:0.05, T:0.35
Consensus pattern (31 bp):
TATAAAAACTTATTTGAATCCAAAAGAAAAA
Found at i:2914861 original size:10 final size:10
Alignment explanation
Indices: 2914821--2914863 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
2914811 AAAAATATTA
2914821 AAAATTTATTT
1 AAAATTT-TTT
2914832 AAAA-TTTTT
1 AAAATTTTTT
**
2914841 AAAATAATTT
1 AAAATTTTTT
2914851 AAAATTTTTT
1 AAAATTTTTT
2914861 AAA
1 AAA
2914864 GCATTATGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
9 7 0.26
10 16 0.59
11 4 0.15
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (10 bp):
AAAATTTTTT
Found at i:2915655 original size:15 final size:15
Alignment explanation
Indices: 2915609--2915736 Score: 58
Period size: 15 Copynumber: 8.9 Consensus size: 15
2915599 TTTTAATGTC
2915609 ATATA-TTTATTTTT
1 ATATATTTTATTTTT
* * * *
2915623 ATTTTATTATAATCTT
1 A-TATATTTTATTTTT
2915639 ATATATTTTATTTTT
1 ATATATTTTATTTTT
* *
2915654 AT-T-TCTTTA-ATAT
1 ATATAT-TTTATTTTT
*
2915667 A-AT-TTTTA-TATT
1 ATATATTTTATTTTT
*
2915679 ATATATTTTATTTTA
1 ATATATTTTATTTTT
* *
2915694 ATTTATTTTA-TTGT
1 ATATATTTTATTTTT
* *
2915708 ATAAATTTTAATTTCT
1 ATATATTTT-ATTTTT
2915724 -TATATTTTATTTT
1 ATATATTTTATTTT
2915737 ATTTTAATTT
Statistics
Matches: 82, Mismatches: 23, Indels: 18
0.67 0.19 0.15
Matches are distributed among these distances:
12 6 0.07
13 8 0.10
14 24 0.29
15 34 0.41
16 10 0.12
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.67
Consensus pattern (15 bp):
ATATATTTTATTTTT
Found at i:2915688 original size:34 final size:34
Alignment explanation
Indices: 2915609--2915691 Score: 95
Period size: 34 Copynumber: 2.6 Consensus size: 34
2915599 TTTTAATGTC
*
2915609 ATATATT-TATTTTTA--T-TTTATTATAATCTT
1 ATATATTATATTTTTATTTCTTTAATATAATCTT
*
2915639 ATATATTTTATTTTTATTTCTTTAATATAAT-TT
1 ATATATTATATTTTTATTTCTTTAATATAATCTT
*
2915672 TTATATTATATATTTTATTT
1 ATATATTATAT-TTTTATTT
2915692 TAATTTATTT
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
30 7 0.16
31 8 0.18
33 12 0.27
34 18 0.40
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (34 bp):
ATATATTATATTTTTATTTCTTTAATATAATCTT
Found at i:2915690 original size:5 final size:5
Alignment explanation
Indices: 2915682--2915775 Score: 57
Period size: 5 Copynumber: 18.4 Consensus size: 5
2915672 TTATATTATA
* * * * * * *
2915682 TATTT TATTT TAATT TATTT TATTG TA-TA AATTT TAATT TCTTA TATTT
1 TATTT TATTT TATTT TATTT TATTT TATTT TATTT TATTT TATTT TATTT
* *
2915731 TATTT TATTT TAATTTT TAATTCT TATAT TA-TA TATTT TATTT TA
1 TATTT TATTT T-A-TTT T-ATT-T TATTT TATTT TATTT TATTT TA
2915776 ATTATAACAT
Statistics
Matches: 67, Mismatches: 17, Indels: 10
0.71 0.18 0.11
Matches are distributed among these distances:
4 4 0.06
5 50 0.75
6 5 0.07
7 8 0.12
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.68
Consensus pattern (5 bp):
TATTT
Found at i:2915702 original size:29 final size:28
Alignment explanation
Indices: 2915670--2915778 Score: 93
Period size: 29 Copynumber: 3.9 Consensus size: 28
2915660 TTAATATAAT
2915670 TTTTATATTATATATTTTATTTTAATTTA
1 TTTTAT-TTATATATTTTATTTTAATTTA
* * *
2915699 TTTTATTGTATAAATTTTAATTT-CTTATA
1 TTTTATT-TATATATTTTATTTTAATT-TA
* *
2915728 TTTTATTT-TAT-TTTAATTTTTAA-TTC
1 TTTTATTTATATATTTTA-TTTTAATTTA
*
2915754 TTATA-TTATATATTTTATTTTAATT
1 TTTTATTTATATATTTTATTTTAATT
2915779 ATAACATTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
25 2 0.03
26 18 0.29
27 11 0.17
28 4 0.06
29 28 0.44
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.68
Consensus pattern (28 bp):
TTTTATTTATATATTTTATTTTAATTTA
Found at i:2915715 original size:44 final size:41
Alignment explanation
Indices: 2915637--2915778 Score: 141
Period size: 40 Copynumber: 3.5 Consensus size: 41
2915627 TATTATAATC
* * *
2915637 TTATATATTTTATTTTTATTTCTTTA-ATATAATTTTTATA
1 TTATATATTTTATTTTAATTTTTTTATTTATAATTTTTATA
*
2915677 TTATATATTTTATTTTAATTTATTTTATTGTATAAATTTTA-A
1 TTATATATTTTATTTTAATTT-TTTTATT-TATAATTTTTATA
* * * *
2915719 TTTCTTATATTTTATTTT-A--TTTTAATTTTTAATTCTTATA
1 -TT-ATATATTTTATTTTAATTTTTTTATTTATAATTTTTATA
2915759 TTATATATTTTATTTTAATT
1 TTATATATTTTATTTTAATT
2915779 ATAACATTAT
Statistics
Matches: 83, Mismatches: 10, Indels: 17
0.75 0.09 0.15
Matches are distributed among these distances:
38 13 0.16
39 11 0.13
40 27 0.33
41 5 0.06
42 1 0.01
43 13 0.16
44 13 0.16
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.68
Consensus pattern (41 bp):
TTATATATTTTATTTTAATTTTTTTATTTATAATTTTTATA
Found at i:2916083 original size:27 final size:28
Alignment explanation
Indices: 2916031--2916083 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
2916021 AACGCTACCA
2916031 TTATGTTAAAAAATACAGTTATTATATG
1 TTATGTTAAAAAATACAGTTATTATATG
* *
2916059 TTATGTT-AAAGATATAGTTATTATA
1 TTATGTTAAAAAATACAGTTATTATA
2916084 CACTATATTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.42, C:0.02, G:0.11, T:0.45
Consensus pattern (28 bp):
TTATGTTAAAAAATACAGTTATTATATG
Found at i:2916218 original size:23 final size:23
Alignment explanation
Indices: 2916195--2916240 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
2916185 TTAACTCTTT
2916195 ATTATAAAAAATTAAAAAAATTTA
1 ATTAT-AAAAATTAAAAAAATTTA
* * *
2916219 ATTATTATAATTAAAAATATTT
1 ATTATAAAAATTAAAAAAATTT
2916241 TATTCTTAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (23 bp):
ATTATAAAAATTAAAAAAATTTA
Found at i:2926686 original size:38 final size:33
Alignment explanation
Indices: 2926610--2926671 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
2926600 GTCATATAAC
2926610 TATA-TTATTATATCATATCAATATGTCATATT
1 TATATTTATTATATCATATCAATATGTCATATT
*
2926642 TTTATTTATTATAAT-ATATCAATATGTCAT
1 TATATTTATTAT-ATCATATCAATATGTCAT
2926672 GTGAGTGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
32 3 0.11
33 22 0.81
34 2 0.07
ACGTcount: A:0.37, C:0.08, G:0.03, T:0.52
Consensus pattern (33 bp):
TATATTTATTATATCATATCAATATGTCATATT
Found at i:2926749 original size:24 final size:26
Alignment explanation
Indices: 2926708--2926756 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 26
2926698 AAATATCATT
* *
2926708 TTAACTTATAATACTTTA-TTAATTA
1 TTAACTTATAAAAATTTATTTAATTA
2926733 TTAA-TTATAAAAATTTATTTAATT
1 TTAACTTATAAAAATTTATTTAATT
2926757 TAAAATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (26 bp):
TTAACTTATAAAAATTTATTTAATTA
Found at i:2929681 original size:28 final size:28
Alignment explanation
Indices: 2929649--2929704 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
2929639 TTGCATTTCT
2929649 AATGTTTATAGCTTGTAATAGGGATGCA
1 AATGTTTATAGCTTGTAATAGGGATGCA
* *
2929677 AATGTTTATAGCTTGTATTATGGATGCA
1 AATGTTTATAGCTTGTAATAGGGATGCA
2929705 GATTGTACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.39
Consensus pattern (28 bp):
AATGTTTATAGCTTGTAATAGGGATGCA
Found at i:2930290 original size:46 final size:48
Alignment explanation
Indices: 2930218--2930311 Score: 147
Period size: 46 Copynumber: 2.0 Consensus size: 48
2930208 CGAGAGATGA
* *
2930218 ATGCTCTGCTCTGTAGTGAATGGTAAAA-TT-TGTCAGAATTTGTTCT
1 ATGCTCTGCTCTGTAGTGAATAGTAAAATTTATGTCAGAATCTGTTCT
*
2930264 ATGCTCTGCTCTGTAGTGATTAGTAAAATTTATGTCAGAATCTGTTCT
1 ATGCTCTGCTCTGTAGTGAATAGTAAAATTTATGTCAGAATCTGTTCT
2930312 GGCGAACCAT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
46 26 0.60
47 2 0.05
48 15 0.35
ACGTcount: A:0.24, C:0.14, G:0.20, T:0.41
Consensus pattern (48 bp):
ATGCTCTGCTCTGTAGTGAATAGTAAAATTTATGTCAGAATCTGTTCT
Found at i:2935480 original size:18 final size:19
Alignment explanation
Indices: 2935459--2935497 Score: 71
Period size: 18 Copynumber: 2.1 Consensus size: 19
2935449 TTCTCTTTAT
2935459 TGTCTCCTTAT-TAATTAA
1 TGTCTCCTTATGTAATTAA
2935477 TGTCTCCTTATGTAATTAA
1 TGTCTCCTTATGTAATTAA
2935496 TG
1 TG
2935498 AGCAATTAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.26, C:0.15, G:0.10, T:0.49
Consensus pattern (19 bp):
TGTCTCCTTATGTAATTAA
Found at i:2935827 original size:19 final size:19
Alignment explanation
Indices: 2935805--2935845 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
2935795 AAAGTTCTTA
*
2935805 ATTTAAGTATCCATACTTG
1 ATTTAAGCATCCATACTTG
2935824 ATTTAAGCATCCATACTTG
1 ATTTAAGCATCCATACTTG
2935843 ATT
1 ATT
2935846 AATAGACTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.32, C:0.17, G:0.10, T:0.41
Consensus pattern (19 bp):
ATTTAAGCATCCATACTTG
Done.