Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398925.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2208.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6193
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.18

Warning! 3187 characters in sequence are not A, C, G, or T


Found at i:1349 original size:108 final size:99

Alignment explanation


    Indices: 1204--1409  Score: 209
    Period size: 108  Copynumber: 2.0  Consensus size: 99

       1194 CTAATCTCAA

                           *                             * *                 
       1204 AATTAATTTTAAGGTGAATTTTATTACAATTTTTATTAAAACAGATTGTAATTGAATGTCTACCT
          1 AATTAATTTTAAGGTAAATTTTATTACAATTTTTATTAAAACAGACTATAATTGAATGTCTACCT

                                   *                    
       1269 CAAAAAACATAAAG-AAAAAGCATTCATTGGCANNNNNNNNNNT
         66 CAAAAAACATAAAGAAAAAAGCAATCATTGGCA----------T

                *        *               *                                 * 
       1312 AATTGATTTTAAGTTAAATTTCT-TTACATTTTTTATTAAAACAGACTATAATTGAATGTCTATC
          1 AATTAATTTTAAGGTAAATTT-TATTACAATTTTTATTAAAACAGACTATAATTGAATGTCTACC

                     * *                      
       1376 TCAAAAAACGTGAAGAAAAAAGCAATCATTGGCA
         65 TCAAAAAACATAAAGAAAAAAGCAATCATTGGCA

       1410 AGAAAAGTCT


Statistics
Matches: 86,  Mismatches: 10, Indels: 3
        0.87            0.10        0.03

Matches are distributed among these distances:
 108   68  0.79
 109   18  0.21

ACGTcount: A:0.40, C:0.10, G:0.11, T:0.34


Consensus pattern (99 bp):   
AATTAATTTTAAGGTAAATTTTATTACAATTTTTATTAAAACAGACTATAATTGAATGTCTACCT
CAAAAAACATAAAGAAAAAAGCAATCATTGGCAT
Done.