Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398931.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2215.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 958

Length: 1598
ACGTcount: A:0.15, C:0.05, G:0.06, T:0.16

Warning! 928 characters in sequence are not A, C, G, or T


Found at i:1535 original size:21 final size:20

Alignment explanation


    Indices: 1497--1535  Score: 51
    Period size: 21  Copynumber: 1.9  Consensus size: 20

       1487 AATGTATGGA

                         *      
       1497 AAAAGGCATTCATTGTCAAG
          1 AAAAGGCATTCATAGTCAAG

                       *       
       1517 AAAAGTGCATTTATAGTCA
          1 AAAAG-GCATTCATAGTCA

       1536 CCCGTTCCAT


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  20    5  0.31
  21   11  0.69

ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28


Consensus pattern (20 bp):   
AAAAGGCATTCATAGTCAAG
Done.