Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398944.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2226.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4043

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
297--612
164
1.9
164
83
5
406
37
11
13
37
1.80
803--2235
172
8.5
171
74
6
997
35
10
12
37
1.78
1453--2018
163
3.4
161
77
8
518
36
9
14
37
1.79
1699--2235
171
3.1
172
80
3
602
35
10
13
39
1.79
2199--2266
31
2.2
31
94
0
118
14
14
10
60
1.59
2038--2439
202
2.0
202
84
2
522
33
11
11
40
1.79
2244--2771
171
3.1
167
79
7
517
35
12
12
37
1.82
1764--2771
544
1.9
533
79
7
1122
35
11
13
37
1.80
2317--2832
171
3.0
167
78
5
516
36
12
12
37
1.82
2683--2969
136
2.1
134
80
7
321
35
12
15
36
1.85
2341--3273
479
1.9
478
81
4
1092
35
13
14
35
1.86
2823--4043
171
7.1
170
75
4
888
35
12
14
34
1.83
2837--4043
341
3.5
337
76
6
916
35
12
14
34
1.83

Tables:   1

The End!