Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398879.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2161.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 777

Length: 1295
ACGTcount: A:0.17, C:0.06, G:0.05, T:0.17

Warning! 716 characters in sequence are not A, C, G, or T


Found at i:299 original size:172 final size:172

Alignment explanation


    Indices: 1--334  Score: 445
    Period size: 172  Copynumber: 1.9  Consensus size: 172

                 *         *           *                  *               *  
          1 TTTTTGGTTAAAACAGACTAGAATTGACTGTCTACATCGAGAAACATGAAGAAAAAAGCATTGAT
          1 TTTTTAGTTAAAACAAACTAGAATTGAATGTCTACATCGAGAAACACGAAGAAAAAAGCATTCAT

                               *       *        *     *                      
         66 TAGTAAGAAAAGTCCATTTTTAGTCACTTATACCTTTAAAAAGCCTTATTACTAACTTTAAATAG
         66 TAGTAAGAAAAGTCCATTTATAGTCACCTATACCTTCAAAAAACCTTATTACTAACTTTAAATAG

                *                                     
        131 TTTTTTAATGCCATAATAGATTTTAAGCTGAATTTTTTTACA
        131 TTTTATAATGCCATAATAGATTTTAAGCTGAATTTTTTTACA

                                *          *   * *              * *          
        173 TTTTTAGTTAAAACAAACTATAATTGAATGTTTACCTTG-GAAAACACGAAGTAGAAAGCATTCA
          1 TTTTTAGTTAAAACAAACTAGAATTGAATGTCTACATCGAG-AAACACGAAGAAAAAAGCATTCA

                  *       *                 *           *          *         
        237 TTAGTATGAAAAGTTCATTTATAGTCACCTATGCCTTCAAAAAATCTTATTACTAGCTTTAAATA
         65 TTAGTAAGAAAAGTCCATTTATAGTCACCTATACCTTCAAAAAACCTTATTACTAACTTTAAATA

                              *         *    
        302 GTTTTATAATGCCATAATCGATTTTAAGTTGAA
        130 GTTTTATAATGCCATAATAGATTTTAAGCTGAA

        335 NNNNNNNNNN


Statistics
Matches: 138,  Mismatches: 23, Indels: 2
        0.85            0.14        0.01

Matches are distributed among these distances:
 171    1  0.01
 172  137  0.99

ACGTcount: A:0.38, C:0.13, G:0.13, T:0.37


Consensus pattern (172 bp):   
TTTTTAGTTAAAACAAACTAGAATTGAATGTCTACATCGAGAAACACGAAGAAAAAAGCATTCAT
TAGTAAGAAAAGTCCATTTATAGTCACCTATACCTTCAAAAAACCTTATTACTAACTTTAAATAG
TTTTATAATGCCATAATAGATTTTAAGCTGAATTTTTTTACA
Done.