Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018398926.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2210.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 29931
ACGTcount: A:0.32, C:0.10, G:0.11, T:0.29
Warning! 5529 characters in sequence are not A, C, G, or T
Found at i:1053 original size:170 final size:170
Alignment explanation
Indices: 522--1605 Score: 1124
Period size: 171 Copynumber: 6.4 Consensus size: 170
512 NNNNNNNNNN
* * * *
522 TTATAAAACCATTTAAAGCGAGTAATAAGGATTTTGAAAGAATGAGTGACTATAAATGGA----T
1 TTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAATAGACTTTT
* * *
583 -TTGACAATAAATGTCTTTTTCTTCACGTTTCTCAAGGTAGATATTCAATTATAATCTG-TTTAA
66 CTTGCCAATAAAT-TCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAA
* * * *
646 CCAATAATGTAAAAAAAATTGAACCTAAATTCAATTATGAGA
130 CTAAAAATGT-AAAAAAATTGAACTTAAAATCAATTATGAGA
* * * * *
688 TTATAAAAACT-TTTAAAGCAAGTACT-AGAGTTTTTGAAAGAATGAGAGACTATAAATAGACTT
1 TTAT-AAAACTATTTAAAGCGAGTAATAAG-GCTTTTGAAAGAATGGGTGACTATAAATAGACTT
* * * * * *
751 TTCTTGCCAATGAAATT-TTTTTCTTTACGGTTCTCGATGTAGACATTCAATTATAATCTATTTT
64 TTCTTGCCAAT-AAATTCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTT
* * * * * *
815 GAGCAAAAAAGGAAAAAAAATTAAACTTAAAATCAATTTTGAGA
128 -AACTAAAAATGTAAAAAAATTGAACTTAAAATCAATTATGAGA
* *
859 TTATAAAA-TCATTTAAAGTGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAATGGACTTT
1 TTATAAAACT-ATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAATAGACTTT
* * * *
923 TCTTGTCAATAAATTCATTTTT-TTCATGTTTCTCAAGGTAGATATTCAACTATAGTCTGTTTTA
65 TCTTGCCAATAAATTC-TTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTA
* *
987 ACTAAAAATGTAAAAAAACTGAACTTAAAATCAATTTTGAGA
129 ACTAAAAATGTAAAAAAATTGAACTTAAAATCAATTATGAGA
**
1029 TTATAAAACTATTTAAATTGAGTAATATA-GCTTTTGAAAGAATGGGTGACTATAAATAGACTTT
1 TTATAAAACTATTTAAAGCGAGTAATA-AGGCTTTTGAAAGAATGGGTGACTATAAATAGACTTT
* * * * * * *
1093 TCTTGCCAATGAATGCCTTTTTTTTTATATTTCTTAAGGTAGACATTCAATTATAATTTGTTTTA
65 TCTTGCCAATAAAT-TCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTA
* *
1158 ACTAAAAATGTAAATAAAATTGAACCTAAAATCAATTTTGAGA
129 ACTAAAAATGTAAA-AAAATTGAACTTAAAATCAATTATGAGA
* ** * *
1201 TTACAAAACTATTTAAATTGAGTAATAACGCTTTTGAAAGAATAGGTGACTATAAATAGAC-TTT
1 TTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAATAGACTTTT
* * * * * *
1265 CTTGCCAATGAATACGTTTCTCTTCATATTTCTCAAGGTAGACCTTCAATTATAGTCTGTTTTAA
66 CTTGCCAATAAATTC-TTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAA
* * * * *
1330 CCAAAAATTTAAAAACATTTAACTTAAAATCAATTATGAAA
130 CTAAAAATGTAAAAAAATTGAACTTAAAATCAATTATGAGA
* * * * *
1371 TTACAAAACCATTTAAAGCGAGTAATAAGGATTTTG-AAGAAATAGGAGACTATAAATAGACTTT
1 TTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAAG-AATGGGTGACTATAAATAGACTTT
* * * * * * *
1435 TCTT-CTCAATGAATGACTTTTTCTACATGTTT-TCTAAGGCAGGCAGAT-AATTATAGTCTGTT
65 TCTTGC-CAATAAAT-TCTTTTTCTTCATGTTTCTC-AAGGTAGACA-TTCAATTATAATCTGTT
* * * *
1497 TTAA-TAAAAAATGTAAAAAGATTCAATTTAAAATTAATTATGAGA
126 TTAACT-AAAAATGTAAAAAAATTGAACTTAAAATCAATTATGAGA
* * * * *
1542 TTATAAAGCCATTTAAAGCGAGTAATAAGACTTTTGAAAAAATGGGTGACTATAAATGGACTTT
1 TTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAATAGACTTT
1606 NNNNNNNNNN
Statistics
Matches: 784, Mismatches: 104, Indels: 55
0.83 0.11 0.06
Matches are distributed among these distances:
165 2 0.00
166 45 0.06
167 5 0.01
169 4 0.01
170 237 0.30
171 385 0.49
172 106 0.14
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (170 bp):
TTATAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAATAGACTTTT
CTTGCCAATAAATTCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAAC
TAAAAATGTAAAAAAATTGAACTTAAAATCAATTATGAGA
Found at i:2165 original size:173 final size:171
Alignment explanation
Indices: 1738--2530 Score: 825
Period size: 173 Copynumber: 4.6 Consensus size: 171
1728 NNNATAATGC
* * * * * *
1738 AAAACAAATTAAACCTAAAATCAATTGTAAGATTATAAAATCATTT-AAG-CAGTAATAAGGCTT
1 AAAAAAAATTAAACTTAAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
* ** *
1801 TTGAAGGAATGAGAGACTATATATAGACTTTTCTTGCCAATAAATATTTTTTTCTTCACATTTCT
66 TTGAAGGAATGAGAGACTATAAATAGACTTTTCTTGCCAATAAAT-GCTTTTTCTTCATATTTCT
* * * * *
1866 CAAGGTAAAAATTCAATTATAATCTGTTTCAATGTAAAATGT
130 CAAGGTAGATATTCAATTATAATCTGTTTTAATGAAAAAAGT
** * * * * * * *
1908 -AAAAAAATTTGACTTAAAATTAATTATAAGATAACAAAACCTTTTAAAGTGAGTACTAAGGCTT
1 AAAAAAAATTAAACTTAAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
* * * ** * * *
1972 TTGAAGGAATGGGAGACTATAAATCGAGTTTTCTTGCCAACGAATGCCCTTTTCTTCATGTTCCT
66 TTGAAGGAATGAGAGACTATAAATAGACTTTTCTTGCCAATAAATG-CTTTTTCTTCATATTTCT
* * *
2037 CAATGTAGACAGTCAATTATAATCTGTTTTAACT-AAAAAAGT
130 CAAGGTAGATATTCAATTATAATCTGTTTTAA-TGAAAAAAGT
* * *
2079 AAAAAAAAATAAAACTTAAAATCAATTTTGAGATAATAAAACCATTTAAAGTGAGTAATAAGGTT
1 -AAAAAAAATTAAACTTAAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCT
* * * * * *
2144 TTTGAAGGAAT-AGGTGACTATAAATGGACTTTTCGTGCTAATGAATGGCTTTTTCTTTATATTT
65 TTTGAAGGAATGA-GAGACTATAAATAGACTTTTCTTGCCAATAAAT-GCTTTTTCTTCATATTT
** * * *
2208 CTCAACATAGATATTCAATTATAATCTATTTTAATCAAAAAAGC
128 CTCAAGGTAGATATTCAATTATAATCTGTTTTAATGAAAAAAGT
* * * *
2252 AAAAAAAATTTACCTTAAAATCAATTTTGAGATTTTAAAACTATTTAAAGTGAGTAATAAGGCTT
1 AAAAAAAATTAAACTTAAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
* ** *
2317 TTGAAGGAATGAGAGACTATAAATAGACTTTTCTT-CCAAATAAATGAGTTTTT-TAAATGTTTC
66 TTGAAGGAATGAGAGACTATAAATAGACTTTTCTTGCC-AATAAATG-CTTTTTCTTCATATTTC
* * * *
2380 TCTAGGCA-AGTATTCAATTATAATATGTTTTAATGAAAAATGT
129 TCAAGGTAGA-TATTCAATTATAATCTGTTTTAATGAAAAAAGT
* *
2423 --TAAAAATTCAACTTAAAATCAA-TTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
1 AAAAAAAATTAAACTTAAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
* * * *
2485 TTAAAGGAATGAGAGACTATAAATGGACTTTTCTTTCAAATAAATG
66 TTGAAGGAATGAGAGACTATAAATAGACTTTTCTTGCCAATAAATG
2531 GGTTTATGTA
Statistics
Matches: 518, Mismatches: 91, Indels: 30
0.81 0.14 0.05
Matches are distributed among these distances:
168 79 0.15
169 55 0.11
170 4 0.01
171 138 0.27
172 101 0.19
173 140 0.27
174 1 0.00
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.35
Consensus pattern (171 bp):
AAAAAAAATTAAACTTAAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
TTGAAGGAATGAGAGACTATAAATAGACTTTTCTTGCCAATAAATGCTTTTTCTTCATATTTCTC
AAGGTAGATATTCAATTATAATCTGTTTTAATGAAAAAAGT
Found at i:4852 original size:170 final size:160
Alignment explanation
Indices: 4613--4934 Score: 290
Period size: 170 Copynumber: 1.9 Consensus size: 160
4603 AAGTGAGTGC
* * * *
4613 TAAGGCTTTTTAAGGAATGGGTGACTATAAATAGACTTTTATTGCCAATGAATACATTTTTCATC
1 TAAGGCTTTTGAAGGAATGAGAGACTAAAAATAGACTTTTATTGCCAATGAATACATTTTTCATC
*
4678 ATGTTTCT-TGATCAAACATTCAATTATAGTCTGTTTTAACAAAAAACATAAAACAATTCAA-TA
66 ATGTTTCTATGATCAAACATTCAATTATAGTCTATTTTAAC-AAAAACATAAAACAATTCAACT-
4741 TAAAATCAATTATGAGATTATAAAGCCANNNNNNNNNNGTAA
129 TAAAATCAATTATGAGATTATAAAGCCA----------GTAA
* * * * *
4783 TAAGGCTTTTGAAGGAATGAGAGACTAAAAAT-GAACTTTTCTTGGCAATTAATACTTTTTTCTT
1 TAAGGCTTTTGAAGGAATGAGAGACTAAAAATAG-ACTTTTATTGCCAATGAATACATTTTTCAT
********** * ** *
4847 CATGTTTCTNNNNNNNNNNATTCAATTATAGTCTATTTTAACGAAAATGTAAAAGAATTCAACTT
65 CATGTTTCTATGATCAAACATTCAATTATAGTCTATTTTAACAAAAACATAAAACAATTCAACTT
4912 AAAATCAATTATGAGATTATAAA
130 AAAATCAATTATGAGATTATAAA
4935 ACCGTTTAAA
Statistics
Matches: 126, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
169 1 0.01
170 102 0.81
171 23 0.18
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.34
Consensus pattern (160 bp):
TAAGGCTTTTGAAGGAATGAGAGACTAAAAATAGACTTTTATTGCCAATGAATACATTTTTCATC
ATGTTTCTATGATCAAACATTCAATTATAGTCTATTTTAACAAAAACATAAAACAATTCAACTTA
AAATCAATTATGAGATTATAAAGCCAGTAA
Found at i:5342 original size:171 final size:167
Alignment explanation
Indices: 5160--6069 Score: 858
Period size: 171 Copynumber: 5.3 Consensus size: 167
5150 TCAAGCCTTT
* ** * * *
5160 AAAAGCCTTATTACTTGCTATAAATGGTGCTATAAACTCATAATTAATTTTTAGTTGAATATTTT
1 AAAAGCCTTATTACTTGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAAT-TTTT
* ** * * * * *
5225 TGCATTTTTGGTTAAAGCAGATTATAATTGAATGTTTAGCTTAAGAAACCTGAAGAAAAAGTCAT
65 TACATTTTTCATTAAAACAGACTATAATTGAATGTCTACCTTAAGAAACATGAAGAAAAA-TCAT
* * * *
5290 TCCTTGGCCAGAAAAGTTTATTTATTGTCACCCATTCTATC
129 TCATTGG-AAGAAAAGTCTATTTATAGTCACCCATTCT-TC
* * * *
5331 AAAAGCCTTATTACTCGCTTCAAATGGCTTTATTATCTCATAATTGATTTTAAGTTGAATTTTTT
1 AAAAGCCTTATTACTTGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTT
* * * * * *
5396 ACTTTTTTCATTAAAACAGACTATAGTTGAATATCTACCTTGAGAAACTTGAAGAAAAATGAATT
66 ACATTTTTCATTAAAACAGACTATAATTGAATGTCTACCTTAAGAAACATGAAGAAAAAT-CATT
* * * * * *
5461 TATTAGTAGAAAAAGTCCATTTATAGTCTCTCATTCCTTC
130 CATTGGAAG-AAAAGTCTATTTATAGTCACCCATT-CTTC
** * * ** * ***
5501 AAAAATCTTACTACTCT-TTTTAAATAATTTTATAGTCTCATAATTGATTTTAAGTTCTTTTTTT
1 AAAAGCCTTATTACT-TGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTT-GAATTTT
* * * ** * *
5565 TTAACTTTTTTCGTTAAAACAGATTATAATTGTTTGCCTACCTTAGGAAACATGTAA-AAAAAGT
64 TT-ACATTTTTCATTAAAACAGACTATAATTGAATGTCTACCTTAAGAAACATG-AAGAAAAA-T
* * * *
5629 CATTCATTGAGAAAAAAAGTTTATTTATAGTCCCCCATTCCTTT
126 CATTCATTG-GAAGAAAAGTCTATTTATAGTCACCCATT-CTTC
** * *
5673 AAAAGCCTTATTACTCACTTTAAATGGTTTTGTAATCTCATAATTAATTTTAAGTTGAATGTTTT
1 AAAAGCCTTATTACTTGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAAT-TTTT
* *
5738 TACATTTTTGATTAAAACAGACTATAATTGAA-GATCTACCTTAAGAAACATGAAGAGAAATGCA
65 TACATTTTTCATTAAAACAGACTATAATTGAATG-TCTACCTTAAGAAACATGAAGAAAAAT-CA
*
5802 TTCATTGGCAAGAAAAGTCTATTTATAGTCACCTATTCTTTC
128 TTCATTGG-AAGAAAAGTCTATTTATAGTCACCCATTC-TTC
* * * * *
5844 CAAAGTCTTAGTACTTCCTTTAAAAGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTATTT
1 AAAAGCCTTATTACTTGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATT-TTT
**
5909 TACATTTTTCATTAAAACAGACTATAATTGAATGTCTACCTCGAGAAACATGAAGAAAAAAT-AT
65 TACATTTTTCATTAAAACAGACTATAATTGAATGTCTACCTTAAGAAACATGAAG-AAAAATCAT
* * *
5973 TCATTGGCAA-AAAATGTCCATTTATAGTCTCCCATTTCATC
129 TCATTGG-AAGAAAA-GTCTATTTATAGTCACCCA-TTCTTC
** ** ** *
6014 AAAAATCTTATTACTCACTTTAAATAATTTTATAATCTCAAAATTGATTTTAAGTT
1 AAAAGCCTTATTACTTGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTT
6070 CAATNNNNNN
Statistics
Matches: 600, Mismatches: 118, Indels: 43
0.79 0.16 0.06
Matches are distributed among these distances:
169 7 0.01
170 208 0.35
171 247 0.41
172 133 0.22
173 5 0.01
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.40
Consensus pattern (167 bp):
AAAAGCCTTATTACTTGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTT
ACATTTTTCATTAAAACAGACTATAATTGAATGTCTACCTTAAGAAACATGAAGAAAAATCATTC
ATTGGAAGAAAAGTCTATTTATAGTCACCCATTCTTC
Found at i:8983 original size:172 final size:173
Alignment explanation
Indices: 8805--9117 Score: 393
Period size: 172 Copynumber: 1.8 Consensus size: 173
8795 GAAAGACTAC
* ** *
8805 AAATAGACTTTTCTTGAC-AATGAATGTCTTT-TTCTCCATGTTTCTTAAGGTAGAAAATCAATT
1 AAATAGAATTTTCTT-ACAAATGAATG-CTTTGTTCTCCACATTTCTCAAGGTAGAAAATCAATT
* *
8868 ATAATCTATGTT-ACTCAAAAATACAGAAAA-AAGTTAAACATAAAATCAATTTTGAGATAAT-A
64 ATAATCCATGTTAAC-CAAAAATACA-AAAACAAATTAAACATAAAATCAATTTTGAGATAATAA
*
8930 AATCACTTAAAGTGAGTACTAAGAATTTTAAAAGATTGGGTGGCTAT
127 AACCACTTAAAGTGAGTACTAAGAATTTTAAAAGATTGGGTGGCTAT
* * * *
8977 AAATAGAATTTTCTTACAAATGAATGCTTTGTTCTTCACATTTCTCATGGTAGATATTCAATTAT
1 AAATAGAATTTTCTTACAAATGAATGCTTTGTTCTCCACATTTCTCAAGGTAGAAAATCAATTAT
* * * * * *
9042 AGTCCGTTTTAACCAAAAATATAAAAACAAATTGAACATAAAATCAATTTTGAGGTAATAAAACC
66 AATCCATGTTAACCAAAAATACAAAAACAAATTAAACATAAAATCAATTTTGAGATAATAAAACC
*
9107 ATTTAAAGTGA
131 ACTTAAAGTGA
9118 NNNNNNNNNN
Statistics
Matches: 118, Mismatches: 18, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
171 10 0.08
172 92 0.78
173 16 0.14
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.35
Consensus pattern (173 bp):
AAATAGAATTTTCTTACAAATGAATGCTTTGTTCTCCACATTTCTCAAGGTAGAAAATCAATTAT
AATCCATGTTAACCAAAAATACAAAAACAAATTAAACATAAAATCAATTTTGAGATAATAAAACC
ACTTAAAGTGAGTACTAAGAATTTTAAAAGATTGGGTGGCTAT
Found at i:9950 original size:340 final size:337
Alignment explanation
Indices: 8065--10432 Score: 1159
Period size: 342 Copynumber: 6.9 Consensus size: 337
8055 NNNNNNNNNN
* * * * *
8065 GAGATTATAAAACAATTTAAAGAGAGTAATAAGGCTTTTGAAGGAA-GAGGTGACTATAAATAGA
1 GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAAGAATG-GGAGACTATAAATGGA
* * * * * * *
8129 CTTTTCCTGCC-AATGAAAGCCTTTTTCTTCACA-TTCTCGATGTAGACATTCAATTATAATCTG
65 CTTTT-CTTCCTAATGAATGCATTTTTC--CACATTTCT-AAGGCAGACATTCAATTATAGTCTG
** * * * * * * * *
8192 TTTTAACCAAAAATATAAAAAAAATTTAACTCAAAATCAATTTTGAGAGTATACAACTATTTAAA
126 TTTTAATGAAAAATGT--AAAAAGTTCAACTTAAAATCAATTATGAGACTATAAAACCATTTAAA
********** * * *
8257 GTGAGTAATAAGGCTTTTGAAGNNNNNNNNNNCTATAAATGGACTTTTCTTACTAATGAATGCTT
189 GTGAGTAATAAGG-TTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATAAATGCCT
* * ** * * * * * * * *
8322 TTTTCTTCATGTTTTTTGAGG-TAGACATCCAATGATAGTCTGTTTTAAACAAAAATTTTAAAAA
253 TTTTCTACATGTTTCTCAAGGCAAG-CATTCAATTATAATCTATTTTAACCAAAAATGTAAAAAA
* **
8386 ATTTAATTTAAAATCAATTAT
317 ATTGAACCTAAAATCAATTAT
********** * * * * * * *
8407 GAGATNNNNNNNNNNTTTAAAGCGAGTAATAAGACTTTTGAAGGAGTGGGAGACAATAAATGAAA
1 GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAAGAATGGGAGACTATAAATGGAC
* * *
8472 TTTTCTT-CTCAATGAATAGC-TTTTTCTACACATTTCATGAGGTAGACATTCAATTATAGTATG
66 TTTTCTTCCT-AATGAAT-GCATTTTTC--CACATTTC-TAAGGCAGACATTCAATTATAGTCTG
* * **
8535 TTTTAATGAAAAATGTAATGAAA-TTCAACTTCAAATGAATTATGAGTTTATAAAACCATTTAAA
126 TTTTAATGAAAAATGTAA--AAAGTTCAACTTAAAATCAATTATGAGACTATAAAACCATTTAAA
********** * ** * * * * ** *
8599 GNNNNNNNNNNGGCTTTTGAAAGCTTGAGTGACTATAAATGGACATTTCGTGCCAATGGATGGCT
189 GTGAGTAATAAGG-TTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATAAATGCCT
* * * ** * *
8664 TTTGTGCTGCAATG--CCT-AAGGCAAACATTCAATTATAGCCTTTTTTAACCAAAAATAT-AAA
253 TTT-T-CTAC-ATGTTTCTCAAGGCAAGCATTCAATTATAATCTATTTTAACCAAAAATGTAAAA
* * *
8725 AAATTCAACTTAAAATCAATTAN
315 AAATTGAACCTAAAATCAATTAT
********* * * ** * *
8748 NNNNNNNNNAAACCATTTAAAGTGAGTAATAGGGCTTTTGAAGGAATGAAAGACTACAAATAGAC
1 GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAAGAATGGGAGACTATAAATGGAC
* * ** * * * * *
8813 TTTTCTTGAC-AATGAATGTCTTTTTCTCCATGTTTCTTAAGGTAGAAAATCAATTATAATCTAT
66 TTTTCTT-CCTAATGAATG-CATTTT-TCCACATTTC-TAAGGCAGACATTCAATTATAGTCTGT
* * * * * * * * *
8877 GTTACTCAAAAATACAGAAAAAAGTTAAACATAAAATCAATTTTGAGA-TA-ATAAATCACTTAA
127 TTTAATGAAAAAT---GTAAAAAGTTCAACTTAAAATCAATTATGAGACTATA-AAACCATTTAA
* * * * * * * * * *
8940 AGTGAGTACTAAGAATTTTAAAAGATTGGGTGGCTATAAATAGAATTTTCTTACAAATGAATG-C
188 AGTGAGTAATAAG-GTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATAAATGCC
* ** * * * * ** *
9004 TTTGTTCTTCACATTTCTCATGG-TAGATATTCAATTATAGTCCGTTTTAACCAAAAATATAAAA
252 TTT-TTCTACATGTTTCTCAAGGCAAG-CATTCAATTATAATCTATTTTAACCAAAAATGT-AAA
* *
9068 ACAAATTGAACATAAAATCAATTTT
314 A-AAATTGAACCTAAAATCAATTAT
* * ****************************
9093 GAGGTAATAAAACCATTTAAAGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATAAATGGAC
1 GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAAGAATGGGAGACTATAAATGGAC
* * * ** * *
9158 TTTTCTT-GTCAATGAATGCTTTTTTTTTCATGTTTCTCAAGGCAAACATTCAATTATAGGT-TT
66 TTTTCTTCCT-AATGAATGC--ATTTTTCCACATTTCT-AAGGCAGACATTCAATTATA-GTCTG
* ** * * * * * * * * *
9221 TTTTGACAAAAAATATAAAAAAAATTGAACATAGACTCAATTCTGAGA-TAATAAAACTAGTTAA
126 TTTTAATGAAAAATGT--AAAAAGTTCAACTTAAAATCAATTATGAGACT-ATAAAACCATTTAA
*********
9285 AGTGAGTAATANNNNNNNNNNAGGAATGGGTGACTAT-AATGGACTTTTCTTACCAATAAATGCC
188 AGTGAGTAATA-AGGTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATAAATGCC
* ** * * *
9349 TTTTTCATA-ACGTTTCTTGAGGC-AGACATTCAATTATAATTTATTTTATCCAATAATGTAAAA
252 TTTTTC-TACATGTTTCTCAAGGCAAG-CATTCAATTATAATCTATTTTAACCAAAAATGTAAAA
*
9412 AAATTGAACCTAAAATCAATAAT
315 AAATTGAACCTAAAATCAATTAT
* * * * *
9435 GAGGTTATAAAATCATTTAAAGTGTGTAATAAGGCTTTTG-ATGAAATGGGAGATTATAAATGGA
1 GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAAG-AATGGGAGACTATAAATGGA
* ** * * *
9499 CTTTTCTTGCTAATGAATGTTTTTTTTTCACGTTTTCTAAGGTAGACATTCAATTATAGTCTGTT
65 CTTTTCTTCCTAATGAATG-CATTTTTCCAC-ATTTCTAAGGCAGACATTCAATTATAGTCTGTT
* * * * *
9564 TTCATGAAAAATATAAAAAATTCAACTTAAAATCAATTACGAGACTATAAAACCTTTTAAAGTGA
128 TTAATGAAAAATGTAAAAAGTTCAACTTAAAATCAATTATGAGACTATAAAACCATTTAAAGTGA
* * *
9629 GTAGTAAGGCTTTTGAAGAAATGGGTGACTATAAATGGACTTTTCTT-CCAAATAAATGGGC-TT
193 GTAATAAGG-TTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACC-AATAAAT-GCCTTT
* * ** *
9692 TTCTACATGTTTCTCAAGGCAAGCATTTAATTATAGTCTATTTTAATGAAAAATGT-AAATAATT
255 TTCTACATGTTTCTCAAGGCAAGCATTCAATTATAATCTATTTTAACCAAAAATGTAAAAAAATT
* *
9756 CAACTTAAAATCAATTAT
320 GAACCTAAAATCAATTAT
* * **
9774 GAGATTATAAAACCAGTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGAAAGACTATAAATGGAC
1 GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAAGAATGGGAGACTATAAATGGAC
* * ** * * *
9839 TTTTCTTCCTAATAAACGGGTTTTTCCACATATATCCCAAGGCAGGCATTCAATTATAGTTTGTT
66 TTTTCTTCCTAATGAATGCATTTTTCCACAT-T-T-CTAAGGCAGACATTCAATTATAGTCTGTT
* *
9904 TTAATGAAAAATGTTAAAAGTTCAGCTTAAAATCAATTATGAGACTATAAAACCATTTAAAGTGA
128 TTAATGAAAAATGTAAAAAGTTCAACTTAAAATCAATTATGAGACTATAAAACCATTTAAAGTGA
* * * *** *
9969 GTAATAGGGGTTTTGAAGGAATGGGTGACCATAAATGGACTTTTATTGTGAATGAATGCCTTTTT
193 GTAATA-AGGTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATAAATGCCTTTTT
* * * * * * * *
10034 CTTCATGTTGCAT-GAGG-TAGATATTCAATTATAATATGTTTTAACCAATAATGTAAAAGAAAA
257 CTACATGTTTC-TCAAGGCAAG-CATTCAATTATAATCTATTTTAACCAAAAATGT-AAA-AAAA
*
10097 TTGATCCTAAAATCAATTAT
318 TTGAACCTAAAATCAATTAT
* * * *
10117 GAGATTATAAAACCATTTAAATTGAGTAATAAGGCCTTTGAAGGAATGGGTGACTATAAATGGAC
1 GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAAGAATGGGAGACTATAAATGGAC
* * *
10182 TTTTCTTGCC-AATGAATTCATTTTTCTTCACACTTTTTAAGGTCA-ACATTCAATTATTGTCTG
66 TTTTCTT-CCTAATGAATGCATTTTTC--CACA-TTTCTAAGG-CAGACATTCAATTATAGTCTG
* *
10245 TTTTAACT-AAAGAA-GTAAAAAAAAGTTAAACTTAAAATCAATTTTGAG-CTTATAAAACCATT
126 TTTTAA-TGAAA-AATGT---AAAAAGTTCAACTTAAAATCAATTATGAGAC-TATAAAACCATT
** * *
10307 TAAAGTGAGTAATAAGGTTATTGAAGGAATGGAACG-CTATAAATGGACTTTTCTTGCCAATGAA
185 TAAAGTGAGTAATAAGGTT-TTGAAGGAATGG-GTGACTATAAATGGACTTTTCTTACCAATAAA
** * * * * * *
10371 TGTATTTCTCTTCATGTTTCTCAAGGTAAACATTCAATTATAGTCTGTTTTAACCAAAAATG
248 TGCCTTTTTCTACATGTTTCTCAAGGCAAGCATTCAATTATAATCTATTTTAACCAAAAATG
10433 NNNNNNNNNN
Statistics
Matches: 1520, Mismatches: 422, Indels: 164
0.72 0.20 0.08
Matches are distributed among these distances:
337 1 0.00
338 9 0.01
339 160 0.11
340 242 0.16
341 179 0.12
342 334 0.22
343 198 0.13
344 107 0.07
345 146 0.10
346 142 0.09
347 2 0.00
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.34
Consensus pattern (337 bp):
GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAAGAATGGGAGACTATAAATGGAC
TTTTCTTCCTAATGAATGCATTTTTCCACATTTCTAAGGCAGACATTCAATTATAGTCTGTTTTA
ATGAAAAATGTAAAAAGTTCAACTTAAAATCAATTATGAGACTATAAAACCATTTAAAGTGAGTA
ATAAGGTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATAAATGCCTTTTTCTAC
ATGTTTCTCAAGGCAAGCATTCAATTATAATCTATTTTAACCAAAAATGTAAAAAAATTGAACCT
AAAATCAATTAT
Found at i:10145 original size:173 final size:171
Alignment explanation
Indices: 8065--10432 Score: 1477
Period size: 170 Copynumber: 13.8 Consensus size: 171
8055 NNNNNNNNNN
* * *
8065 GAGATTATAAAACAATTTAAAGAGAGTAATAAGGCTTTTGAAGGAA-GAGGTGACTATAAATAGA
1 GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATG-GGTGACTATAAATGGA
* * ** * * *
8129 CTTTTCCTGCCAATGAAAGCCTTTTTCTTCA-CATTCTCGATGTAGACATTCAATTATAATCTGT
65 CTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCT-AAGGTAGACATTCAATTATAGTCTGT
* * * *
8193 TTTAACCAAAAATATAAAAAAAATTTAACTCAAAATCAATTTT
129 TTTAACCAAAAATGTAAAAAAAATTCAACTTAAAATCAATTAT
* * * **********
8236 GAGAGTATACAACTATTTAAAGTGAGTAATAAGGCTTTTGAAGNNNNNNNNNNCTATAAATGGAC
1 GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGAC
* * * * * * *
8301 TTTTCTTACTAATGAATGCTTTTTTCTTCATGTTTTTTGAGGTAGACATCCAATGATAGTCTGTT
66 TTTTCTTGCCAATGAATGCCTTTTTCTTCATG-TTTCTAAGGTAGACATTCAATTATAGTCTGTT
* ** * *
8366 TTAAACAAAAAT-TTTAAAAAATTTAATTTAAAATCAATTAT
130 TTAACCAAAAATGTAAAAAAAATTCAACTTAAAATCAATTAT
********** * * * * * * *
8407 GAGATNNNNNNNNNNTTTAAAGCGAGTAATAAGACTTTTGAAGGAGTGGGAGACAATAAATGAAA
1 GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGAC
* ** * *
8472 TTTTCTT-CTCAATGAATAG-CTTTTTCTACACATTTCATGAGGTAGACATTCAATTATAGTATG
66 TTTTCTTGC-CAATGAAT-GCCTTTTTCTTCATGTTTC-TAAGGTAGACATTCAATTATAGTCTG
** ** * *
8535 TTTTAATGAAAAATGT-AATGAAATTCAACTTCAAATGAATTAT
128 TTTTAACCAAAAATGTAAAAAAAATTCAACTTAAAATCAATTAT
* ********** * ** *
8578 GAGTTTATAAAACCATTTAAAGNNNNNNNNNNGGCTTTTGAAAGCTTGAGTGACTATAAATGGAC
1 GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGAC
* * * * * * * * * *
8643 ATTTCGTGCCAATGGATGGCTTTTGTGCTGCAATG--CCTAAGGCAAACATTCAATTATAGCCTT
66 TTTTCTTGCCAATGAATGCCTTTT-T-CTTC-ATGTTTCTAAGGTAGACATTCAATTATAGTCTG
* *
8706 TTTTAACCAAAAA--TATAAAAAATTCAACTTAAAATCAATTAN
128 TTTTAACCAAAAATGTAAAAAAAATTCAACTTAAAATCAATTAT
********* * *** * *
8748 NNNNNNNNNAAACCATTTAAAGTGAGTAATAGGGCTTTTGAAGGAATGAAAGACTACAAATAGAC
1 GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGAC
* * * * * * * *
8813 TTTTCTTGACAATGAATGTCTTTTTCTCCATGTTTCTTAAGGTAGAAAATCAATTATAATCTATG
66 TTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTC-TAAGGTAGACATTCAATTATAGTCTGTT
** * * * *
8878 TT-ACTCAAAAATACAGAAAAAAGTTAAACATAAAATCAATTTT
130 TTAAC-CAAAAATGTA-AAAAAAATTCAACTTAAAATCAATTAT
* * * * ** * * * * * *
8921 GAGATAAT-AAATCACTTAAAGTGAGTACTAAGAATTTTAAAAGATTGGGTGGCTATAAATAGAA
1 GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGAC
* * ** * * *
8985 TTTTCTTACAAATGAATG-CTTTGTTCTTCACATTTCTCATGGTAGATATTCAATTATAGTCCGT
66 TTTTCTTGCCAATGAATGCCTTT-TTCTTCATGTTTCT-AAGGTAGACATTCAATTATAGTCTGT
* * * *
9049 TTTAACCAAAAATATAAAAACAAATTGAACATAAAATCAATTTT
129 TTTAACCAAAAATGTAAAAA-AAATTCAACTTAAAATCAATTAT
* * ****************************
9093 GAGGTAATAAAACCATTTAAAGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATAAATGGAC
1 GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGAC
* * * * * *
9158 TTTTCTTGTCAATGAATGCTTTTTTTTTCATGTTTCTCAAGGCAAACATTCAATTATAGGT-TTT
66 TTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCT-AAGGTAGACATTCAATTATA-GTCTGT
* * * * * * * *
9222 TTTGACAAAAAATATAAAAAAAATTGAACATAGACTCAATTCT
129 TTTAACCAAAAATGTAAAAAAAATTCAACTTAAAATCAATTAT
* * * **********
9265 GAGATAATAAAACTAGTTAAAGTGAGTAATANNNNNNNNNNAGGAATGGGTGACTAT-AATGGAC
1 GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGAC
* * * * * * * * * *
9329 TTTTCTTACCAATAAATGCCTTTTTCATAACGTTTCTTGAGGCAGACATTCAATTATAATTTATT
66 TTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTC-TAAGGTAGACATTCAATTATAGTCTGTT
* * * * *
9394 TTATCCAATAATGT-AAAAAAATTGAACCTAAAATCAATAAT
130 TTAACCAAAAATGTAAAAAAAATTCAACTTAAAATCAATTAT
* * * * * * *
9435 GAGGTTATAAAATCATTTAAAGTGTGTAATAAGGCTTTTGATGAAATGGGAGATTATAAATGGAC
1 GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGAC
* * * *
9500 TTTTCTTGCTAATGAATG-TTTTTTTTTCACGTTTTCTAAGGTAGACATTCAATTATAGTCTGTT
66 TTTTCTTGCCAATGAATGCCTTTTTCTTCATG-TTTCTAAGGTAGACATTCAATTATAGTCTGTT
* ** * *
9564 TTCATGAAAAA--TATAAAAAATTCAACTTAAAATCAATTAC
130 TTAACCAAAAATGTAAAAAAAATTCAACTTAAAATCAATTAT
* * * *
9604 GAGACTATAAAACCTTTTAAAGTGAGTAGTAAGGCTTTTGAAGAAATGGGTGACTATAAATGGAC
1 GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGAC
* * * * *
9669 TTTTCTT-CCAAATAAATGGGC-TTTTCTACATGTTTCTCAAGGCA-AGCATTTAATTATAGTCT
66 TTTTCTTGCC-AATGAAT-GCCTTTTTCTTCATGTTTCT-AAGGTAGA-CATTCAATTATAGTCT
* ** *
9731 ATTTTAATGAAAAATGT--AAATAATTCAACTTAAAATCAATTAT
127 GTTTTAACCAAAAATGTAAAAAAAATTCAACTTAAAATCAATTAT
* * * ***
9774 GAGATTATAAAACCAGTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGAAAGACTATAAATGGAC
1 GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGAC
* * ** ** * * * * * *
9839 TTTTCTT-CCTAATAAACGGGTTTTTCCACATATATCCCAAGGCAGGCATTCAATTATAGTTTGT
66 TTTTCTTGCC-AATGAATGCCTTTTTCTTCATGT-TTCTAAGGTAGACATTCAATTATAGTCTGT
** * * *
9903 TTTAATGAAAAATGT--TAAAAGTTCAGCTTAAAATCAATTAT
129 TTTAACCAAAAATGTAAAAAAAATTCAACTTAAAATCAATTAT
* * * *
9944 GAGACTATAAAACCATTTAAAGTGAGTAATAGGGGTTTTGAAGGAATGGGTGACCATAAATGGAC
1 GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGAC
* ** * * * * *
10009 TTTTATTGTGAATGAATGCCTTTTTCTTCATGTTGCATGAGGTAGATATTCAATTATAATATGTT
66 TTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTC-TAAGGTAGACATTCAATTATAGTCTGTT
* * * *
10074 TTAACCAATAATGTAAAAGAAAATTGATCCTAAAATCAATTAT
130 TTAACCAAAAATGTAAAA-AAAATTCAACTTAAAATCAATTAT
* *
10117 GAGATTATAAAACCATTTAAATTGAGTAATAAGGCCTTTGAAGGAATGGGTGACTATAAATGGAC
1 GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGAC
* * ** * *
10182 TTTTCTTGCCAATGAATTCATTTTTCTTCACACTTTTTAAGGTCA-ACATTCAATTATTGTCTGT
66 TTTTCTTGCCAATGAATGCCTTTTTCTTCA-TGTTTCTAAGGT-AGACATTCAATTATAGTCTGT
* * *
10246 TTTAACTAAAGAA-GTAAAAAAAAGTTAAACTTAAAATCAATTTT
129 TTTAACCAAA-AATGTAAAAAAAA-TTCAACTTAAAATCAATTAT
* **
10290 GAGCTTATAAAACCATTTAAAGTGAGTAATAAGG-TTATTGAAGGAATGGAACG-CTATAAATGG
1 GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT-TTGAAGGAATGG-GTGACTATAAATGG
** * *
10353 ACTTTTCTTGCCAATGAATGTATTTCTCTTCATGTTTCTCAAGGTAAACATTCAATTATAGTCTG
64 ACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCT-AAGGTAGACATTCAATTATAGTCTG
10418 TTTTAACCAAAAATG
128 TTTTAACCAAAAATG
10433 NNNNNNNNNN
Statistics
Matches: 1670, Mismatches: 471, Indels: 110
0.74 0.21 0.05
Matches are distributed among these distances:
167 3 0.00
168 5 0.00
169 106 0.06
170 522 0.31
171 401 0.24
172 236 0.14
173 385 0.23
174 12 0.01
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.34
Consensus pattern (171 bp):
GAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGAC
TTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTAAGGTAGACATTCAATTATAGTCTGTTT
TAACCAAAAATGTAAAAAAAATTCAACTTAAAATCAATTAT
Found at i:13747 original size:170 final size:170
Alignment explanation
Indices: 12128--15917 Score: 2792
Period size: 171 Copynumber: 22.3 Consensus size: 170
12118 NNNTTTAACT
* * * ** *
12128 AAAAATATAAAAAAATTAAACTTAAAATTAATTTTGAGATTATAAAATGATTTAAAGTGAGTAAT
1 AAAAATGTAAAAAAATT-AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * * * *
12193 AAGGCTTTTGAGGGAATCGGAGACTATAAATGGACTCTTCTT-CTCACTGAAT-TTCTTTTTCTA
65 AAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGC-CAATGAATGCT-TTTTTCTT
* * * * * *
12256 CACGTTTATAAAGGCAAACATTCAATTATAGTCCGTTTTAATG
128 CATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAATG
* * * *
12299 AAAAATGTAAAAAAATACAACTTAAAATTAATAATGAGATTATAAAACTATTTAAAGCGAGTAAT
1 AAAAATGTAAAAAAAT-TAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * * * * *
12364 AAAG--ATTGAGGGAATGGGTGATTATAAATGGA-----CTTGCCAATAAATGCCTTTTTCTTCA
65 AAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTTTCTTCA
** * * **
12422 CATTTCTCAAAGTAGACATTCAATTATAATCTGTTTTAACC
130 TGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAATG
* * * * *
12463 AATAATGTAAAAAAAAATTAAACCTAAAATCAATTATGAGATTATAAAAACTTTTAAAGTGAGTA
1 AAAAATGT--AAAAAAATT-AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTA
* * * * * *
12528 CTAGGGCATTTGAAGGAATGAGAAACTATAAATAGACTTTTCTTGCCAATGAAAT--TTTTTTCT
63 ATAAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGCCAATG-AATGCTTTTTTCT
* * * * * * * *
12591 TTACGTCTCTCGATGTAGACATTCAATTATAATCTATTTTGA-G
127 TCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAATG
* * * *
12634 CAAAAAAGAAAAAAAAATTGAACTTAAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTA
1 -AAAAATG-TAAAAAAATT-AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTA
* * * * * * * * *
12699 TTAAGACTTTTAAAGGAATGGGTGACTATAAATGGACTTTTCCTGTCAATAAATTCATTTTTCTT
63 ATAAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTTTCTT
* *
12764 CATGTTT-TCAAGGTAAACAATT-AACTATAGTCT-TTTTAACT-
128 CATGTTTCTCAAGGTAGAC-ATTCAATTATAGTCTGTTTTAA-TG
* * * *
12805 AAAAATGTAAAAAAATTGAACTTAAAATTAATTTTGAGATTATAAAGCCATTTAAA-CTAAGTAA
1 AAAAATGTAAAAAAATT-AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGC-GAGTAA
** * * * *
12869 TAAGGCTTTTGAAAAAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTCTCTTT
64 TAAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTTTCTTC
* ** * * * **
12934 ACGTTTCTTGAGGTAGACATTCAATTATAATTTGTTTGAACC
129 ATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAATG
* * *
12976 AAAAATGTAAATAAAATTGAACCTAAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAA
1 AAAAATGTAAA-AAAATT-AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAA
* ** * ** * * *
13041 TAAGGCTTTTGAAAGAATAAGTGACTATAAATAAAC-TTTCTTACCAATGAATGCATTTCTCTTC
64 TAAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTTTCTTC
* * * **
13105 ATGTTTCTTAAGGTAAACCTTCAATTATAGTCTGTTTTAACC
129 ATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAATG
* * *
13147 AAAAATTTAAAAACATTTAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGCGAGTAAT
1 AAAAATGTAAAAA-AATTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * *
13212 AAGG-TTTTGAAGAAATGAGAGACTATAAATGGACTTTTCTT-CTCAATAAATGAC--TTTTCTA
65 AAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGC-CAATGAATG-CTTTTTTCT-
* * **
13273 T-ATGTTTC-CTAAGGCAGGCAGACAATTATAGTCTGTTTTAATG
127 TCATGTTTCTC-AAGGTAGACATTCAATTATAGTCTGTTTTAATG
*
13316 AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAGCCATTTAAAGCGAGTAAT
1 AAAAATGTAAAAAAATT-AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * * *
13381 AAGGCTTTTAAAGGAATGAGTGACTATAAATGGACTTTTCTTGCCAACGAATGCCTTTTTCTTCA
65 AAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTTTCTTCA
* * * * * **
13446 TGTTT-TTAAAGTAGACATTCACTTATAATCTATTTTAAAC
130 TGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAATG
* * *
13486 AATAATGTAAAACAAATTTAACCTAAAATCAATTATGAGATTATAAAATCATTTAAAGCGAGTAA
1 AAAAATGTAAAA-AAA-TTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAA
* * * * * *
13551 TAAAGCTTTTGAAGGAATAGGAGACTATATATAGAATTTTTTTGCCAAT-AATGCTTTTTTCTTC
64 TAAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTTTCTTC
** * *
13615 ACATTTCTCAAGGTAGAAATTCAATTATAGTCTGTTTCAATG
129 ATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAATG
* * * * * * *
13657 AAAAATGTAAAAACAATTTACTTAAAATTAATTATAAGATAACAAAACCTTTTAAAGCGAGTATT
1 AAAAATGTAAAAA-AATTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * ** *
13722 AAGGCTTTCGAAGGAATGGGAGACTATAAATGGAGTTTTCTTGCCAACGAATGCCCTTCTCTTCA
65 AAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTTTCTTCA
* * * *
13787 TGTTGCTCAATGTAGACAGTCAATTATAATCTGTTTTAACT-
130 TGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAA-TG
* *
13828 AAAAAAGT-AAAAAA--AA--TAAAATC-ATT-TGAGATAATATAAACCAATTTAAAGTCGAGTA
1 AAAAATGTAAAAAAATTAACTTAAAATCAATTATGAGATTATA-AAACC-ATTTAAAG-CGAGTA
* *
13886 ATAA-GC-TTTGAAAGAATGGGTGAC--TAAATGGACTTTTCTTGCCAATGAATGGC-TTTTTCT
63 ATAAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGCCAATGAAT-GCTTTTTTCT
* * * * * *
13946 TTATGTTTCTCGATGTAGATATTCAATTATAATCTATTTTAACT-
127 TCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAA-TG
* * * * * * *
13990 AAAAAAGTAAAAAAAAATGACCTTAAAATCAATTTTGAGATTATAAAACTATTTAAAGTGAATAA
1 AAAAATGT--AAAAAAATTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAA
* * * * **
14055 TAAGGCTTTTAAAGGAATAGGAGACTATAAATGGACTTTTATT-CCAAATAAATGAGGTTTTT-T
64 TAAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGCC-AATGAATG-CTTTTTTCT
** * * *
14118 AAATGTTTCTCGAGGTA-AGTATTCAATTATAGTCTGTTTTATTG
127 TCATGTTTCTCAAGGTAGA-CATTCAATTATAGTCTGTTTTAATG
* * * * *
14162 AAAACTGT-TAAAAATTCAACTTAAAATCAATTTTAAGATTATAAAACCATTTAAAGTGAGTAAT
1 AAAAATGTAAAAAAATT-AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * * * *
14226 AAGGCTTTTGAAGGAATGAGAGAATATAAATGGACTTTTCTTTCAAATGAATGGGTTTTTTCAT-
65 AAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGCCAATGAAT-GCTTTTTTCTTC
* * * *
14290 ACGTTTTTCGAGGTA-AGCATTCAACTATAGTCTGTTTTAATG
129 ATGTTTCTCAAGGTAGA-CATTCAATTATAGTCTGTTTTAATG
* * * *
14332 AAAAATAT-AAAACATTCAGCTTAAAATCAATTATGAGATTATAAAACCTTTTAAAGCGAGTACA
1 AAAAATGTAAAAAAATT-AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTA-A
* * * * * *
14396 -AAGACTTTTGAAGAAAT-TGATGACTATAAATGGACTTTTCTTGCGAAT-ATATTCTTTTTACT
64 TAAGGCTTTTGAAGGAATGGGA-GACTATAAATGGACTTTTCTTGCCAATGA-ATGCTTTTTTCT
* * * * *
14458 TCACAG-TTCTCGATGTAGACATTCAATTATAATCTGATTTAACT-
127 TCA-TGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAA-TG
* * * * * * *
14502 AAAAATGCCAAACAAATTGAACTTAAAATCAATTTTTAGATTATAAAATCATTTCAAGTGAGTAA
1 AAAAATG-TAAAAAAATT-AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAA
* * * *
14567 TAAGACTTTT-AATGAAATGGGAGACTATAAATGGACTATTCTTGCCAATGAATGTTTTTTTCTT
64 TAAGGCTTTTGAA-GGAATGGGAGACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTTTCTT
* **
14631 CATGTTTCTCAAGGTTGACATTCAATTATAGTCTGTTTTAACA
128 CATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAATG
* ********** *
14674 AAAAATATAAAAAAATTTNNNNNNNNNNCAATTATGAGATTATAAAACCATTTAAAGCGAGTACT
1 AAAAATGTAAAAAAA-TTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * * ** * *
14739 AAGGCTTTGGAAGGAATAGGTGACTATAAATAGACTTTTCTTGCTGATGAATGCGTTTCTCTTCA
65 AAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTTTCTTCA
* * * *
14804 TGTTTCTCAAGGTAAACCTTCAATTATAGTCTATTTTAATA
130 TGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAATG
* * ************
14845 AAAAATGTAAAAACATTCAACTTAAAATTAANNNNNNNNNNNCAAAACCATTTAAAGCGAGTAAT
1 AAAAATGTAAAAAAATT-AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* ** *
14910 AAGGCTTTTGAAAGAATGGGAGACTATAAATAAACTTTTCTT-CTCAATGAATGGC-TTTTTCTA
65 AAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGC-CAATGAAT-GCTTTTTTCTT
* * *
14973 CATGTTTC-CTAAGGTAGGC-TGACAATTATAATCTGTTTTAATG
128 CATGTTTCTC-AAGGTAGACAT-TCAATTATAGTCTGTTTTAATG
* * * * *
15016 AAAAAAGTAAAAAAAAATAAATTTAAAATCAATTATGAGATTATAAAACCATTTAAAGAGAGTAG
1 AAAAATGT--AAAAAAATTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAA
* * * * *
15081 TAAGACTTTTGAAGGAATGAGAGACTATAAATAGACTTGTTC-TGCTAATGAAT-TTATTTTTCT
64 TAAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTT-TTCTTGCCAATGAATGCT-TTTTTCT
* * * *
15144 TCAAGTTTCTCAAGGTAGATATTCAACTATAGTCTATTTTAATG
127 TCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAATG
********* * *
15188 AAAAATGT-AAAAAATTNNNNNNNNNNTCAATTATGAGATAATAAAACCATTTGAAGCGAGTAAT
1 AAAAATGTAAAAAAATT-AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * * * * *
15252 AAGACTTTTGATA-GAATGGGTGACAATAAATAGACTTTTCTGGCTAAGGAATGAC-TTTTTCTT
65 AAGGCTTTTGA-AGGAATGGGAGACTATAAATGGACTTTTCTTGCCAATGAATG-CTTTTTTCTT
* * * * * ** **
15315 CAGGTTTCTTAAGCTAAACATTCAATTATAATCTACTTTAACC
128 CATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAATG
* * * * ** * *
15358 AAAAATG-AGAAAACATTCAACTAAAAATTAATTATGAGTTTATAGCACCATTTATAGCAAGTAA
1 AAAAATGTA-AAAAAATT-AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAA
*************** * * ** * *
15422 TAAGNNNNNNNNNNNNNNNNGTA-ACAATAAATGGA-TATTTAGTGCCAATAAATAGC-TTTTGC
64 TAAG-GCTTTTGAAGGAATGGGAGACTATAAATGGACT-TTTCTTGCCAATGAAT-GCTTTTTTC
** * * * * * *
15484 TTCACATTCCCCAAGGCAGACATTCAATTATAGCCTTCTTTTACT-
126 TTCATGTTTCTCAAGGTAGACATTCAATTATAGTC-TGTTTTAATG
* **********
15529 AAAAATGCAAAAAAAAATTAACTTAAAATCAATTATGNNNNNNNNNNACCATTTAAAGCGAGTAA
1 AAAAATG--TAAAAAAATTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAA
* ** * * * * *
15594 TAACGCTTTTGAAGGAATGAAAGACTACAAATAGACTTTTCTTCCCAATGAATGGCTTATTT-TA
64 TAAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGCCAATGAAT-GCTTTTTTCTT
* * * * * * *
15658 CACGTTTCT-AGATGCAAACATTC-ATCTATAGTATGTTTTACTA
128 CATGTTTCTCA-AGGTAGACATTCAAT-TATAGTCTGTTTTAATG
* * * * * *
15701 AAAAATGTTAAAACATTCAACTTAAAATCAATTTTGAGATTATAAAACCATTTTAAGAGTGTAAT
1 AAAAATGTAAAAAAATT-AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
* * * * * *
15766 AAGGCTTTTGAAAGAAAGAGAGACTATAAATGGACCTTTCTTGCCAATGAATGCCTTTTTCTTTA
65 AAGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTTTCTTCA
* * * **
15831 TGTTTCT-TATGTAGACATTCAATTATAATCTGTTTTAACC
130 TGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAATG
* * * *
15871 AATAAA-GTAAGACAAATTAAACCTAAAATCAATTTTGAGACTATAAA
1 AA-AAATGTAA-AAAAATT-AACTTAAAATCAATTATGAGATTATAAA
15918 TGAGCTTTTC
Statistics
Matches: 2854, Mismatches: 636, Indels: 258
0.76 0.17 0.07
Matches are distributed among these distances:
162 75 0.03
163 10 0.00
164 79 0.03
165 22 0.01
166 58 0.02
167 2 0.00
168 32 0.01
169 305 0.11
170 722 0.25
171 949 0.33
172 555 0.19
173 41 0.01
174 4 0.00
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.34
Consensus pattern (170 bp):
AAAAATGTAAAAAAATTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
AGGCTTTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTTTCTTCAT
GTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAATG
Found at i:16453 original size:171 final size:169
Alignment explanation
Indices: 15965--16673 Score: 782
Period size: 171 Copynumber: 4.2 Consensus size: 169
15955 TTTCTCATCA
* * ** * * * * *
15965 TAGACATTCAATTATAATGTGTTTTAACCATAAAA-GGAAAAAAATGAACTTAATATCAGTTTTG
1 TAGACATTCAATTATAATTTGTTTTAACTA-AAAATATAAAAAAATTAACATAAAATCAATTATG
* * *
16029 AGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGACT
65 AGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATAGACT
* * *
16094 TTTCTTGCCAATGAATACCTTTTTCTTCATGTTTCTTTAGG
130 TTTCTTGCCAATGAAT-GCTTTTTCTTCACGTTTCTTGAGG
* * *
16135 TAGACATTCGATTATAATTTGTTTTAACTAACAATATAACAAAAATTAAAATTAAAATCAATTAT
1 TAGACATTCAATTATAATTTGTTTTAACTAAAAATATAA-AAAAATTAACA-TAAAATCAATTAT
* * * *
16200 GAGATTATAAAACCATTTAAAGCGAGTAATGAGGCTTTTGAAAGAATAGAAGACTATAAATAGAC
64 GAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATAGAC
* ** *
16265 TTTTCTTGCCAATGAATGCTTTTTTCTTCATGTTTCTCAATG
129 TTTTCTTGCCAATGAATGC-TTTTTCTTCACGTTTCTTGAGG
* *
16307 TAGACATTCAATTATACTTTGTTTTAA-TAAAAACTATAAAAAAATTGAACATAAAATCAATGAT
1 TAGACATTCAATTATAATTTGTTTTAACTAAAAA-TATAAAAAAATT-AACATAAAATCAATTAT
* * * * *
16371 GAGGTTATAAAACCATTTAAAGC-ATGTAATAAGGTTTTTTAAGGAATGGGTGA-TCATAAATTG
64 GAGATTATAAAACCATTTAAAGCGA-GTAATAAGGCTTTTGAAGGAATGGGAGACT-ATAAATAG
* *
16434 ACTTTTCTT-CTCAATGAATGACTTTTTCTACACGTTTCATGAGG
127 ACTTTTCTTGC-CAATGAATG-CTTTTTCTTCACGTTTCTTGAGG
* * * * ** * * *
16478 TAAACATTCAATTATAGTCTATTTTAAGGAAAAATATAAAAAAATTTAACTTAAAATGAATTATA
1 TAGACATTCAATTATAATTTGTTTTAACTAAAAATATAAAAAAA-TTAACATAAAATCAATTATG
* * * * * *
16543 AGACTGTAAAACCATTTAAAGCGAGTAATAAGGGTTTTGAAGGAA-GGGAGACAATAAATGGACC
65 AGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATAGACT
* *
16607 TTTCTTGCCAATGAATGCCTTTTCTTCACGTTTCTTGATG
130 TTTCTTGCCAATGAATGCTTTTTCTTCACGTTTCTTGAGG
* *
16647 TAGACATTCAATTATAATCTATTTTAA
1 TAGACATTCAATTATAATTTGTTTTAA
16674 NNNNNNNNNN
Statistics
Matches: 457, Mismatches: 67, Indels: 31
0.82 0.12 0.06
Matches are distributed among these distances:
169 47 0.10
170 61 0.13
171 203 0.44
172 146 0.32
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (169 bp):
TAGACATTCAATTATAATTTGTTTTAACTAAAAATATAAAAAAATTAACATAAAATCAATTATGA
GATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAATAGACTT
TTCTTGCCAATGAATGCTTTTTCTTCACGTTTCTTGAGG
Found at i:16516 original size:343 final size:340
Alignment explanation
Indices: 16027--16662 Score: 857
Period size: 343 Copynumber: 1.9 Consensus size: 340
16017 ATATCAGTTT
*
16027 TGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGA
1 TGAGATTATAAAACCATTTAAAGTCAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGA
* * * * * * * *
16092 CTTTTCTTGCCAATGAATACCTTTTTCTTCATGTTTCTTTAGGTAGACATTCGATTATAATTTGT
66 CTTTTCTTGCCAATGAATACCTTTTTCTACACGTTTCATGAGGTAAACATTCAATTATAATCTAT
* * * *
16157 TTTAACTAACAATATAACAAAAATTAAAATTAAAATCAATTATGAGATTATAAAACCATTTAAAG
131 TTTAACGAAAAATATAA-AAAAATTAAAATTAAAATCAATTATAAGACTATAAAACCATTTAAAG
* * * *
16222 CGAGTAATGAGGCTTTTGAAAGAATAGAAGACTATAAATAGACTTTTCTTGCCAATGAATGCTTT
195 CGAGTAATAAGGCTTTTGAAAGAA-AGAAGACAATAAATAGACCTTTCTTGCCAATGAATGC-CT
*
16287 TTTCTTCATGTTTCTCAATGTAGACATTCAATTATACTTTGTTTTAATAAAAACTATAAAAAAAT
258 TTTCTTCACGTTTCTCAATGTAGACATTCAATTATACTTTGTTTTAATAAAAACTATAAAAAAAT
16352 TGAACATAAAATCAATGA
323 TGAACATAAAATCAATGA
* * * * *
16370 TGAGGTTATAAAACCATTTAAAG-CATGTAATAAGGTTTTTTAAGGAATGGGTGA-TCATAAATT
1 TGAGATTATAAAACCATTTAAAGTCA-GTAATAAGGCTTTTGAAGGAATGAGTGACT-ATAAATA
*
16433 GACTTTTCTT-CTCAATGAATGA-CTTTTTCTACACGTTTCATGAGGTAAACATTCAATTATAGT
64 GACTTTTCTTGC-CAATGAAT-ACCTTTTTCTACACGTTTCATGAGGTAAACATTCAATTATAAT
* * * * *
16496 CTATTTTAAGGAAAAATATAAAAAAATTTAACTTAAAATGAATTATAAGACTGTAAAACCATTTA
127 CTATTTTAACGAAAAATATAAAAAAATTAAAATTAAAATCAATTATAAGACTATAAAACCATTTA
* * * * *
16561 AAGCGAGTAATAAGGGTTTTGAAGGAAGGGAGACAATAAATGGACCTTTCTTGCCAATGAATGCC
192 AAGCGAGTAATAAGGCTTTTGAAAGAAAGAAGACAATAAATAGACCTTTCTTGCCAATGAATGCC
**
16626 TTTTCTTCACGTTTCTTGATGTAGACATTCAATTATA
257 TTTTCTTCACGTTTCTCAATGTAGACATTCAATTATA
16663 ATCTATTTTA
Statistics
Matches: 253, Mismatches: 36, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
340 34 0.13
341 32 0.13
342 65 0.26
343 121 0.48
344 1 0.00
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (340 bp):
TGAGATTATAAAACCATTTAAAGTCAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGA
CTTTTCTTGCCAATGAATACCTTTTTCTACACGTTTCATGAGGTAAACATTCAATTATAATCTAT
TTTAACGAAAAATATAAAAAAATTAAAATTAAAATCAATTATAAGACTATAAAACCATTTAAAGC
GAGTAATAAGGCTTTTGAAAGAAAGAAGACAATAAATAGACCTTTCTTGCCAATGAATGCCTTTT
CTTCACGTTTCTCAATGTAGACATTCAATTATACTTTGTTTTAATAAAAACTATAAAAAAATTGA
ACATAAAATCAATGA
Found at i:17178 original size:171 final size:169
Alignment explanation
Indices: 16932--19589 Score: 1429
Period size: 171 Copynumber: 15.5 Consensus size: 169
16922 TCAGCCATAG
** * * *
16932 TCTGTTTTAATGAAAAATGT-AAAACATTCAACTTAAAATCAATTATGAGATTATAATACCATTT
1 TCTGTTTTAACCAAAAATATAAAAAAATT-AACTTAAAATCAATTATGAGATTATAAAACCATTT
* * *
16996 ACAGCGAGTAATAAGGCTTTT-AGAGGAATGGGTGACTATAAATGGACTTTTCTTGCAAAATGAA
65 AAAGTGAGTAATAAGGCTTTTGA-AGGAATGGGTGACTATAAATGGACTTTTCTTGC-CAATGAA
* * * *
17060 TGCCTTTTTCTTCATGTTTCTCGAGGTATACTTTCAAGTATCA
128 TGCCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTAT-A
* * *
17103 TCTATTTTAACCAAAAATATAAAAAATTTCAAC-TAAAATCAATTATTAGATTATAAAACCATTT
1 TCTGTTTTAACCAAAAATATAAAAAAATT-AACTTAAAATCAATTATGAGATTATAAAACCATTT
* * ** * ** * * *
17167 AAAGTGAGTAATAACGCTTCTGAAATAATAGGTGACCCTAAATGAAATTTTCTTACCAATGAATG
65 AAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATG
* ** * *
17232 CTTTTTTCTTCACCTTTCTTATGGTCA-ACATTCAATTATGA
130 CCTTTTTCTTCATGTTTCTCAAGGT-AGACATTCAATTAT-A
* * * ** * *
17273 TTTGTTTTAATCAAAAATGT-AAAAGCTCTCAACTTAAAATCAATTATGAGATTATAAAATCTTT
1 TCTGTTTTAACCAAAAATATAAAAAAAT-T-AACTTAAAATCAATTATGAGATTATAAAACCATT
* ** * * * * *
17337 TGAAGCAAGTAATAAGGCTTTTCAAGAAATGGGAGATTATAAATGGACTTTTCTTGCCAGTGAAT
64 TAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAAT
*** * * *
17402 TTTTTTTTCTTCAAGTTTTTCAA-ATAGACATTCAATTATAA
129 GCCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTAT-A
* * * *
17443 TATGTTTTAACCAAAAATGTAAAAACAAATTGAACATAAAATCAATTTTG-GTATTATAAAACCA
1 TCTGTTTTAACCAAAAATAT-AAAA-AAATT-AACTTAAAATCAATTATGAG-ATTATAAAACCA
********** * *
17507 TTTAAAGTGAGTANNNNNNNNNNTGAAGGAATGAGTGACTATAAATGGACTTTTCTTTCCAATGA
62 TTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGA
* * *
17572 ATACCTTTTTCTTTACGTTTAC-CAAGGTAGACATTCAATTATAA
127 ATGCCTTTTTCTTCATGTTT-CTCAAGGTAGACATTCAATTAT-A
* * * ** * * **
17616 TTTGTTCTAACTAAAAATATAAAAACCTTCAGCCTAAAATCAATTATGAGATTATAAAATAATTT
1 TCTGTTTTAACCAAAAATATAAAAAAATT-AACTTAAAATCAATTATGAGATTATAAAACCATTT
********** * * * *
17681 ANNNNNNNNNNTAAGGCTTTTAAAGGAATAGGTGACTATAAATAGAC-TTTCTTGCCAATGAAGG
65 AAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATG
* * ** ** *
17745 TCTTTTTCTTTACATTTCTTGAGGTAGGCATTCAATTATAA
130 CCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTAT-A
* ******** * * *
17786 TCTATTTTAACCANNNNNNNNNNAAAAATTTAACTTAAAATCAATTTTGAGAGTATAAAAACCAT
1 TCTGTTTTAACCA--AAAATATAAAAAAATTAACTTAAAATCAATTATGAGATTAT-AAAACCAT
* ********** * * ** *
17851 TTAAAATGAGTAATAAGGCTTTTNNNNNNNNNNGAGACTATAAATAGACTTTTCTTATCAATGAG
63 TTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAA
* * ** * *
17916 TACTTTTTTCTTCATGTTTCTTGAGGTAGACATTAAATGATA
128 TGCCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATA
* * **********
17958 GTCTGTTTTAAACAAAAATATAAAAAAATTTAATTTAAAATCAATTATGAGANNNNNNNNNNATT
1 -TCTGTTTTAACCAAAAATATAAAAAAA-TTAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * * *
18023 TAAAGCGAGTAATAAGACTTTTGAAGGAATGGGAGACAATAAATAGAATTTTCTT-CTCAATGAA
64 TAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGC-CAATGAA
*
18087 TAG-CTTTTTCTACATGTTTCAT-AAGGTAGACATTCAATTATA
128 T-GCCTTTTTCTTCATGTTTC-TCAAGGTAGACATTCAATTATA
* * * * ********** **
18129 GTATGTTTTAA-TAGAAAATGTAAAAAAATTTAACTTAAAATGAATTNNNNNNNNNNAAAATTAT
1 -TCTGTTTTAACCA-AAAATATAAAAAAA-TTAACTTAAAATCAATTATGAGATTATAAAACCAT
* * * ** * * *
18193 TTAAAGCGAGTAATAAGGATTTTTAAGGAATGGGACACAAT-AATAGACTTTTAC-TGCCAAGGA
63 TTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTT-CTTGCCAATGA
* * * *
18256 ATGCCTTTCTCTTTACGTTTCTCAAGGTCGACATTCAATTATAA
127 ATGCCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTAT-A
* ** * * * *
18300 TCTATTTTAATAAAAAATATAAAAAAAATTAACTAAAAATTAATTATGAGTTTATAAAACTATTT
1 TCTGTTTTAACCAAAAATAT-AAAAAAATTAACTTAAAATCAATTATGAGATTATAAAACCATTT
* * * ** * * * * *
18365 AAAGCGAGTAATAAAGCTTTTGAAAGCTTGAGTGACTATAAATGCACATTTCGTCCCAATGAATG
65 AAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATG
* * *** * * * *
18430 GCTTTTGCTTCACAATGCCCAAGGAAAACATTCAATTATA
130 CCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATA
* **********
18470 GCCT-TTTCTAACCAAAAATATAAAAAAATTTAACTTAAAATCAATTATNNNNNNNNNNAACCAT
1 -TCTGTTT-TAACCAAAAATATAAAAAAA-TTAACTTAAAATCAATTATGAGATTATAAAACCAT
* **** ** * *
18534 TTAAAGTGAGTAATAGGGCTTTTGAAGGAATGAAAAACTGCAAATAGACTTTTCTTGACAATGAA
63 TTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAA
* * * *
18599 TGTCTTTTTCTTCATGTTTTTCAAGATAGACAATCAATTATAA
128 TGCCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTAT-A
* ** * * * * *
18642 TCTATTTTATGCAAAAATGTAGAAAAACATTATACATAAAATCAATTTTGAGATAATAAAACCAC
1 TCTGTTTTAACCAAAAATATA-AAAAA-ATTA-ACTTAAAATCAATTATGAGATTATAAAACCAT
* * * * * * * * *
18707 TTAAAGTGAGTACTAAGGATTTTAAAGGAATGGGTGGCTATAAATAGATTTTTTTTACAAATGAA
63 TTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAA
* ** * * *
18772 TG-CTTTGTTTTTTGTATTTCTCATGGTAGATATTCAATTATA
128 TGCCTTT-TTCTTCATGTTTCTCAAGGTAGACATTCAATTATA
* * * * *
18814 GTCTGTTTTAACCAAAAATAGAAAAACAAATTAAACATAAAATCAATTTTGAGGTAATAAAACCA
1 -TCTGTTTTAACCAAAAATA-TAAAA-AAATT-AACTTAAAATCAATTATGAGATTATAAAACCA
* ********** * *
18879 CTTAAAGTGAGTAATAAGGCTTTTGAAGGNNNNNNNNNNTATAAATAGACTTTTCTTGTCAATGA
62 TTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGA
** * *
18944 ATGTTTTTTTCTTCATGTTTCTCGAGGTAAACATTCAATTATA
127 ATGCCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATA
* * * * *
18987 GTCTTTTTTGACCAAAAATATATAAAAAAATTGAA-TATAAAATCAATTCTGAGATAATAAAACT
1 -TCTGTTTTAACC-AAAA-ATATAAAAAAATT-AACT-TAAAATCAATTATGAGATTATAAAACC
* ********** *
19051 AGTTAAAGTGAGTAATAAGGCTTTTGAAGGNNNNNNNNNNTATAAATGGACTTTTCTTACCAATG
61 ATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATG
* *
19116 AATGCCTTTTTGTTCATGTTTCTCAAGGTCGACATTCAATTATA
126 AATGCCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATA
* * * * * **
19160 GTCTATTTTAACCTAAAATGTAAAAAAATTCAACTTAAAATTAACTATGAGATTATAAAATTATT
1 -TCTGTTTTAACCAAAAATATAAAAAAATT-AACTTAAAATCAATTATGAGATTATAAAACCATT
********** * * *
19225 TAAAGTGAGTAATAAGGCTTTTGAAGGNNNNNNNNNNTATAAATGGACTTTTCTTTCAAATAAAT
64 TAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAAT
** * ** ** *
19290 GGGTTTTTCTACACATTTCTTGAGGCA-AGCATTCAATTATA
129 GCCTTTTTCTTCATGTTTCTCAAGGTAGA-CATTCAATTATA
* ** * * *
19331 GTCTATTTTAATGAAAAATGT-CAAAAATTAAACTTAAAATCAATTATAAGATTATAAAACCATT
1 -TCTGTTTTAACCAAAAATATAAAAAAATT-AACTTAAAATCAATTATGAGATTATAAAACCATT
* ********** * * *
19395 TAAAGTAAGTANNNNNNNNNNTAAAGGAATGAGTGACTATAAATGGACTTTTCTTGTCAATGAAT
64 TAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAAT
* * * * *
19460 GCATTTTTCTTC-TCGTTTCAT-AAGTTATACATTTAACTATAA
129 GCCTTTTTCTTCAT-GTTTC-TCAAGGTAGACATTCAATTAT-A
* * * *
19502 TCTGTTTTAA-CAAAAATATGAAAAAAGTTGAACTTAAAATAAATTTTGAGATTATCAAACCATT
1 TCTGTTTTAACCAAAAATAT-AAAAAAATT-AACTTAAAATCAATTATGAGATTATAAAACCATT
* * *
19566 TGAAGTAAGTAATAAGTCTTTTGA
64 TAAAGTGAGTAATAAGGCTTTTGA
19590 NNNNNNNNNN
Statistics
Matches: 1885, Mismatches: 544, Indels: 116
0.74 0.21 0.05
Matches are distributed among these distances:
169 16 0.01
170 387 0.21
171 806 0.43
172 193 0.10
173 465 0.25
174 15 0.01
175 3 0.00
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.35
Consensus pattern (169 bp):
TCTGTTTTAACCAAAAATATAAAAAAATTAACTTAAAATCAATTATGAGATTATAAAACCATTTA
AAGTGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGC
CTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATA
Found at i:17608 original size:343 final size:341
Alignment explanation
Indices: 16934--17681 Score: 789
Period size: 343 Copynumber: 2.2 Consensus size: 341
16924 AGCCATAGTC
* * *
16934 TGTTTTAATGAAAAATGTAAAACAT-TCAACTTAAAATCAATTATGAGATTATAATACCATTTAC
1 TGTTTTAATCAAAAATGTAAAAC-TCTCAACTTAAAATCAATTATGAGATTATAAAATCATTTAC
* * *
16998 AGCGAGTAATAAGGCTTTTAGAGGAATGGGTGACTATAAATGGACTTTTCTTGCAAAATGAATGC
65 AGCAAGTAATAAGGCTTTTAGAGAAATGGGAGACTATAAATGGACTTTTCTTGCAAAATGAATGC
* ** * * * *
17063 CTTTTTCTTCATGTTTCTCGAGGTATACTTTCAAGTATCATCTATTTTAACCAAAAATATAAAAA
130 CTTTTTCTTCAAGTTTCTCGAAATAGACATTCAAGTATAATATATTTTAACCAAAAATATAAAAA
* *
17128 ATTTCAACTAAAATCAATTATTAGATTATAAAACCATTTAAAGTGAGTAATAACGCTTCTGAAAT
195 AATTCAACTAAAATCAATTATTAGATTATAAAACCATTTAAAGTGAGTAATAACGCTTCTGAAAG
* * * * *
17193 AATAGGTGACCCTAAATGAAATTTTCTTACCAATGAATGCTTTTTTCTTCACCTTTCTTATGGTC
260 AATAGGTGACCATAAATGAAATTTTCTTACCAATGAATACCTTTTTCTTCACCTTTCTCAAGGTC
*
17258 AACATTCAATTATGATT
325 AACATTCAATTATAATT
*
17275 TGTTTTAATCAAAAATGTAAAAGCTCTCAACTTAAAATCAATTATGAGATTATAAAATCTTTTGA
1 TGTTTTAATCAAAAATGTAAAA-CTCTCAACTTAAAATCAATTATGAGATTATAAAATCATTT-A
* * *
17340 -AGCAAGTAATAAGGCTTTTCA-AGAAATGGGAGATTATAAATGGACTTTTCTTGC-CAGTGAAT
64 CAGCAAGTAATAAGGCTTTT-AGAGAAATGGGAGACTATAAATGGACTTTTCTTGCAAAATGAAT
*** * * * *
17402 TTTTTTTTCTTCAAGTTTTTC-AAATAGACATTCAATTATAATATGTTTTAACCAAAAATGTAAA
128 GCCTTTTTCTTCAAGTTTCTCGAAATAGACATTCAAGTATAATATATTTTAACCAAAAATAT-AA
* * **********
17466 AACAAATTGAACATAAAATCAATT-TTGGTATTATAAAACCATTTAAAGTGAGTANNNNNNNNNN
192 AA-AAATTCAAC-TAAAATCAATTATTAG-ATTATAAAACCATTTAAAGTGAGTAATAACGCTTC
* * * * * * *
17530 TGAAGGAAT-GAGTGACTATAAATGGACTTTTCTTTCCAATGAATACCTTTTTCTTTACGTTTAC
254 TGAAAGAATAG-GTGACCATAAATGAAATTTTCTTACCAATGAATACCTTTTTCTTCACCTTT-C
17594 -CAAGGT-AGACATTCAATTATAATT
317 TCAAGGTCA-ACATTCAATTATAATT
* * * * *
17618 TGTTCTAA-CTAAAAATATAAAAAC-CTTCAGCCTAAAATCAATTATGAGATTATAAAATAATTT
1 TGTTTTAATC-AAAAATGT-AAAACTC-TCAACTTAAAATCAATTATGAGATTATAAAATCATTT
17681 A
63 A
17682 NNNNNNNNNN
Statistics
Matches: 336, Mismatches: 57, Indels: 27
0.80 0.14 0.06
Matches are distributed among these distances:
340 31 0.09
341 48 0.14
342 98 0.29
343 154 0.46
344 5 0.01
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.36
Consensus pattern (341 bp):
TGTTTTAATCAAAAATGTAAAACTCTCAACTTAAAATCAATTATGAGATTATAAAATCATTTACA
GCAAGTAATAAGGCTTTTAGAGAAATGGGAGACTATAAATGGACTTTTCTTGCAAAATGAATGCC
TTTTTCTTCAAGTTTCTCGAAATAGACATTCAAGTATAATATATTTTAACCAAAAATATAAAAAA
ATTCAACTAAAATCAATTATTAGATTATAAAACCATTTAAAGTGAGTAATAACGCTTCTGAAAGA
ATAGGTGACCATAAATGAAATTTTCTTACCAATGAATACCTTTTTCTTCACCTTTCTCAAGGTCA
ACATTCAATTATAATT
Found at i:18375 original size:170 final size:171
Alignment explanation
Indices: 18020--18388 Score: 390
Period size: 170 Copynumber: 2.2 Consensus size: 171
18010 NNNNNNNNNN
* * *
18020 ATTTAAAGCGAGTAATAAGACTTTTGAAGGAATGGGAGACAATAAATAGAATTTTCTTCTCAATG
1 ATTTAAAGCGAGTAATAAGACTTTTGAAGGAATGGGACACAATAAATAGAATTTTCTGCTCAAGG
* * * * * *
18085 AATAGCTTTTTCTACATGTTTCATAAGGTAGACATTCAATTATAGTATGTTTTAATAGAAAATGT
66 AATAGCTTTCTCTACACGTTTCATAAGGTAGACATTCAATTATAATATATTTTAATAAAAAATAT
* * ********** *
18150 AAAAAAATTTAACTTAAAATGAATTNNNNNNNNNNAAAATT
131 AAAAAAAATTAACTAAAAATGAATTATGAGTTTATAAAACT
* *
18191 ATTTAAAGCGAGTAATAAGGA-TTTTTAAGGAATGGGACACAAT-AATAGACTTTTACTGC-CAA
1 ATTTAAAGCGAGTAATAA-GACTTTTGAAGGAATGGGACACAATAAATAGAATTTT-CTGCTCAA
** * *
18253 GGAAT-GCCTTTCTCTTTACGTTTC-TCAAGGTCGACATTCAATTATAATCTATTTTAATAAAAA
64 GGAATAG-CTTTCTCTACACGTTTCAT-AAGGTAGACATTCAATTATAATATATTTTAATAAAAA
*
18316 ATATAAAAAAAATTAACTAAAAATTAATTATGAGTTTATAAAACT
127 ATATAAAAAAAATTAACTAAAAATGAATTATGAGTTTATAAAACT
18361 ATTTAAAGCGAGTAATAA-AGCTTTTGAA
1 ATTTAAAGCGAGTAATAAGA-CTTTTGAA
18389 AGCTTGAGTG
Statistics
Matches: 162, Mismatches: 30, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
168 1 0.01
169 2 0.01
170 116 0.72
171 41 0.25
172 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.13, T:0.34
Consensus pattern (171 bp):
ATTTAAAGCGAGTAATAAGACTTTTGAAGGAATGGGACACAATAAATAGAATTTTCTGCTCAAGG
AATAGCTTTCTCTACACGTTTCATAAGGTAGACATTCAATTATAATATATTTTAATAAAAAATAT
AAAAAAAATTAACTAAAAATGAATTATGAGTTTATAAAACT
Found at i:18737 original size:173 final size:170
Alignment explanation
Indices: 18528--19251 Score: 584
Period size: 173 Copynumber: 4.2 Consensus size: 170
18518 NNNNNNNNNN
* * **
18528 AACCATTTAAAGTGAGTAATAGGGCTTTTGAAGGAATGAAAAACTGCAAATAGACTTTTCTTGAC
1 AACCACTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAAAAACTATAAATAGACTTTTCTTGAC
* * *
18593 AATGAATGTCTTTTTCTTCATGTTTTTCAAGATAGACAATCAATTATAATCTATTTTATGCAAAA
66 AATGAATGTCTTTTTCTTCATGTTTTTCAAGGTAGACATTCAATTATAGTCT-TTTTATGCAAAA
18658 ATGTAGAAAAACATTATACATAAAATCAATTTTGAGATAATAA
130 AT-TAGAAAAACATTA-ACATAAAATCAATTTTGAGATAATAA
* * * ***** * *
18701 AACCACTTAAAGTGAGTACTAAGGATTTTAAAGGAATGGGTGGCTATAAATAGA-TTTTTTTTAC
1 AACCACTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAAAAACTATAAATAGACTTTTCTTGAC
* * * **
18765 AAATGAATG-CTTTGTT-TT-TTGTATTTCTCATGGTAGATATTCAATTATAGTCTGTTTTAACC
66 -AATGAATGTCTTT-TTCTTCATGT-TTT-TCAAGGTAGACATTCAATTATAGTCT-TTTTATGC
*
18827 AAAAA-TAGAAAAACAAATTAAACATAAAATCAATTTTGAGGTAATAA
126 AAAAATTAGAAAAAC--ATT-AACATAAAATCAATTTTGAGATAATAA
********** *
18874 AACCACTTAAAGTGAGTAATAAGGCTTTTGAAGGNNNNNNNNNNTATAAATAGACTTTTCTTGTC
1 AACCACTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAAAAACTATAAATAGACTTTTCTTGAC
* * * *
18939 AATGAATGTTTTTTTCTTCATGTTTCTCGAGGTAAACATTCAATTATAGTCTTTTT-TGACCAAA
66 AATGAATGTCTTTTTCTTCATGTTTTTCAAGGTAGACATTCAATTATAGTCTTTTTATG--CAAA
* * * *
19003 AATATATAAAAAAATTGAATATAAAATCAATTCTGAGATAATAA
129 AAT-TAGAAAAACATT-AACATAAAATCAATTTTGAGATAATAA
* * ********** *
19047 AACTAGTTAAAGTGAGTAATAAGGCTTTTGAAGGNNNNNNNNNNTATAAATGGACTTTTCTT-AC
1 AACCACTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAAAAACTATAAATAGACTTTTCTTGA-
* * * * ** *
19111 CAATGAATGCCTTTTTGTTCATGTTTCTCAAGGTCGACATTCAATTATAGTCTATTTTAACCTAA
65 CAATGAATGTCTTTTTCTTCATGTTTTTCAAGGTAGACATTCAATTATAGTCT-TTTTATGCAAA
* * * * *
19176 AATGTA-AAAAA-ATTCAACTTAAAATTAACTATGAGATTATAA
129 AAT-TAGAAAAACATT-AACATAAAATCAATTTTGAGATAATAA
** *
19218 AATTATTTAAAGTGAGTAATAAGGCTTTTGAAGG
1 AACCACTTAAAGTGAGTAATAAGGCTTTTGAAGG
19252 NNNNNNNNNN
Statistics
Matches: 455, Mismatches: 78, Indels: 38
0.80 0.14 0.07
Matches are distributed among these distances:
171 68 0.15
172 26 0.06
173 332 0.73
174 19 0.04
175 10 0.02
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.35
Consensus pattern (170 bp):
AACCACTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAAAAACTATAAATAGACTTTTCTTGAC
AATGAATGTCTTTTTCTTCATGTTTTTCAAGGTAGACATTCAATTATAGTCTTTTTATGCAAAAA
TTAGAAAAACATTAACATAAAATCAATTTTGAGATAATAA
Found at i:20228 original size:172 final size:161
Alignment explanation
Indices: 20022--20353 Score: 371
Period size: 172 Copynumber: 2.0 Consensus size: 161
20012 ATTTAAAGCC
* * * * **
20022 AGTAATAAGGCTTTTGAAAGAATGGAAGACTATAAATAGACTTTTCTTGCCAATGAATGTTTTTT
1 AGTAATAAAGCTTTTGAAAGAAT-GAAGACTATAAATAGACTTTTCTTACAAACGAATGCCTTTT
* * *
20087 TCTTCACGTTTCTTAAGGTAGAAATTCAATTATAGTCTGTTTTAACCAAA-AATGTTATAAAAAT
65 TCTTCACATTTCTTAAGGTAGAAATTCAATTATAGTCTGTTTTAA-CAAATAATGTAAAAAAAAT
*
20151 AGAACCTAAAATCAATTTTGAGATAATAAAANNNNNNNNNNTG
129 AGAACCTAAAATCAATTATGAGATAATAAAA----------TG
*
20194 AGTAATAAAGCTTTTGAAGGAAT-AAGTGACTATAAATAGACTTTTCTTACAAACGAATGCCTTT
1 AGTAATAAAGCTTTTGAAAGAATGAA--GACTATAAATAGACTTTTCTTACAAACGAATGCCTTT
* * * *
20258 TTCTTCATATTTCTTGAGGTAGATATTCAATTATAGTCTGTTTTAATAAATAATGTAAAAAAAAT
64 TTCTTCACATTTCTTAAGGTAGAAATTCAATTATAGTCTGTTTTAACAAATAATGTAAAAAAAAT
* *
20323 TGAACCTAAAATCAATTATGAGATTATAAAA
129 AGAACCTAAAATCAATTATGAGATAATAAAA
20354 CCATTTGAAG
Statistics
Matches: 140, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
170 2 0.01
171 3 0.02
172 135 0.96
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.35
Consensus pattern (161 bp):
AGTAATAAAGCTTTTGAAAGAATGAAGACTATAAATAGACTTTTCTTACAAACGAATGCCTTTTT
CTTCACATTTCTTAAGGTAGAAATTCAATTATAGTCTGTTTTAACAAATAATGTAAAAAAAATAG
AACCTAAAATCAATTATGAGATAATAAAATG
Found at i:22423 original size:513 final size:508
Alignment explanation
Indices: 21462--23043 Score: 1499
Period size: 513 Copynumber: 3.1 Consensus size: 508
21452 TTATAGTCTG
* * *
21462 TTTTAACAAAAAATGT-AAAAAATTTAACTTAAAATCAATTAT-ACGATTATAAAACCATTTAAA
1 TTTTAACAACAAATATAAAAAAATTTAACTTAAAATCAATTATGA-GAATATAAAACCATTTAAA
* * ********** *
21525 GCGAGTAATAAGGTTTTTGAAGNNNNNNNNNNCTATAAATGGACTTTTCTT-TCAAATAAATGTG
65 GCGAGTAATAAAGCTTTTGAAGGAATAAAAGACTATAAATGGACTTTTCTTCTCAAATAAAT-AG
* * * * *
21589 TTTTTCTACACGTTTCTCAATGTAGACATTCAATTATAATCTGTTTTAACCAATAAA-GAAAACA
129 TTTTTCTACACGTTTCTCAAGGTAAACATTCAATTATAGTCTGTTTTAA-GAA-AAATGTAAA-A
* * * * ** *
21653 AATAGAACTTAATATAAATTTTGAGATTATAAAACTATTTAAAGTTAGTAATAAGGCTTCTG-AA
191 AATTGAAATTAAAATAAATTATGAGATTATAAAA-TATTTAAAGCGAGTAATAAGGCTTTTGAAA
* * ** * * * *
21717 GAAATGCGTAACTATAGCTAGACTTTTCTTGCCAATGAATGTCTTTTTTTTCACGTTTCTTAAGG
255 G-AATGGGTGACTATAAATGGACTTTTCTTACCAATGAATGCCTTTTTCTTCACGTTTCTTAAGG
* * * *
21782 TAAACATTCAATTATAATCTATTTTAA-ATAAAATGT-AAAAACATTGAACTTAAAATTAATTAT
319 TAGACATTCAATTATAATCTGTTTTAATA-AAAATGTAAAAAAAATTGAACTT-AAATCAATTAT
********** ** *
21845 GAGATTNNNNNNNNNNTTAAACCGAGTAATAAGGCTTTTAAAGGAATGGGTGACTATAGATGGAC
382 GAGATTATAAAACAATTTAAAGTGAGTAATAAGGCTTTTAAAGGAAT-GGTGACTATAAATGGAC
* * * * **
21910 TTTCCTTGTAAATCAATGCTTTTTTCTTCATATTTCTCAAGGTAGACATTCAATTATACTCTA
446 TTTTCTTGCAAATAAATGCATTTTTCTTCATATTTCTCAAGGTAGACATTCAATTATACAATA
* * *
21973 TTTTAACCAA-AAATGTAAAAATAA-TT-ACATATTAAATGAATTATGAGAATATAAAACCATTT
1 TTTTAA-CAACAAATATAAAAA-AATTTAAC-T-TAAAATCAATTATGAGAATATAAAACCATTT
* * * ********** *
22035 CAAGTGAGTAATAAGGCTTTTGAAGNNNNNNNNNNCTATAAATGGACTTTTCTTCTC-AATGAAT
62 AAAGCGAGTAATAAAGCTTTTGAAGGAATAAAAGACTATAAATGGACTTTTCTTCTCAAATAAAT
* * *
22099 AGCTTTTT-TGCACGTTTCACAAGGTAAACATTCAATTATAGCCTGTTTTAATGAAAAATGTAAA
127 AG-TTTTTCTACACGTTTCTCAAGGTAAACATTCAATTATAGTCTGTTTTAA-GAAAAATGTAAA
* * *
22163 AAATTCAAGTTAAAATGAATTATGAGATTATAAAAGTATTTAAAGCGAGTAATAAGGCTTTTGAA
190 AAATTGAAATTAAAATAAATTATGAGATTATAAAA-TATTTAAAGCGAGTAATAAGGCTTTTGAA
*
22228 AGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAAAGCCTTTTTCTTCACGTTTCTTAAGG
254 AGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAATGCCTTTTTCTTCACGTTTCTTAAGG
* * * *
22293 TAGACATTTAATTATAATCTGTCTTAATGAAAAATCTAAAAAAAATTGAACTTAAAGTCAATTTT
319 TAGACATTCAATTATAATCTGTTTTAAT-AAAAATGTAAAAAAAATTGAACTTAAA-TCAATTAT
* * * *
22358 GAGATTATAGAACCATTTGAAGTGAGTAATATGGCTTTTAAAGGAATAGGTGACTATAAATGGAC
382 GAGATTATAAAACAATTTAAAGTGAGTAATAAGGCTTTTAAAGGAAT-GGTGACTATAAATGGAC
* * * * ** * *
22423 TTTTTTTGCCAATGAATGCATTTCTCTTCATGCTTCTCAAGGTAGACACTCAATTATACAATG
446 TTTTCTTGCAAATAAATGCATTTTTCTTCATATTTCTCAAGGTAGACATTCAATTATACAATA
* *
22486 TTTTAACAACAAATATAAAAAAATTTAACTTAAAATCAGTTATGAGATTATAAAACCATTTAAAG
1 TTTTAACAACAAATATAAAAAAATTTAACTTAAAATCAATTATGAGAATATAAAACCATTTAAAG
* * *
22551 CGAGTAATAAAGTTTTTGAAGGAATAAAAGACTATAAATAGACTTTTCTTC-CAAATTAATGAGT
66 CGAGTAATAAAGCTTTTGAAGGAATAAAAGACTATAAATGGACTTTTCTTCTCAAATAAAT-AGT
** * * * * *
22615 TTTTCTACACGTTTCTTGAGGCAAGCATTCAATTATAGTCTCTTTTAAGAAAAAATATAAAAAAA
130 TTTTCTACACGTTTCTCAAGGTAAACATTCAATTATAGTCTGTTTTAAG-AAAAATGTAAAAAAT
* * * *
22680 TGAAATGAAACTCAATTATGAGATTATAAAATCATTTAAAGCGAGTAATAAGGCTTTTGAATGAA
194 TGAAATTAAAATAAATTATGAGATTATAAAAT-ATTTAAAGCGAGTAATAAGGCTTTTGAAAGAA
* * * * *
22745 TGGGTGACTATAAATGGACTTTTCTCACCAATGAATGCATTTTTCTTCAAGTTTCTCAAGGCAGA
258 TGGGTGACTATAAATGGACTTTTCTTACCAATGAATGCCTTTTTCTTCACGTTTCTTAAGGTAGA
* ** * *
22810 TATTCAATTATTGTCTGTTTTAACTAAAAATGTAAAAAAAATTAAACTTCAAATCGATTATGAGA
323 CATTCAATTATAATCTGTTTTAA-TAAAAATGTAAAAAAAATTGAACTT-AAATCAATTATGAGA
* * *
22875 TTATAAAATAATTTAAAGTGAGTAATAAGGCTTTTTGAAGGAATGAGAGACTATAAAT-GACTTT
386 TTATAAAACAATTTAAAGTGAGTAATAAGGC-TTTTAAAGGAATG-GTGACTATAAATGGACTTT
* ** * * * * ** *
22939 TCTTCCAAATAAATG-AGTTTTTCAACACATTTCTCTAGGGAGGCATTCAATTATA-TTTG
449 TCTTGCAAATAAATGCA-TTTTTCTTCATATTTCTCAAGGTAGACATTCAATTATACAATA
** * *
22998 TTTTAATGA-AAAT-TGTAAAAAATTCAACTTAAAATCAATTATGAGA
1 TTTTAACAACAAATAT-AAAAAAATTTAACTTAAAATCAATTATGAGA
23044 TTATNNNNNN
Statistics
Matches: 890, Mismatches: 153, Indels: 56
0.81 0.14 0.05
Matches are distributed among these distances:
510 1 0.00
511 180 0.20
512 161 0.18
513 517 0.58
514 31 0.03
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.35
Consensus pattern (508 bp):
TTTTAACAACAAATATAAAAAAATTTAACTTAAAATCAATTATGAGAATATAAAACCATTTAAAG
CGAGTAATAAAGCTTTTGAAGGAATAAAAGACTATAAATGGACTTTTCTTCTCAAATAAATAGTT
TTTCTACACGTTTCTCAAGGTAAACATTCAATTATAGTCTGTTTTAAGAAAAATGTAAAAAATTG
AAATTAAAATAAATTATGAGATTATAAAATATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGG
GTGACTATAAATGGACTTTTCTTACCAATGAATGCCTTTTTCTTCACGTTTCTTAAGGTAGACAT
TCAATTATAATCTGTTTTAATAAAAATGTAAAAAAAATTGAACTTAAATCAATTATGAGATTATA
AAACAATTTAAAGTGAGTAATAAGGCTTTTAAAGGAATGGTGACTATAAATGGACTTTTCTTGCA
AATAAATGCATTTTTCTTCATATTTCTCAAGGTAGACATTCAATTATACAATA
Found at i:23019 original size:341 final size:339
Alignment explanation
Indices: 21450--23047 Score: 1422
Period size: 341 Copynumber: 4.7 Consensus size: 339
21440 NNNNNNNNNN
*
21450 AATTATAGTCTGTTTTAACAAAAAATGT-AAAAAATTTAACTTAAAATCAATTAT-ACGATTATA
1 AATTATAGTCTGTTTTAACTAAAAATGTAAAAAAATTTAACTTAAAATCAATTATGA-GATTATA
********** *
21513 AAACCATTTAAAGCGAGTAATAAGG-TTTTTGAAGNNNNNNNNNNCTATAAATGGACTTTTCTTT
65 AAACCATTTAAAGCGAGTAATAAGGCTTTTTGAAGGAATGAGAGACTATAAATGGACTTTTCTTC
* * * *
21577 CAAATAAATGTGTTTTTCTACACGTTTCTCAATGTAGACATTCAATTATAATCTGTTTTAACCAA
130 CAAATAAATGAGTTTTTCTACACGTTTCTCTAGGTAGACATTCAATTAT-ATCTGTTTTAACGAA
* * * *
21642 TAAA-G-AAAACAAATAGAACTTAATATAAATTTTGAGATTATAAAACTATTTAAAGTTAGTAAT
194 -AAATGTAAAA-AAAT-GAACTTAA-ATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
* * * ** * * *
21705 AAGGCTTCTGAAGAAATGCGTAACTATAGCTAGACTTTTCTTGCCAATGAATGTCTTTTTTTTCA
255 AAGGCTTTTGAAGAAATGGGTGACTATAAATGGACTTTTCTCGCCAATGAATG-CTTTTTCTTCA
*
21770 CGTTTCTTAAGGTAAACATTC
319 CGTTTCTCAAGGTAAACATTC
* * * * * * ****
21791 AATTATAATCTATTTTAAAT-AAAATGTAAAAACATTGAACTTAAAATTAATTATGAGATTNNNN
1 AATTATAGTCTGTTTTAACTAAAAATGTAAAAAAATTTAACTTAAAATCAATTATGAGATTATAA
****** * * * * * * **
21855 NNNNNNTTAAACCGAGTAATAAGGC-TTTTAAAGGAATGGGTGACTATAGATGGACTTTCCTTGT
66 AACCATTTAAAGCGAGTAATAAGGCTTTTTGAAGGAATGAGAGACTATAAATGGACTTTTCTTCC
* ** * ** * * *
21919 AAATCAATGCTTTTTTCTTCATATTTCTCAAGGTAGACATTCAATTATACTCTATTTTAACCAAA
131 AAATAAATGAGTTTTTCTACACGTTTCTCTAGGTAGACATTCAATTATA-TCTGTTTTAACGAAA
* * * * *
21984 AATGTAAAAATAATTACATATTAAATGAATTATGAGAATATAAAACCATTTCAAGTGAGTAATAA
195 AATGTAAAAA-AATGA-A-CTTAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAA
********** * *
22049 GGCTTTTGAAGNNNNNNNNNNCTATAAATGGACTTTTCTTC-TCAATGAATAGCTTTTT-TGCAC
257 GGCTTTTGAAGAAATGGGTGACTATAAATGGACTTTTC-TCGCCAATGAAT-GCTTTTTCTTCAC
*
22112 GTTTCACAAGGTAAACATTC
320 GTTTCTCAAGGTAAACATTC
* * * *
22132 AATTATAGCCTGTTTTAA-TGAAAAATGT-AAAAAATTCAAGTTAAAATGAATTATGAGATTATA
1 AATTATAGTCTGTTTTAACT-AAAAATGTAAAAAAATTTAACTTAAAATCAATTATGAGATTATA
** * * *
22195 AAAGTATTTAAAGCGAGTAATAAGGC-TTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTA
65 AAACCATTTAAAGCGAGTAATAAGGCTTTTTGAAGGAATGAGAGACTATAAATGGACTTTTCTT-
** * * * *
22259 CC-AATGAAA-GCCTTTTTCTTCACGTTTCT-TAAGGTAGACATTTAATTATAATCTGTCTTAAT
129 CCAAAT-AAATGAGTTTTTCTACACGTTTCTCT-AGGTAGACATTCAATTAT-ATCTGTTTTAAC
* * * *
22321 GAAAAATCTAAAAAAAATTGAACTTAAAGTCAATTTTGAGATTATAGAACCATTTGAAGTGAGTA
191 GAAAAATGT-AAAAAAA-TGAACTTAAA-TCAATTATGAGATTATAAAACCATTTAAAGTGAGTA
* * * * * * *
22386 ATATGGCTTTTAAAGGAATAGGTGACTATAAATGGACTTTTTTTGCCAATGAATGCATTTCTCTT
253 ATAAGGCTTTTGAAGAAATGGGTGACTATAAATGGACTTTTCTCGCCAATGAATGC-TTTTTCTT
* * * *
22451 CATGCTTCTCAAGGTAGACACTC
317 CACGTTTCTCAAGGTAAACATTC
*** * *
22474 AATTATACAATGTTTTAAC-AACAAATATAAAAAAATTTAACTTAAAATCAGTTATGAGATTATA
1 AATTATAGTCTGTTTTAACTAA-AAATGTAAAAAAATTTAACTTAAAATCAATTATGAGATTATA
* * * *
22538 AAACCATTTAAAGCGAGTAATAAAG-TTTTTGAAGGAATAAAAGACTATAAATAGACTTTTCTTC
65 AAACCATTTAAAGCGAGTAATAAGGCTTTTTGAAGGAATGAGAGACTATAAATGGACTTTTCTTC
* * *
22602 CAAATTAATGAGTTTTTCTACACGTTTCT-TGAGGCA-AGCATTCAATTATAGTCTCTTTTAA-G
130 CAAATAAATGAGTTTTTCTACACGTTTCTCT-AGGTAGA-CATTCAATTATA-TCTGTTTTAACG
* * * * *
22664 AAAAAATATAAAAAAATGAAATGAAACTCAATTATGAGATTATAAAATCATTTAAAGCGAGTAAT
192 -AAAAATGTAAAAAAATGAACTTAAA-TCAATTATGAGATTATAAAACCATTTAAAGTGAGTAAT
*
22729 AAGGCTTTTGAATG-AATGGGTGACTATAAATGGACTTTTCTCACCAATGAATGCATTTTTCTTC
255 AAGGCTTTTGAA-GAAATGGGTGACTATAAATGGACTTTTCTCGCCAATGAATGC-TTTTTCTTC
* * * *
22793 AAGTTTCTCAAGGCAGATATTC
318 ACGTTTCTCAAGGTAAACATTC
* * * *
22815 AATTATTGTCTGTTTTAACTAAAAATGTAAAAAAAATTAAACTTCAAATCGATTATGAGATTATA
1 AATTATAGTCTGTTTTAACTAAAAATGT-AAAAAAATTTAACTTAAAATCAATTATGAGATTATA
** *
22880 AAATAATTTAAAGTGAGTAATAAGGCTTTTTGAAGGAATGAGAGACTATAAAT-GACTTTTCTTC
65 AAACCATTTAAAGCGAGTAATAAGGCTTTTTGAAGGAATGAGAGACTATAAATGGACTTTTCTTC
* * * * * *
22944 CAAATAAATGAGTTTTTCAACACATTTCTCTAGGGAGGCATTCAATTATATTTGTTTTAATGAAA
130 CAAATAAATGAGTTTTTCTACACGTTTCTCTAGGTAGACATTCAATTATATCTGTTTTAACGAAA
* * *
23009 ATTGTAAAAAATTCAACTTAAAATCAATTATGAGATTAT
195 AATGTAAAAAAATGAACTT-AAATCAATTATGAGATTAT
23048 NNNNNNNNNN
Statistics
Matches: 1010, Mismatches: 207, Indels: 80
0.78 0.16 0.06
Matches are distributed among these distances:
340 20 0.02
341 559 0.55
342 265 0.26
343 166 0.16
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.35
Consensus pattern (339 bp):
AATTATAGTCTGTTTTAACTAAAAATGTAAAAAAATTTAACTTAAAATCAATTATGAGATTATAA
AACCATTTAAAGCGAGTAATAAGGCTTTTTGAAGGAATGAGAGACTATAAATGGACTTTTCTTCC
AAATAAATGAGTTTTTCTACACGTTTCTCTAGGTAGACATTCAATTATATCTGTTTTAACGAAAA
ATGTAAAAAAATGAACTTAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCT
TTTGAAGAAATGGGTGACTATAAATGGACTTTTCTCGCCAATGAATGCTTTTTCTTCACGTTTCT
CAAGGTAAACATTC
Found at i:23452 original size:171 final size:170
Alignment explanation
Indices: 23150--23635 Score: 475
Period size: 171 Copynumber: 2.8 Consensus size: 170
23140 NNNNNNNNGT
* * * *
23150 GACTATAAATAGACTTTTCTTGGCAATGAATACCTTTTTCTTCATGTTTCTTGAGGTAGACATTC
1 GACTATAAATAGAC-TTTCTTGTCAATGAAT-GCTTTTTCTTCATGTTTCTCGAAGTAGACATTC
* * * * * * *
23215 AAGTATAATTTGTTTTAA-CCAACAT-TGTAACAAAAGTTGAA-ATTAAAATCAAATATGAGATT
64 AATTATACTCTGTTTTAATCAAAAATATATAA-AAAAATTGAACA-TAAAATC-AATATGAGATT
* *
23277 ATAAAACCCTTTAAAGCTA-GTAACGAGGCTTTTGAAGAAATTGAA
126 ATAAAACCATTTAAAGC-ACGTAACGAGGCTTTTGAAGAAATGGAA
* * * *
23322 GACTATAAATGGACTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCTCGATGTAAACATTCA
1 GACTATAAATAGACTTTCTTGTCAATGAATGC-TTTTTCTTCATGTTTCTCGAAGTAGACATTCA
*
23387 ATTATACTCTGTTTTAATCAAAAATATATAAAAAAATTGAACAT-AAATCAATGATGAGGTTATA
65 ATTATACTCTGTTTTAATCAAAAATATATAAAAAAATTGAACATAAAATCAAT-ATGAGATTATA
* * **
23451 AAACCATTTAAAGCACGTAATGAGGCTTTTGAAGGAATGGGT
129 AAACCATTTAAAGCACGTAACGAGGCTTTTGAAGAAATGGAA
* * * * * * * *
23493 GACCATAAATTGACTTCTCTTCTTAATAAATGACTTTTTCTACATGTTTCACGAAATAGACATTC
1 GACTATAAATAGACTT-TCTTGTCAATGAATG-CTTTTTCTTCATGTTTCTCGAAGTAGACATTC
* * * * *
23558 AATTATAAC-CTATTTTAAT-AAAAA-ATATACAAATAATTTAACTTAAAATGAATTATGAGATT
64 AATTAT-ACTCTGTTTTAATCAAAAATATATA-AAAAAATTGAACATAAAATCAA-TATGAGATT
*
23620 GTAAAACCATTTAAAG
126 ATAAAACCATTTAAAG
23636 TGAATAATAA
Statistics
Matches: 263, Mismatches: 39, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
170 10 0.04
171 136 0.52
172 108 0.41
173 9 0.03
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (170 bp):
GACTATAAATAGACTTTCTTGTCAATGAATGCTTTTTCTTCATGTTTCTCGAAGTAGACATTCAA
TTATACTCTGTTTTAATCAAAAATATATAAAAAAATTGAACATAAAATCAATATGAGATTATAAA
ACCATTTAAAGCACGTAACGAGGCTTTTGAAGAAATGGAA
Found at i:23627 original size:172 final size:171
Alignment explanation
Indices: 23246--23661 Score: 455
Period size: 172 Copynumber: 2.4 Consensus size: 171
23236 ACATTGTAAC
* * * * *
23246 AAAAGTTGAAATTAAAATCAAATATGAGATTATAAAACCCTTTAAAGCTAGTAACGAGGCTTTTG
1 AAAAATTGAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGC-AGTAATGAGGCTTTTG
* * * * * * * *
23311 AAGAAATTGAAGACTATAAATGGACTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCTCGAT
65 AAGGAATGGAAGACCATAAATGGACTTTCTTCTCAATAAATGCTTTTTTCTACACGTTTCACGAA
* *
23376 GTAAACATTCAATTATACTCTGTTTTAATCAAAAATATATAA
130 ATAAACATTCAATTATACTCTATTTTAATCAAAAATATATAA
* * *
23418 AAAAATTGAACAT-AAATCAATGATGAGGTTATAAAACCATTTAAAGCACGTAATGAGGCTTTTG
1 AAAAATTGAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCA-GTAATGAGGCTTTTG
** * * *
23482 AAGGAATGGGTGACCATAAATTGACTTCTCTTCTTAATAAATGAC-TTTTTCTACATGTTTCACG
65 AAGGAATGGAAGACCATAAATGGACTT-TCTTCTCAATAAATG-CTTTTTTCTACACGTTTCACG
*
23546 AAATAGACATTCAATTATAAC-CTATTTTAAT-AAAAA-ATATACA
128 AAATAAACATTCAATTAT-ACTCTATTTTAATCAAAAATATATA-A
* * * * * * *
23589 AATAATTTAACTTAAAATGAATTATGAGATTGTAAAACCATTTAAAGTGAATAATAAGGCTTTTG
1 AAAAATTGAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAG-CAGTAATGAGGCTTTTG
23654 AAGGAATG
65 AAGGAATG
23662 AGAGANNNNN
Statistics
Matches: 203, Mismatches: 34, Indels: 14
0.81 0.14 0.06
Matches are distributed among these distances:
170 6 0.03
171 81 0.40
172 112 0.55
173 4 0.02
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.34
Consensus pattern (171 bp):
AAAAATTGAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAGTAATGAGGCTTTTGA
AGGAATGGAAGACCATAAATGGACTTTCTTCTCAATAAATGCTTTTTTCTACACGTTTCACGAAA
TAAACATTCAATTATACTCTATTTTAATCAAAAATATATAA
Found at i:24635 original size:170 final size:170
Alignment explanation
Indices: 24128--24844 Score: 740
Period size: 171 Copynumber: 4.2 Consensus size: 170
24118 NNNNNNNNNN
* * **
24128 AATAAGACTTTTGAAGGAAT-GTGTGACTATATATGGACTTTTCTTATCAATGAATGCCTTTTTT
1 AATAAGACTTTTGAAGAAATAG-GTGACTATAAATGGACTTTTCTTGCCAATGAATG-CTTTTTT
* * * * * *
24192 CTTCACATTTCTCG-AGGTATACTTTCAAGTATAATCTGTTTTAATTAAAAATATAAAAAAATTT
64 CTTCACATTTCT-GAAGGTAAACATTCAATTATAATATGTTTTAACTAAAAATGTAAAAAAA-TT
* * *
24256 AACTTAAAATCAATTATT-TGATTATAAAACCATATAAAGCGAGT
127 AACTTAAAATCAATT-TTGAGATTATAAAACTATTTAAAGCGAGT
* * * * * * * *
24300 AATAACACTTATGAAAAAATGGGTGACTATAAATGAAATTTTCTTACCAATGAATGCCTTTTTCT
1 AATAAGACTTTTGAAGAAATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTTTCT
* * * * **
24365 TCACCTTTCTGAAGGTAGACATTCAATTATGATATGTTTTAACCAAAAATGT-AAAAGCTCTCAA
66 TCACATTTCTGAAGGTAAACATTCAATTATAATATGTTTTAACTAAAAATGTAAAAAAAT-T-AA
* * *
24429 CTTAAAATTAATTATGAGATTATAAAACTTTTTAAAGCGAGT
129 CTTAAAATCAATTTTGAGATTATAAAACTATTTAAAGCGAGT
* * ** *
24471 AGTAAGGCTTTTGAAGTTATAGGAGACTATAAATGGACTTTTCTTGCC-ATGAATGCTTTTTTCT
1 AATAAGACTTTTGAAGAAATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTTTCT
* * * *
24535 TCACATTTTTTAA-ATAAACATTCAATTATAATATGTTTTAACTAAAAATGCAGAAAAAATTGAA
66 TCACATTTCTGAAGGTAAACATTCAATTATAATATGTTTTAACTAAAAATGTA-AAAAAATT-AA
* *
24599 CATAAAATCAATTTTG-GTATTATAAAA-TAATTTAAAGTGAGT
129 CTTAAAATCAATTTTGAG-ATTATAAAACT-ATTTAAAGCGAGT
* * *
24641 AATAAGACTTTTGAAGAAATAAGTGACTATAAATAGACTTTTCTTGCCAATGAA-GGTCTTTTT-
1 AATAAGACTTTTGAAGAAATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCT-TTTTTC
* *
24704 TTCA-AGTTTCTCAAGGTAAACATTCAATTATAATATGTTTTAACTAAAAA-GTAAAAAAAATAA
65 TTCACA-TTTCTGAAGGTAAACATTCAATTATAATATGTTTTAACTAAAAATGTAAAAAAATTAA
* * * *
24767 GTTAAAATTAATTTTGAGACTATAAAACTATTTAAAGTGAGT
129 CTTAAAATCAATTTTGAGATTATAAAACTATTTAAAGCGAGT
* * *
24809 AATAAGGCTTTTGAAGGAATGAGAT-ACTATAAATGG
1 AATAAGACTTTTGAAGAAAT-AGGTGACTATAAATGG
24845 NNNNNNNNNN
Statistics
Matches: 452, Mismatches: 77, Indels: 36
0.80 0.14 0.06
Matches are distributed among these distances:
168 64 0.14
169 48 0.11
170 123 0.27
171 170 0.38
172 46 0.10
173 1 0.00
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.37
Consensus pattern (170 bp):
AATAAGACTTTTGAAGAAATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCTTTTTTCT
TCACATTTCTGAAGGTAAACATTCAATTATAATATGTTTTAACTAAAAATGTAAAAAAATTAACT
TAAAATCAATTTTGAGATTATAAAACTATTTAAAGCGAGT
Found at i:24643 original size:341 final size:340
Alignment explanation
Indices: 24152--24824 Score: 843
Period size: 341 Copynumber: 2.0 Consensus size: 340
24142 AGGAATGTGT
* * ** * *
24152 GACTATATATGGACTTTTCTTATCAATGAATGCCTTTTTTCTTCACATTTCTCGAGGTATACTTT
1 GACTATAAATGGACTTTTCTTAGCAATGAATGCCTTTTTTCTTCACATTTCTCGAAATAAACATT
* * * * * *
24217 CAAGTATAATCTGTTTTAATTAAAAATATAAAAAAATTTAACTTAAAATCAATTATTTGATTATA
66 CAAGTATAATATGTTTTAACTAAAAATACAAAAAAATTGAACATAAAATCAATTATTGGATTATA
* **
24282 AAACCATATAAAGCGAGTAATAACACTTATGAAAAAATGGGTGACTATAAAT-GAAATTTTCTTA
131 AAACAATATAAAGCGAGTAATAACACTTATGAAAAAATAAGTGACTATAAATAG-AATTTTCTTA
* * * * *
24346 CCAATGAATGCCTTTTTCTTCACCTTTCTGAAGGTAGACATTCAATTATGATATGTTTTAACCAA
195 CCAATGAAGGCCTTTTT-TTCAACTTTCTCAAGGTAAACATTCAATTATAATATGTTTTAACCAA
**** * * *
24411 AAATGTAAAAGCTCTCAACTTAAAATTAATTATGAGATTATAAAACTTTTTAAAGCGAGTAGTAA
259 AAA-GTAAAAAAAAT-AACTTAAAATTAATTATGAGACTATAAAACTATTTAAAGCGAGTAATAA
24476 GGCTTTTGAAGTTATAGGA
322 GGCTTTTGAAGTTATAGGA
* **
24495 GACTATAAATGGACTTTTCTT-GCCATGAATG-CTTTTTTCTTCACATTT-TTTAAATAAACATT
1 GACTATAAATGGACTTTTCTTAGCAATGAATGCCTTTTTTCTTCACATTTCTCGAAATAAACATT
* *
24557 CAATTATAATATGTTTTAACTAAAAATGCAGAAAAAATTGAACATAAAATCAATT-TTGGTATTA
66 CAAGTATAATATGTTTTAACTAAAAATACA-AAAAAATTGAACATAAAATCAATTATTGG-ATTA
* * * * * * *
24621 TAAAATAATTTAAAGTGAGTAATAAGACTTTTGAAGAAATAAGTGACTATAAATAGACTTTTCTT
129 TAAAACAATATAAAGCGAGTAATAACACTTATGAAAAAATAAGTGACTATAAATAGAATTTTCTT
* * * *
24686 GCCAATGAAGGTCTTTTTTTCAAGTTTCTCAAGGTAAACATTCAATTATAATATGTTTTAACTAA
194 ACCAATGAAGGCCTTTTTTTCAACTTTCTCAAGGTAAACATTCAATTATAATATGTTTTAACCAA
* * *
24751 AAAGTAAAAAAAATAAGTTAAAATTAATTTTGAGACTATAAAACTATTTAAAGTGAGTAATAAGG
259 AAAGTAAAAAAAATAACTTAAAATTAATTATGAGACTATAAAACTATTTAAAGCGAGTAATAAGG
24816 CTTTTGAAG
324 CTTTTGAAG
24825 GAATGAGATA
Statistics
Matches: 281, Mismatches: 46, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
338 54 0.19
339 7 0.02
340 80 0.28
341 111 0.40
342 9 0.03
343 20 0.07
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (340 bp):
GACTATAAATGGACTTTTCTTAGCAATGAATGCCTTTTTTCTTCACATTTCTCGAAATAAACATT
CAAGTATAATATGTTTTAACTAAAAATACAAAAAAATTGAACATAAAATCAATTATTGGATTATA
AAACAATATAAAGCGAGTAATAACACTTATGAAAAAATAAGTGACTATAAATAGAATTTTCTTAC
CAATGAAGGCCTTTTTTTCAACTTTCTCAAGGTAAACATTCAATTATAATATGTTTTAACCAAAA
AGTAAAAAAAATAACTTAAAATTAATTATGAGACTATAAAACTATTTAAAGCGAGTAATAAGGCT
TTTGAAGTTATAGGA
Found at i:26751 original size:171 final size:167
Alignment explanation
Indices: 25816--26753 Score: 435
Period size: 171 Copynumber: 5.5 Consensus size: 167
25806 TTTGAAGTAA
* * * *
25816 ACATTCAATTATACTCTATTTTAATCAAAAATGTAAAACAAATTGAACATAAAATCAATTATGAG
1 ACATTCAATTATA-TTTGTTTTAACCAAAAATGTAAAA-AAATTGAACTTAAAATCAATTATGAG
* ********
25881 ATTA-AAAATCATTTAAAGCAAGTAATAAGGCTTTNNNNNNNNNNGG-AGACTATAAATGGACTT
64 ATTATAAAACCATTTAAAGCAAGTAATAAGGCTTT--TGAAGGAAGGAAGACTATAAATGGACTT
* * * * * *
25944 TTCTTGCCAATGAATGCATTTTTCCTCACATTTCAT-GAGTTAG
127 TTCTT-CCAATTAATGC-TGTTTCTTTATAGTTC-TCGAGTTAG
** * * * * *
25987 ACATTTGATTATAATCTATTTTAACC-AAAATATAAAAACAATTGGACTTAAAATAAACTT-TGA
1 ACATTCAATTAT-ATTTGTTTTAACCAAAAATGTAAAAA-AATTGAACTTAAAATCAA-TTATGA
* * * * * **********
26050 GATTATAAAACCATTTAAACCGAGTAATAAGGTTTTTGAAGGAATGAGTGACTNNNNNNNNNNTT
63 GATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGAAGGA-AGACTATAAATGGACTT
* * * * * * *
26115 TTCTTGCTAATGAATGCTTTTTTCTTCA-CGTTTCTTGAGATAG
127 TTCTT-CCAATTAATGC-TGTTTCTTTATAG-TTCTCGAGTTAG
* * * * * * ** *******
26158 ATATTCAATTATAGTCTGCTTTT-ACAAAAAAGGTAAAACAA-TCATTTTAAAATCAANNNNNNN
1 ACATTCAATTATA-TTTG-TTTTAACCAAAAATGTAAAAAAATTGAACTTAAAATCAATTATGAG
*** * *
26221 NNNATAAAACTATTTAAAGCAAGTAATAAGGCTTTTGAAGGAATAGG-AGAGTATAAATGGACTT
64 ATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGG-A-AGGAAGACTATAAATGGACTT
* ** * * *
26285 TTCTTCCAAATAATGAAGTTT-TTCTACACGTTTCTC-ATTATAA
127 TTCTTCCAATTAATGCTGTTTCTT-TATA-G-TTCTCGAGT-TAG
* * * *
26328 ACATTCAATTATAATGTGTTTTAACCATAAAA-GGAAAAAAATTGAACTTAATATCAATTTTGAG
1 ACATTCAATTAT-ATTTGTTTTAACCA-AAAATGTAAAAAAATTGAACTTAAAATCAATTATGAG
* ** * * * ******
26392 ATTATTAAACCATTTAAAGTGAGTAATAAGACTTTTGAAGGAATGAGTGACTATAAATNNNNNNN
64 ATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGAAGGA-AGACTATAAAT-GGACTT
*** * * * * * * * *
26457 NNNTACCAATGAATACCTTTTTCTTCATATTTCTTGAGGTAG
127 TTCTTCCAATTAAT-GCTGTTTCTTTATAGTTCTCGAGTTAG
*****
26499 ACATTCAATTATAATTT-TTTTAACCAAAAATGTAACAAAAATTGAACTTAAAATCAATTNNNNN
1 ACATTCAATTAT-ATTTGTTTTAACCAAAAATGTAA-AAAAATTGAACTTAAAATCAATTATGAG
***** * *
26563 NNNNNAAAACCATTTAAAGCAAGTAATGAGGCTTTTGAAGGAGCGGAAGACTATAAATGGACTTT
64 ATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGA-AGGAAGACTATAAATGGACTTT
26628 TCTTGCCAATTAATGCTGTTTCTTTATAGTTCTCGAGTTAG
128 TCTT-CCAATTAATGCTGTTTCTTTATAGTTCTCGAGTTAG
* * *
26669 ACATTCAATTATATTCTGTTTTAATCAAAAATCTAAAAACAATTGAACATAAAATCAATTATGAG
1 ACATTCAATTATATT-TGTTTTAACCAAAAATGTAAAAA-AATTGAACTTAAAATCAATTATGAG
*
26734 ATTATAAAACTATTTAAAGC
64 ATTATAAAACCATTTAAAGC
26754 GANNNNNNNN
Statistics
Matches: 542, Mismatches: 190, Indels: 70
0.68 0.24 0.09
Matches are distributed among these distances:
167 2 0.00
168 4 0.01
169 23 0.04
170 172 0.32
171 307 0.57
172 27 0.05
173 5 0.01
174 2 0.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.33
Consensus pattern (167 bp):
ACATTCAATTATATTTGTTTTAACCAAAAATGTAAAAAAATTGAACTTAAAATCAATTATGAGAT
TATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGAAGGAAGACTATAAATGGACTTTTCT
TCCAATTAATGCTGTTTCTTTATAGTTCTCGAGTTAG
Found at i:27269 original size:172 final size:160
Alignment explanation
Indices: 27019--27446 Score: 351
Period size: 172 Copynumber: 2.5 Consensus size: 160
27009 AAAAATATTT
* * *
27019 AACTTAAAATGAATTATGAGATTGTAAAACCATTTAAAGCGAGTAATAAAGCTTTTGAAAGAATG
1 AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCTTCTGAAAGAATG
* *
27084 AAAGACTATAAATGGACCTTTCGTGCTAATGAATGTC-TTTTTCTTCACGTTTCTTGATGTAAGC
66 AAAGACTATAAATGGACCTTTCGTGCTAATAAATG-CATTTTT-TTCACGTTTCTTGA-GGAAGC
27148 ATTCAATTATAATCTGTTTTAACCAAAAAAGNNNNNNNNNNTG
128 ATTCAATTATAATCTGTTTTAACCAAAAAAG----------TG
* ** * * *
27191 AACTTAAAATCAATTTTGAGATTATAAAATTATTTAAAGTGAGTGATAAGGCTTCT-AAAGGAAT
1 AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCTTCTGAAA-GAAT
* * * * *
27255 GGATA-ACTATAAATGGACTTTTCTTGCTAATAAATGCATTTTTTTCACGTTTCTTTAGGAGGCA
65 -GAAAGACTATAAATGGACCTTTCGTGCTAATAAATGCATTTTTTTCACGTTTCTTGAGGAAGCA
* * *
27319 TTCAATTATAGTCTGTTTTAACCTAAAATGTAAAAAACTTC
129 TTCAATTATAATCTGTTTTAACC--------AAAAAA-GTG
* * * ** *
27360 AACTTAAAATCAATTGTGGGATTATAAAATCATTTAAAGCGAGTAATATGGCTTTTG-AAGAAAT
1 AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCTTCTGAAAG-AAT
* * *
27424 GAGATACTATAAATGGACTTTTC
65 GAAAGACTATAAATGGACCTTTC
27447 TTCCAAATAA
Statistics
Matches: 214, Mismatches: 27, Indels: 33
0.78 0.10 0.12
Matches are distributed among these distances:
168 4 0.02
169 73 0.34
170 27 0.13
171 17 0.08
172 84 0.39
173 3 0.01
178 6 0.03
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.35
Consensus pattern (160 bp):
AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCTTCTGAAAGAATG
AAAGACTATAAATGGACCTTTCGTGCTAATAAATGCATTTTTTTCACGTTTCTTGAGGAAGCATT
CAATTATAATCTGTTTTAACCAAAAAAGTG
Found at i:27397 original size:169 final size:167
Alignment explanation
Indices: 26976--27695 Score: 575
Period size: 169 Copynumber: 4.2 Consensus size: 167
26966 ACAAGGTAGA
* ** * * *
26976 CATTCAATTATAGTCTATTTTAATAAAAAATATAAAAATATTTAACTTAAAATGAATTATGAGAT
1 CATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAA-ATTCAACTTAAAATCAATTATGAGAT
* * * * *
27041 TGTAAAACCATTTAAAGCGAGTAATAAAGCTTTTGAAA-GAAT-GAAAGACTATAAATGGACCTT
65 TATAAAATCATTTAAAGCGAGTAATAAGGCTTTT-AAAGGAATGGATA-ACTATAAATGGACTTT
* * * *
27104 TCGTGCTAATGAATGTCTTTTTCTTCACGTTTCTTGATGTAAG
128 TCTTGCTAATAAATG-CTTTTT-TTCACGTTTCTT-AAGGAAG
* * ******** * *
27147 CATTCAATTATAATCTGTTTTAACCAAAAAAGNNNNNNNNNNTGAACTTAAAATCAATTTTGAGA
1 CATTCAATTATAGTCTGTTTTAACCAAAAATG--TAAAAAATTCAACTTAAAATCAATTATGAGA
* * * *
27212 TTATAAAATTATTTAAAGTGAGTGATAAGGCTTCTAAAGGAATGGATAACTATAAATGGACTTTT
64 TTATAAAATCATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATGGATAACTATAAATGGACTTTT
* *
27277 CTTGCTAATAAATGCATTTTTTTCACGTTTCTTTAGGAGG
129 CTTGCTAATAAATGC-TTTTTTTCACGTTTCTTAAGGAAG
* * *
27317 CATTCAATTATAGTCTGTTTTAACCTAAAATGTAAAAAACTTCAACTTAAAATCAATTGTGGGAT
1 CATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAA-TTCAACTTAAAATCAATTATGAGAT
* * *
27382 TATAAAATCATTTAAAGCGAGTAATATGGCTTTTGAAGAAATGAGAT-ACTATAAATGGACTTTT
65 TATAAAATCATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATG-GATAACTATAAATGGACTTTT
* * * * ** * *
27446 CTTCCAAATAAATGGGTTTTCTAAACATTTCCTAAGGCAAG
129 CTTGCTAATAAAT-GCTTTTTTTCACGTTTCTTAAGG-AAG
* * * * ** *
27487 CTTTCAACTATATTCTGTTTTGATGAAAAATGTAAAAAATTCAACTCAAAATCAATTATGAGATT
1 CATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAATTCAACTTAAAATCAATTATGAGATT
********** * * *
27552 ATAAANNNNNNNNNNGCGAGTAATAAGGCTTTTGAAGGAATTGG-TGACTATAAAAGGACTTTTC
66 ATAAAATCATTTAAAGCGAGTAATAAGGCTTTTAAAGGAA-TGGATAACTATAAATGGACTTTTC
* * * * * *
27616 TTCCCAATGAATGCCTTTTTGTTCACATTTCTCAAGGAATA
130 TTGCTAATAAATG-CTTTTT-TTCACGTTTCTTAAGGAA-G
* * *
27657 CAATCAATTATAATCTGTTTTAACTAAAAATGTAAAAAA
1 CATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAA
27696 ATTAAAATTN
Statistics
Matches: 433, Mismatches: 102, Indels: 29
0.77 0.18 0.05
Matches are distributed among these distances:
168 2 0.00
169 185 0.43
170 116 0.27
171 42 0.10
172 85 0.20
173 3 0.01
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.35
Consensus pattern (167 bp):
CATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAATTCAACTTAAAATCAATTATGAGATT
ATAAAATCATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATGGATAACTATAAATGGACTTTTCT
TGCTAATAAATGCTTTTTTTCACGTTTCTTAAGGAAG
Found at i:29448 original size:172 final size:169
Alignment explanation
Indices: 29268--29927 Score: 514
Period size: 172 Copynumber: 3.8 Consensus size: 169
29258 GAAAGACCAC
* * *
29268 AAATAGACTTTTCTTGACAATGAATGCCTTTTCTTCATGTTTCTCAAAGCAAACAATCAATTATA
1 AAATAGACTTTTCTTGACAATGAATGCCTTTTCTTCATGTTTCT-AAAGTAGACATTCAATTATA
** ** *
29333 ACCTGTTTTATGCAAAAATGTAGAAAAAAATTGAACATAAAATCAATTTTGAAATAATAAAACCA
65 ATATGTTTTAACCAAAAAT-TA-AAAAAAATTGAACATAAAATCAATTTTGAGATAATAAAACCA
** * *
29398 TTTAAAGTGAGTACTAAAAATTTTGAAAAAATGGGTGGCTAT
128 TTTAAAGTGAGTACTAAAAATTTTGAAAAAATACGAGACTAT
* * * * * * **
29440 AAATAGACTATTGTTGCCAATGAATACCTTGTTATTCATATTTCTTATGGTAGACATTCAATTAT
1 AAATAGACTTTTCTTGACAATGAATGCCTT-TTCTTCATGTTTC-TAAAGTAGACATTCAATTAT
*
29505 AATATGTTTTAACCAAAAATTAAAAAACAAATTGAACATAAAATCAATTTTGAGGTAATAAAACC
64 AATATGTTTTAACCAAAAATT-AAAAA-AAATTGAACATAAAATCAATTTTGAGATAATAAAACC
********** *** **
29570 ATTTAANNNNNNNNNNAAGGCTTTTGAAGGAATACGAGACTAT
127 ATTTAAAGTGAGTACTAAAAATTTTGAAAAAATACGAGACTAT
* * *
29613 AAATAGACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCTAAAGGTAGACATTCAATTAT
1 AAATAGACTTTTCTTGACAATGAATGC-CTTTTCTTCATGTTTCTAAA-GTAGACATTCAATTAT
* * * *
29678 AGTATTTTTTAACCAAAAATATAAAAAAAATTTAACATAAAATCAATTTTGAGATAATAAAATCA
64 AATATGTTTTAACCAAAAAT-TAAAAAAAATTGAACATAAAATCAATTTTGAGATAATAAAACCA
* * *** ** * ***
29743 GTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGA-GTGACNNN
128 TTTAAAGTGAGTACTAAAAATTTTGAAAAAAT-ACGAGACTAT
******* * * * * * *
29785 NNNNNNNCTTTTCTTGCCAATGAATGCATTTTTTTTCACGTTTCTCAATA-TAGACATCCGATTA
1 AAATAGACTTTTCTTGACAATGAATGC-CTTTTCTTCATGTTTCT-AA-AGTAGACATTCAATTA
* * * * * *
29849 TAATATGTTTTAACTAAAAAATTAAAACAATTTGAACTTAAAATCACTTTTGAGATTATAAAACC
63 TAATATGTTTTAAC-CAAAAATTAAAAAAAATTGAACATAAAATCAATTTTGAGATAATAAAACC
29914 ATTTAAAGTGAGTA
127 ATTTAAAGTGAGTA
29928 ATAA
Statistics
Matches: 388, Mismatches: 89, Indels: 22
0.78 0.18 0.04
Matches are distributed among these distances:
172 201 0.52
173 182 0.47
174 5 0.01
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.34
Consensus pattern (169 bp):
AAATAGACTTTTCTTGACAATGAATGCCTTTTCTTCATGTTTCTAAAGTAGACATTCAATTATAA
TATGTTTTAACCAAAAATTAAAAAAAATTGAACATAAAATCAATTTTGAGATAATAAAACCATTT
AAAGTGAGTACTAAAAATTTTGAAAAAATACGAGACTAT
Done.