Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398890.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2172.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3605
ACGTcount: A:0.22, C:0.07, G:0.08, T:0.21

Warning! 1503 characters in sequence are not A, C, G, or T


Found at i:404 original size:172 final size:171

Alignment explanation


    Indices: 1--552  Score: 486
    Period size: 171  Copynumber: 3.2  Consensus size: 171

                              *   *    *          *             * *          
          1 ATTATGAGATTATAAAACTATTCAAAGTGAGTAATAAGCCTTTTGAAGGAATGATTGACTATAAA
          1 ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAAATGACTATAAA

             *                *                         *                 *  
         66 TGGACTTTTATTCTCAATTAATGGCTTTTCCTATACGTTTCTTACGATAGAGATTCAATTATTGT
         66 TAGACTTTTATTCTCAATGAATGGCTTTTCCTATACGTTTCTTAAGATAGAGATTCAATTATAGT

                                    **     *         
        131 CTGTTTTAAAGAAAAATGTAAAACCGTTCAAGTTAAAATCA
        131 CTGTTTTAAAGAAAAATGTAAAACAATTCAACTTAAAATCA

                             *                         **   *     *       *  
        172 ATTATGAGATTATAAAATCATTTAAA-CTGAGTAATAAGGCTTCCGAATGAATAGATGACTAAAA
          1 ATTATGAGATTATAAAACCATTTAAAGC-GAGTAATAAGGCTTTTGAAGGAATAAATGACTATAA

                 *    *                   *        *         *      *        
        236 ATAGATTTTTCTTCTCAATGAATGGCTTTTTCTACATA-TTTTC-TAAGCTAG-GCTTTCAATTA
         65 ATAGACTTTTATTCTCAATGAATGGCTTTTCCT--ATACGTTTCTTAAGATAGAG-ATTCAATTA

                             *          *               * 
        298 TAGTCTGTTTTAAAGAACAATGTCAAAATAATTCAACTTAAAATTA
        127 TAGTCTGTTTTAAAGAAAAATGT-AAAACAATTCAACTTAAAATCA

                                         *    *                              
        344 ATTATGAGATTATAAAACCATTTAAAGCGGGTAAAAAGGCTTTTGAAGGAATAAATGACTATAAA
          1 ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAAATGACTATAAA

                *********     *    *      ** **  * *   *    *   *            
        409 T-GNNNNNNNNNNCTCAACGAATAGCTTTTTTTGCACATGTCTCAAGACAGATATTCAATTATAG
         66 TAG-ACTTTTATTCTCAATGAATGGCTTTTCCTATACGTTTCTTAAGATAGAGATTCAATTATAG

               *              **    *     *            
        473 TCTATTTTAAA-AAAAATACAAAAAAGATTAAACTTAAAATCA
        130 TCTGTTTTAAAGAAAAATGTAAAACA-ATTCAACTTAAAATCA

                             **                   
        515 ATTATGAGATTATAAAATTATTTAAAGCGAGTAATAAG
          1 ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAG

        553 NNNNNNNNNN


Statistics
Matches: 302,  Mismatches: 68, Indels: 22
        0.77            0.17        0.06

Matches are distributed among these distances:
 170    7  0.02
 171  171  0.57
 172  120  0.40
 173    4  0.01

ACGTcount: A:0.40, C:0.11, G:0.13, T:0.34


Consensus pattern (171 bp):   
ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAAATGACTATAAA
TAGACTTTTATTCTCAATGAATGGCTTTTCCTATACGTTTCTTAAGATAGAGATTCAATTATAGT
CTGTTTTAAAGAAAAATGTAAAACAATTCAACTTAAAATCA
Done.