Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398939.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2221.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 964

Length: 1608
ACGTcount: A:0.25, C:0.11, G:0.09, T:0.25

Warning! 486 characters in sequence are not A, C, G, or T


Found at i:1054 original size:171 final size:171

Alignment explanation


    Indices: 877--1269  Score: 491
    Period size: 171  Copynumber: 2.3  Consensus size: 171

        867 TCATTCCTTT

                       *    *                                            *   
        877 AAAAGCCTTATCACTCACTTTAAATGGTTTTATAATCTCA-AATTTGATTTTAAGTTGAATTTTT
          1 AAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAA-TTGATTTTAAGTTGAATGTTT

               *    *             *                  *          *            
        941 CTATAGTTTTGGTTAAAATAGGTTATAATTGAATGTCGACCTTAGGAAACATTGAGAAAAAGCCA
         65 CTACAGTTCTGGTTAAAATAGGCTATAATTGAATGTCGACCATAGGAAACATGGAGAAAAAGCCA

                                                      
       1006 TTCATTGAGAAGAAAAATCCATTTATAGTCACCAATTCTTCC
        130 TTCATTGAGAAGAAAAATCCATTTATAGTCACCAATTCTTCC

                                    *             *      *                   
       1048 AAAAGCCTTATTACTCGCTTTAAACGGTTTTATAATCTTATAATTAATTTTAAGTTGAATGTTTC
          1 AAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATGTTTC

                               *       **********     *            *      *  
       1113 TACAGTTCTGGTTAAAATATGCTATAANNNNNNNNNNACCATGGGAAACATGGAGGAAAAGCTAT
         66 TACAGTTCTGGTTAAAATAGGCTATAATTGAATGTCGACCATAGGAAACATGGAGAAAAAGCCAT

                           *                *      * 
       1178 TCATTGAGAAGAAAAGTCCATTTATAGTCACCCATTCTTTC
        131 TCATTGAGAAGAAAAATCCATTTATAGTCACCAATTCTTCC

            *                   *    *                         
       1219 GAAAGCCTTATTACTCGCTTAAAATAGTTTTATAATCTCATAATTGATTTT
          1 AAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTT

       1270 NNNNNNNNNN


Statistics
Matches: 187,  Mismatches: 34, Indels: 2
        0.84            0.15        0.01

Matches are distributed among these distances:
 171  185  0.99
 172    2  0.01

ACGTcount: A:0.34, C:0.14, G:0.13, T:0.36


Consensus pattern (171 bp):   
AAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATGTTTC
TACAGTTCTGGTTAAAATAGGCTATAATTGAATGTCGACCATAGGAAACATGGAGAAAAAGCCAT
TCATTGAGAAGAAAAATCCATTTATAGTCACCAATTCTTCC
Done.