Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398940.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2222.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9165
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.28

Warning! 1028 characters in sequence are not A, C, G, or T


Found at i:5888 original size:20 final size:21

Alignment explanation


    Indices: 5846--5886  Score: 61
    Period size: 18  Copynumber: 2.1  Consensus size: 21

       5836 AACAAGTTTA

                                 
       5846 TTAATTTTCAAAATAAATATT
          1 TTAATTTTCAAAATAAATATT

                                 
       5867 TTAATTTT--AAA-AAATATT
          1 TTAATTTTCAAAATAAATATT

              
       5885 TT
          1 TT

       5887 TTTCTAGACA


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  18    9  0.45
  19    3  0.15
  21    8  0.40

ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51


Consensus pattern (21 bp):   
TTAATTTTCAAAATAAATATT

Found at i:9029 original size:13 final size:13

Alignment explanation


    Indices: 9011--9036  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       9001 CTAACTAAAT

                         
       9011 CAAAAAACCGAAC
          1 CAAAAAACCGAAC

                         
       9024 CAAAAAACCGAAC
          1 CAAAAAACCGAAC

       9037 TCACTTCGAT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.62, C:0.31, G:0.08, T:0.00


Consensus pattern (13 bp):   
CAAAAAACCGAAC
Done.