Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398919.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2200.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 613

Length: 1023
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.33

Warning! 84 characters in sequence are not A, C, G, or T


Found at i:328 original size:172 final size:170

Alignment explanation


    Indices: 18--485  Score: 475
    Period size: 172  Copynumber: 2.7  Consensus size: 170

          8 GTAATAAAGC

                          **                     * * *                     * 
         18 TTTTGAAGGAATGGGCGACTATAAATAGACTTTTCTTACCATTGAATCCCTTTTTCTTCACATTT
          1 TTTTGAAGGAATGGATGACTATAAATAGACTTTT-TTTCTAATGAATCCCTTTTTCTTCACA-GT

                                   *                         *    ********** 
         83 CTTAAAGTAGACATTCAATTATAATCTGTTTTAACCAAAAATGTAAAAACATTCNNNNNNNNNNC
         64 CTTAAAGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTATAATC

                                                     ** 
        148 AATTATGAGATTATAAAACC-ATTTAAAGTA-AGCAATAA-GGT
        129 AATTATGAGATTAT-AAACCTATTTAAAG-AGAGCAATAACCCT

                                *                                            
        189 TTTTGAAGGAATGGATGACTTTAAATAGACTTTGTTTTGCTAATGAATCCCTTTTTCTTCACAGC
          1 TTTTGAAGGAATGGATGACTATAAATAGACTTT-TTTT-CTAATGAATCCCTTTTTCTTCACAG-

                *                                     *           *          
        254 TCTTGAAGTAGACATTCAATTATAGTCTGTTTTAACCAAAAACGTAAAAAAATTTAACTTATAAT
         63 TCTTAAAGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTATAAT

              *                              *         
        319 CAGTTATGAGATTATAAACCTATTTAAAGAGAGTAATAACCCT
        128 CAATTATGAGATTATAAACCTATTTAAAGAGAGCAATAACCCT

                                                            **               
        362 TTTT-AAGGAATGGATGACTATAAATAGA-TTTTTCTTCTTAATGAATGGCTTTTTC-T-ACATG
          1 TTTTGAAGGAATGGATGACTATAAATAGACTTTTT-TTC-TAATGAATCCCTTTTTCTTCACA-G

                     *  * *                        *                        
        423 T-TTCCCAAGGTTGGCATTCAATTATAGTCTGTTTTAACAAAAAATGTAAAAAAATTCAACTTA
         63 TCTT---AAAGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTA

        486 AAANNNNNNN


Statistics
Matches: 249,  Mismatches: 36, Indels: 24
        0.81            0.12        0.08

Matches are distributed among these distances:
 168    2  0.01
 169    4  0.02
 170    5  0.02
 171  108  0.43
 172  125  0.50
 173    5  0.02

ACGTcount: A:0.36, C:0.13, G:0.13, T:0.36


Consensus pattern (170 bp):   
TTTTGAAGGAATGGATGACTATAAATAGACTTTTTTTCTAATGAATCCCTTTTTCTTCACAGTCT
TAAAGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTCAACTTATAATCAA
TTATGAGATTATAAACCTATTTAAAGAGAGCAATAACCCT
Done.