Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398943.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2225.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 694

Length: 1158
ACGTcount: A:0.31, C:0.13, G:0.12, T:0.31

Warning! 152 characters in sequence are not A, C, G, or T


Found at i:483 original size:171 final size:163

Alignment explanation


    Indices: 198--655  Score: 425
    Period size: 171  Copynumber: 2.7  Consensus size: 163

        188 NNNNNNNAAT

                      *                               *        *      *     *
        198 GGTTTTATAACGCCATAATTGATTTTAAGTTGAATTTTTTTATATTTTTGGCTAAAACTGACTAC
          1 GGTTTTATAATGCCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGACTAT

                  *      *  *        *  *      *  *                     *    
        263 AATTGAATGTCTACCTCAAGAAACGTAATG-AAAACGATATTCATTGGCAAGAAAAGTCCTTTTA
         66 AATTGATTGTCTATCTTAAGAAACGCAAAGAAAAAAG-CATTCATTGGCAAGAAAAGTCCATTTA

                                **                     
        327 TAGTCACCCATTNNNNNNNNNNCCTC-ATTACTCGCTTTAAAC
        130 TAGTCACCCATT--------AGCCTCGA-TACTCGCTTTAAAC

                                              *          *          *        
        369 GGTTTTATAATGCCATAATTGATTTTAAGTTGAAGTTTTTTACATATTTGGTTAAAGCAGACTAT
          1 GGTTTTATAATGCCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGACTAT

             *   *                                                           
        434 ACTTGCTTGTCTATCTTAAGAAACGCAAAGAAAAAAGCATTCATTGGCAAGAAAAGTCCATTTAT
         66 AATTGATTGTCTATCTTAAGAAACGCAAAGAAAAAAGCATTCATTGGCAAGAAAAGTCCATTTAT

                             **   *        *        *
        499 AGTCACCCANNNNNNNNNNAGCTTCGATACTTGCTTTAAAT
        131 AGTCACCCA--------TTAGCCTCGATACTCGCTTTAAAC

                                      *     *                        **   ** 
        540 GGTTTTATAATGCCATAATTGATTTTCAGTTGCATTTTTTTACATTTTTGGTTAAAATGGACCGT
          1 GGTTTTATAATGCCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGACTAT

                 *           *                 *         *     
        605 AATTGTTTGTCTATCTTGAGAAACGCAAAGAAAAAGGCATTCATTTGCAAG
         66 AATTGATTGTCTATCTTAAGAAACGCAAAGAAAAAAGCATTCATTGGCAAG

        656 NNNNNNNNNN


Statistics
Matches: 238,  Mismatches: 39, Indels: 20
        0.80            0.13        0.07

Matches are distributed among these distances:
 171  232  0.97
 172    6  0.03

ACGTcount: A:0.31, C:0.14, G:0.15, T:0.35


Consensus pattern (163 bp):   
GGTTTTATAATGCCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACAGACTAT
AATTGATTGTCTATCTTAAGAAACGCAAAGAAAAAAGCATTCATTGGCAAGAAAAGTCCATTTAT
AGTCACCCATTAGCCTCGATACTCGCTTTAAAC
Done.