Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398854.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2136.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2451
ACGTcount: A:0.25, C:0.10, G:0.08, T:0.26

Warning! 744 characters in sequence are not A, C, G, or T


Found at i:2438 original size:171 final size:169

Alignment explanation


    Indices: 2129--2449  Score: 457
    Period size: 170  Copynumber: 1.9  Consensus size: 169

       2119 NNNNNNNNNN

                                                     *     **     *          
       2129 GATTTTAAGCTGAATTTTTTCAAACTTTGGTTAAAACAGACTATAATTGAATGTTTAACTCATGA
          1 GATTTTAAGCTGAATTTTTTCAAACTTTGGTTAAAACAGACAATAATAAAATGTATAACTCATGA

                                 *                         * *             * 
       2194 AACATGAAGAAAAAGTATTGATTGGCAAGAAAAGTCCATTTATAGTCTCTCATTCCTTCAAAAGT
         66 AACATGAAGAAAAAGTATTGACTGGCAAGAAAAGTCCATTTATAGTCACCCATTCCTTCAAAACT

                       *                           
       2259 GTTATTACTCGTTTTAAATGATTTTTCAGTCTCATAATT
        131 GTTATTACTCGCTTTAAATGATTTTTCAGTCTCATAATT

                     *             *                                   *     
       2298 GATTTTAAGTTGAACTTTTTT-ACACTTTTGGTTAAAACAGACAATAATAAAATGTATACCTCAT
          1 GATTTTAAGCTGAA-TTTTTTCAAAC-TTTGGTTAAAACAGACAATAATAAAATGTATAACTCAT

                        *         *     *                                    
       2362 GAAACATGAAGAGAAAGTCATTTACTGGTAAGAAAAGTCCATTTATAGTCACCCATTCCTTCAAA
         64 GAAACATGAAGAAAAAGT-ATTGACTGGCAAGAAAAGTCCATTTATAGTCACCCATTCCTTC-AA

                                    
       2427 AACT-TTATTACTCGCTTTAAATG
        127 AACTGTTATTACTCGCTTTAAATG

       2450 GT


Statistics
Matches: 133,  Mismatches: 15, Indels: 6
        0.86            0.10        0.04

Matches are distributed among these distances:
 169   16  0.12
 170   56  0.42
 171   56  0.42
 172    5  0.04

ACGTcount: A:0.36, C:0.14, G:0.13, T:0.36


Consensus pattern (169 bp):   
GATTTTAAGCTGAATTTTTTCAAACTTTGGTTAAAACAGACAATAATAAAATGTATAACTCATGA
AACATGAAGAAAAAGTATTGACTGGCAAGAAAAGTCCATTTATAGTCACCCATTCCTTCAAAACT
GTTATTACTCGCTTTAAATGATTTTTCAGTCTCATAATT
Done.