Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398860.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2142.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2114
ACGTcount: A:0.24, C:0.09, G:0.10, T:0.25

Warning! 681 characters in sequence are not A, C, G, or T


Found at i:1395 original size:171 final size:171

Alignment explanation


    Indices: 1172--1481  Score: 413
    Period size: 171  Copynumber: 1.8  Consensus size: 171

       1162 CAATTTTTAG

                               *     *     *                         **      
       1172 ATTACAAAACTATTTAAAGTGAGTATTAAGGTTTTTGAAGGAATAGGTGACTATAAATGGACTTT
          1 ATTACAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAGGTGACTATAAACAGACTTT

                                      *                            *         
       1237 TCTTGCCAACAAATACCTTTTTCTTTGCGTTTCTCAAAATTGACATTCAATTATAGTCTGTTTTA
         66 TCTTGCCAACAAATACCTTTTTCTTTACGTTTCTCAAAATTGACATTCAATTATAATCTGTTTTA

                                                     
       1302 ACAAAAAAAGTAAAACACTTCAACCAAAAATCAATTATGGC
        131 ACAAAAAAAGTAAAACACTTCAACCAAAAATCAATTATGGC

                *                      *          *     *                *   
       1343 ATTATAAAACTATTTAAAGCGAGTAATGAGGCTTTTGATGGAATGGGTGACTATAAACAGATTTT
          1 ATTACAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAGGTGACTATAAACAGACTTT

                     ***  *       *    *      ** **                          
       1408 TCTTGCCAATGTATGCCTTTTTGTTTATGTTTCTTGAGGTTGACATTCAATTATAATCTGTTTTA
         66 TCTTGCCAACAAATACCTTTTTCTTTACGTTTCTCAAAATTGACATTCAATTATAATCTGTTTTA

              *      
       1473 ACCAAAAAA
        131 ACAAAAAAA

       1482 TGTACAAAGA


Statistics
Matches: 116,  Mismatches: 23, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
 171  116  1.00

ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37


Consensus pattern (171 bp):   
ATTACAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAGGTGACTATAAACAGACTTT
TCTTGCCAACAAATACCTTTTTCTTTACGTTTCTCAAAATTGACATTCAATTATAATCTGTTTTA
ACAAAAAAAGTAAAACACTTCAACCAAAAATCAATTATGGC
Done.