Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398887.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2169.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 700

Length: 1168
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.31

Warning! 203 characters in sequence are not A, C, G, or T


Found at i:714 original size:171 final size:169

Alignment explanation


    Indices: 512--911  Score: 414
    Period size: 170  Copynumber: 2.3  Consensus size: 169

        502 ATAGTTTTCT

                         *                          *   *                    
        512 TTAACCAAAAAT-ATAAAACAATTATACTTAAAATCAATTCTGACATTATAAAACAATTTTAAGT
          1 TTAACCAAAAATGTTAAAA-AATTA-ACTTAAAATCAATTATGAGATTATAAAACAATTTTAAGT

               *                            *                                
        576 GAGCAATAAGGCTTTTGAAGGAAAGGGTGACTGTATATGGACTTTAATTCTC-AACGAATG-ATA
         64 GAGAAATAAGGCTTTTGAAGGAAAGGGTGACTATA-ATGGACTTTAATT-TCAAACGAATGCA-A

                                                *  *   *  
        639 TTTTCTACACGTTTCTTGCA-GCAGGA-ATTCAATTGTAGTCTGTG
        126 TTTTCTACACGTTTCTTG-AGGCA-GACATTCAATTATAATCTATG

                               *              *    *          **********     
        683 TTAACCAAAAATGTTAAAATATTCAACTTAAAATTAATTTTGAGATTATANNNNNNNNNNAAGTG
          1 TTAACCAAAAATGTTAAAAAATT-AACTTAAAATCAATTATGAGATTATAAAACAATTTTAAGTG

                                  *                    *        *            
        748 AGAAATAAGGCTTTTGAAGGAATGGGTGACTATAATGGACTTTCATTTCAAATGAATGCAATTTT
         65 AGAAATAAGGCTTTTGAAGGAAAGGGTGACTATAATGGACTTTAATTTCAAACGAATGCAATTTT

              *              *                     *
        813 CTCCACGTTTCTTGAGGTAGACATTCAATTATAATCTATT
        130 CTACACGTTTCTTGAGGCAGACATTCAATTATAATCTATG

                **                                               *     
        853 TTAAGTAAAAATGTTAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAATAATTT
          1 TTAACCAAAAATGTTAAAAAA-TTAACTTAAAATCAATTATGAGATTATAAAACAATTT

        912 NNNNNNNNNN


Statistics
Matches: 182,  Mismatches: 40, Indels: 15
        0.77            0.17        0.06

Matches are distributed among these distances:
 169    5  0.03
 170   95  0.52
 171   76  0.42
 172    6  0.03

ACGTcount: A:0.39, C:0.11, G:0.14, T:0.34


Consensus pattern (169 bp):   
TTAACCAAAAATGTTAAAAAATTAACTTAAAATCAATTATGAGATTATAAAACAATTTTAAGTGA
GAAATAAGGCTTTTGAAGGAAAGGGTGACTATAATGGACTTTAATTTCAAACGAATGCAATTTTC
TACACGTTTCTTGAGGCAGACATTCAATTATAATCTATG
Done.