Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398904.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2185.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6600
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.17

Warning! 3449 characters in sequence are not A, C, G, or T


Found at i:471 original size:170 final size:159

Alignment explanation


    Indices: 263--592  Score: 295
    Period size: 170  Copynumber: 2.0  Consensus size: 159

        253 NNNNNNAAAG

                      *         *       *                      *  *          
        263 TGAGTAATAATGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCTTGTCATTGAATGCTCT
          1 TGAGTAATAAGGCTTTTGAAAGAATGAGAGACTATAAATAGACTTTTCTTGCCAATGAATGCTCT

                             *   * *            *             *     *        
        328 TGTCTTCATG-TTTCTCGAGATAGACAGTCAATCATTATCTATTTTAA-GTAAAATGTAAAAAAA
         66 TGTCTT--TGCTTTCTCAAGACAAACAGTCAATCATAATCTATTTTAATGAAAAATAT-AAAAAA

                                  *                   
        391 TTCAACTTAAAATCAATTATTATATTAGNNNNNNNNNNAAAA
        128 TTCAACTTAAAATCAATTATTAGATTAG----------AAAA

                                      *   **       *                       * 
        433 TGAGTAATAAGGCTTTTGAAAGAATGGGAGGTTATAAATCGACTTTTCTTGCCAATGAATGCTTT
          1 TGAGTAATAAGGCTTTTGAAAGAATGAGAGACTATAAATAGACTTTTCTTGCCAATGAATGCTCT

             *                 *      *     *       *                        
        498 TTTCTTTGCTTTTCTCAAGGCAAACATTCAATTATAATCTGTTTTAATGAAAAATATAAAAAATT
         66 TGTCTTTGC-TTTCTCAAGACAAACAGTCAATCATAATCTATTTTAATGAAAAATATAAAAAATT

            *        *               *    
        563 TAACTTAAACTCAATTATTAGATTACAAAA
        130 CAACTTAAAATCAATTATTAGATTAGAAAA

        593 CCATTTAAAA


Statistics
Matches: 132,  Mismatches: 25, Indels: 16
        0.76            0.14        0.09

Matches are distributed among these distances:
 160    4  0.03
 168    2  0.02
 170  119  0.90
 171    7  0.05

ACGTcount: A:0.36, C:0.11, G:0.13, T:0.36


Consensus pattern (159 bp):   
TGAGTAATAAGGCTTTTGAAAGAATGAGAGACTATAAATAGACTTTTCTTGCCAATGAATGCTCT
TGTCTTTGCTTTCTCAAGACAAACAGTCAATCATAATCTATTTTAATGAAAAATATAAAAAATTC
AACTTAAAATCAATTATTAGATTAGAAAA
Done.