Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398891.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2173.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2757
ACGTcount: A:0.25, C:0.10, G:0.10, T:0.27

Warning! 775 characters in sequence are not A, C, G, or T


Found at i:2608 original size:170 final size:171

Alignment explanation


    Indices: 2176--2631  Score: 469
    Period size: 171  Copynumber: 2.7  Consensus size: 171

       2166 NNNNNNNNNG

                      * *                     *  *    *                      
       2176 ATTTTAAGTTTATTTTTTTTACA-TTCTTGGTTATAACAGATAATAATTGAATGTCTACCTTGAG
          1 ATTTTAAGTTGAATTTTTTTACATTTC-TGGTTAAAAAAGATTATAATTGAATGTCTACCTTGAG

                   *                    *                   *  *    **       
       2240 AAATGTGTAGAAAAAACCATTCATTAGGAAT-AAAAGTT-TATTTATACTCTCTCATTCCTTCAA
         65 AAATGTGAAG-AAAAACCATTCATT-GGCATGAAAAGTTCTATTTATAGTCACTCAAGCCTTCAA

                                             *         *
       2303 AAGCTTGATTACTCACTTTAAATGGTTTAATAATCTCATAATTG
        128 AAGCTTGATTACTCACTTTAAATGGTTTAATAAACTCATAATTA

             *  *          *     *    *                      *     * *    *  
       2347 ACTTCAAGTTGAATTGTTTTATATTTTTGGTTAAAAAAGGA-TATAATTTAATGTTTGCCTTAAG
          1 ATTTTAAGTTGAATTTTTTTACATTTCTGGTTAAAAAA-GATTATAATTGAATGTCTACCTTGAG

            *  *           *    *                                         *  
       2411 GAACGTGAAGCAAAATCCATCCATTGGCATGAAAA-TTCTATTTATAGTCACTCAAGCCTTCGAA
         65 AAATGTGAAG-AAAAACCATTCATTGGCATGAAAAGTTCTATTTATAGTCACTCAAGCCTTCAAA

                       * **                             
       2475 AGCCTT-ATTATTTGCTTTAAATGGTTT-ATAAACTCATAATTA
        129 AG-CTTGATTACTCACTTTAAATGGTTTAATAAACTCATAATTA

                                                *        *                   
       2517 ATTTTAAGTTGAATTTTTTTACATTTCTGGTTAAAATAGATTATAGTTGAATGTCTACCTTGAGA
          1 ATTTTAAGTTGAATTTTTTTACATTTCTGGTTAAAAAAGATTATAATTGAATGTCTACCTTGAGA

                          **            *       *              
       2582 AATGTGAAGAGAAAGGCATTCATTGGCAAGAAAAGTGC-ATTTATAGTCAC
         66 AATGTGAAGA-AAAACCATTCATTGGCATGAAAAGTTCTATTTATAGTCAC

       2632 CCATTTCTTC


Statistics
Matches: 228,  Mismatches: 49, Indels: 17
        0.78            0.17        0.06

Matches are distributed among these distances:
 169    3  0.01
 170  108  0.47
 171  110  0.48
 172    7  0.03

ACGTcount: A:0.34, C:0.12, G:0.14, T:0.39


Consensus pattern (171 bp):   
ATTTTAAGTTGAATTTTTTTACATTTCTGGTTAAAAAAGATTATAATTGAATGTCTACCTTGAGA
AATGTGAAGAAAAACCATTCATTGGCATGAAAAGTTCTATTTATAGTCACTCAAGCCTTCAAAAG
CTTGATTACTCACTTTAAATGGTTTAATAAACTCATAATTA
Done.