Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018398949.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2231.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19458
ACGTcount: A:0.27, C:0.10, G:0.09, T:0.28
Warning! 5089 characters in sequence are not A, C, G, or T
Found at i:461 original size:171 final size:171
Alignment explanation
Indices: 148--576 Score: 398
Period size: 170 Copynumber: 2.5 Consensus size: 171
138 TTTGAGATTC
* *
148 TAAAACCATTTAAAGTGAGTAATAAGGCTTTTAAAAGAACGAGTTACTATAAATGGACTTTTCTT
1 TAAAACCATTTAAAGTGAGAAATAAGGCTTTTAAAAGAACGAGTGACTATAAATGGACTTTTCTT
** * * * * *
213 GCCAATGAATACCTTTTTCTTCATGTGTTCTAGAGCAGACATTTAATTATAATGTGTTCTAATCA
66 GCCAATGAATACCTTTTTCTTCACATGTTCAAGAGAAAACATTCAATAATAATGTGTTCTAATCA
278 AAAATATAAAAAAATTTAATTTTAGATCAATTATTAGTTTA
131 AAAATATAAAAAAATTTAATTTTAGATCAATTATTAGTTTA
* * * * *
319 TAAAACCATTTAAAGTGAGAAATAAGGCTTTTGAAAGAATGGGTGACTGTAAATGGGCTTTTCTT
1 TAAAACCATTTAAAGTGAGAAATAAGGCTTTTAAAAGAACGAGTGACTATAAATGGACTTTTCTT
* * * *
384 GTCAATGAATA-CTTTTTCTTCACAT-TTCCCAAG-GAAAACATTCACTAATAATTTTTTCTAA-
66 GCCAATGAATACCTTTTTCTTCACATGTT--CAAGAGAAAACATTCAATAATAATGTGTTCTAAT
* * * ** * * * *
445 CAAAAAATGTTAAAAAATTAAACCTAAAATCAATTATGAGATTA
129 C-AAAAATATAAAAAAATTTAATTTTAGATCAATTATTAGTTTA
********** * * * * *
489 TANNNNNNNNNNAAGCGAGTAATAAGGCTTTTAAAAGAACGGGTGACTTTAAATGCACTTTTCTT
1 TAAAACCATTTAAAGTGAGAAATAAGGCTTTTAAAAGAACGAGTGACTATAAATGGACTTTTCTT
* **
554 GTCAATGAATGGCTTTTTCTTCA
66 GCCAATGAATACCTTTTTCTTCA
577 TATTTCTTGA
Statistics
Matches: 209, Mismatches: 45, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
169 3 0.01
170 124 0.59
171 82 0.39
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.35
Consensus pattern (171 bp):
TAAAACCATTTAAAGTGAGAAATAAGGCTTTTAAAAGAACGAGTGACTATAAATGGACTTTTCTT
GCCAATGAATACCTTTTTCTTCACATGTTCAAGAGAAAACATTCAATAATAATGTGTTCTAATCA
AAAATATAAAAAAATTTAATTTTAGATCAATTATTAGTTTA
Found at i:3959 original size:172 final size:170
Alignment explanation
Indices: 2937--4246 Score: 673
Period size: 171 Copynumber: 7.7 Consensus size: 170
2927 NNNNNNNTGT
* * * **
2937 CAATGAATGCCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATAATGTGTTCTATTAAAA
1 CAATGAATGCCTTTTTCTTCATGTTTTTCAAGGTAGACATTCAATTATAATCTGTTTTAACAAAA
** *
3002 AATGTAAACA-AATTCAGCCTAAAATCAATTATGAGATTAT-AAACCATTTAAAGCAACTAATAA
66 AATGTAAA-AGAATTCAAACTAAAATCAATTATGAGATTATAAAACCATTTAAAGGAA-TAATAA
**********
3065 GGCTTTTNNNNNNNNNNGTGACTATAAATGGACTTTTCTTG-
129 GGCTTTTAAAGGAATAGGTGACTATAAATGGACTTTTCTTGC
* * * * *
3106 CAAGTGAATGCATTTTTCTTCATGTTTCTT-GAGGTAGACAGTCAATTATAATATGTTTTAACCA
1 CAA-TGAATGCCTTTTTCTTCATGTTT-TTCAAGGTAGACATTCAATTATAATCTGTTTTAACAA
* * * * * * *********
3170 AAGATATACGAAGAATTCAAACTAAAATTAATTTTGAGATTATAAAACTATTTNNNNNNNNNNAT
64 AAAATGTA-AAAGAATTCAAACTAAAATCAATTATGAGATTATAAAACCATTT-AAAGGAATAAT
* * *
3235 AAGGCTTTTAAAGAAATAGGTGACTATAAATGAACTTTTCTTAC
127 AAGGCTTTTAAAGGAATAGGTGACTATAAATGGACTTTTCTTGC
* * * ********** *
3279 CAACGAATGCTTTTTTCTTCATGTTTCTT-GAGGTANNNNNNNNNNTATAATCTGTTTTAACCAA
1 CAATGAATGCCTTTTTCTTCATGTTT-TTCAAGGTAGACATTCAATTATAATCTGTTTTAACAAA
* ** * * ** *
3343 AAATATAGAAAGAACACAAACTAAAATCAATTTTGAGATTAGAAAAATATTTAAAGTGAGTAATA
65 AAATGTA-AAAGAATTCAAACTAAAATCAATTATGAGATTATAAAACCATTTAAAG-GAATAATA
* * * **
3408 AGGCTTTTAAAAGAATAGGTGAATATAAATAGACTTTTCTTAT
128 AGGCTTTTAAAGGAATAGGTGACTATAAATGGACTTTTCTTGC
* * ********** * * *
3451 CAATGAATACCTTTTTCTTCATATTNNNNNNNNNNGACATTCAATTATATTCTGTTCTAACTAAA
1 CAATGAATGCCTTTTTCTTCATGTTTTTCAAGGTAGACATTCAATTATAATCTGTTTTAACAAAA
* ********** *
3516 AATGTAAAA-ATATTCAATCTAAAATCAATTATGAGANNNNNNNNNNATTTAAAGCAAGTAATAA
66 AATGTAAAAGA-ATTCAAACTAAAATCAATTATGAGATTATAAAACCATTTAAAGGAA-TAATAA
* * * * *
3580 GCCTTTTAAAGGAATGGGTGATTATAAATGGACTTTTATTGT
129 GGCTTTTAAAGGAATAGGTGACTATAAATGGACTTTTCTTGC
* ** *
3622 CAATGATTGCCTTTTTCTTCACATTTTTCAAGGTAGACATTCAATTATCATCTGTTTTAACAAAA
1 CAATGAATGCCTTTTTCTTCATGTTTTTCAAGGTAGACATTCAATTATAATCTGTTTTAACAAAA
* ********** * * *
3687 AATATTAAAA-AATNNNNNNNNNNATTAATTATGAGATTATAAAACC-TTCTAAAAAGAGTAATA
66 AAT-GTAAAAGAATTCAAACTAAAATCAATTATGAGATTATAAAACCATT-T-AAAGGAATAATA
* * *
3750 AGGCTTTTGAAGGAAT-GCCTGACTATAAATAGACTTTTCTTGC
128 AGGCTTTTAAAGGAATAG-GTGACTATAAATGGACTTTTCTTGC
* * *
3793 CAATGAATGCATTTTTTTTCTTGTTTTTCAAGGTAGACATTCAATTATAATCTGTTTTAACAAAA
1 CAATGAATGCCTTTTTCTTCATGTTTTTCAAGGTAGACATTCAATTATAATCTGTTTTAACAAAA
* * * * * *
3858 AACGTACAAAGAATTCAAATTAAAATTAATTTTGAGATTATATAACCATTTAAAGTGAATAATGA
66 AATGTA-AAAGAATTCAAACTAAAATCAATTATGAGATTATAAAACCATTTAAAG-GAATAATAA
* **
3923 GGCTTTTGAAGGAATAGGTGACTATAAATGGACTTTTCTTNN
129 GGCTTTTAAAGGAATAGGTGACTATAAATGGACTTTTCTTGC
******** ** * * * * * *
3965 NNNNNNNNGTGTTTTTCTTCATG-TTTCCTAGGACAAACATTCAATTATAAT-TTTTTCTAACTA
1 CAATGAATGCCTTTTTCTTCATGTTTTTCAAGG-TAGACATTCAATTATAATCTGTTT-TAACAA
* * * *
4028 AAAATATAAACA-AATTCAATCTAAAATCAATTATGAGACTATAAAACCATTTAAAGTGAGTAAT
64 AAAATGTAAA-AGAATTCAAACTAAAATCAATTATGAGATTATAAAACCATTTAAAG-GAATAAT
******************** *
4092 NNNNNNNNNNNNNNNNNNNNTGACTATAAATGGGCTTTTCTTGC
127 AAGGCTTTTAAAGGAATAGGTGACTATAAATGGACTTTTCTTGC
* ** * * * * *
4136 CAATGAATACCTTTTTCTTCATGTTTCCCAGGGCAAACATTCAATTATAATCTGTTCTAACCAAA
1 CAATGAATGCCTTTTTCTTCATGTTTTTCAAGGTAGACATTCAATTATAATCTGTTTTAACAAAA
* * * *
4201 ACTGAAAAAAAATTCAATCTAAAATCAATTATGAGATTATAAAACC
66 AATGTAAAAGAATTCAAACTAAAATCAATTATGAGATTATAAAACC
4247 NNNNNNNNNN
Statistics
Matches: 843, Mismatches: 272, Indels: 50
0.72 0.23 0.04
Matches are distributed among these distances:
169 3 0.00
170 64 0.08
171 428 0.51
172 342 0.41
173 6 0.01
ACGTcount: A:0.36, C:0.12, G:0.11, T:0.34
Consensus pattern (170 bp):
CAATGAATGCCTTTTTCTTCATGTTTTTCAAGGTAGACATTCAATTATAATCTGTTTTAACAAAA
AATGTAAAAGAATTCAAACTAAAATCAATTATGAGATTATAAAACCATTTAAAGGAATAATAAGG
CTTTTAAAGGAATAGGTGACTATAAATGGACTTTTCTTGC
Found at i:4666 original size:173 final size:172
Alignment explanation
Indices: 4365--4978 Score: 714
Period size: 172 Copynumber: 3.6 Consensus size: 172
4355 NNNNNNNNNN
* *
4365 TTTTTCTACATGTTTCTTGAGGTAGACATTCAATTATAATCTCTTTTAACCAAAAATATAAAACA
1 TTTTTCTACATGTTTCTTAAGGTAGACATTCAATTATAATCTCTTTTAACCAAAAATATAAAAAA
* * *
4430 AATTCAACTTAAAATCAATTTTGATATTATAAAACCATTTAATGCGAGTAACAAGGCTTTTGAAA
66 AATTCAACTTAAAATCAATTTTGAAATTATAAAACCATTTAATGTGAGTAATAAGGCTTTTGAAA
* * *
4495 GAATGAGTGACTATAAATAGAATTTTTTTGCCAATGAATAGC
131 GAATGGGTGACTATAAATGGACTTTTTTTGCCAATGAATAGC
* * * *
4537 TTTTTCTACATGTTTGTTAAGGTAGACATTTAATTATAATCTCTTTTAACCTAAAATGTAAAAAA
1 TTTTTCTACATGTTTCTTAAGGTAGACATTCAATTATAATCTCTTTTAACCAAAAATAT-AAAAA
4602 AAATTCAACTTAAAATCAATTTTGAAATTATAAAACCATTTAATGTGAGTAATAATGG-TTTTGA
65 AAATTCAACTTAAAATCAATTTTGAAATTATAAAACCATTTAATGTGAGTAATAA-GGCTTTTGA
* *
4666 AAGAATGGGTGACTATAAATGGACTTTTTTGGCCAATGAATACC
129 AAGAATGGGTGACTATAAATGGACTTTTTTTGCCAATGAATAGC
* *********** *
4710 TTTTTCTACATGTTTCTTGAGGTAGACATTCANNNNNNNNNNGTTTTAACTAAAAATATAAAAAA
1 TTTTTCTACATGTTTCTTAAGGTAGACATTCAATTATAATCTCTTTTAACCAAAAATATAAAAAA
* * ** * * *
4775 AAATCAACTTAAAATCAATTTTGAGATTATAAAATTATTGAATTTGAGTAATAAGGCTTTTGAAG
66 AATTCAACTTAAAATCAATTTTGAAATTATAAAACCATTTAATGTGAGTAATAAGGCTTTTGAAA
** * ** *
4840 GAATGGGTGACTATAAGCGGACTTTTCTTGTTAATGAGT-GCC
131 GAATGGGTGACTATAAATGGACTTTTTTTGCCAATGAATAG-C
* * * * * * **
4882 TTTTTCTTCACGTTTCTCCAA-GTAGGCATTCAATTATAATCTATTTTAACAAAAAATATGTAAA
1 TTTTTCTACATGTTTCT-TAAGGTAGACATTCAATTATAATCTCTTTTAACCAAAAATATAAAAA
*
4946 GAATTCAACTTAAAATCAATTTT-AATATTATAA
65 AAATTCAACTTAAAATCAATTTTGAA-ATTATAA
4979 NNNNNNNNNN
Statistics
Matches: 368, Mismatches: 68, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
171 3 0.01
172 219 0.60
173 144 0.39
174 2 0.01
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.37
Consensus pattern (172 bp):
TTTTTCTACATGTTTCTTAAGGTAGACATTCAATTATAATCTCTTTTAACCAAAAATATAAAAAA
AATTCAACTTAAAATCAATTTTGAAATTATAAAACCATTTAATGTGAGTAATAAGGCTTTTGAAA
GAATGGGTGACTATAAATGGACTTTTTTTGCCAATGAATAGC
Found at i:7878 original size:171 final size:162
Alignment explanation
Indices: 7701--8013 Score: 324
Period size: 171 Copynumber: 1.9 Consensus size: 162
7691 NNNNNNNNNA
* * * *
7701 CATTCATTAGCAAGAAAAGTCCATTTATAGTGACCCATTCCTTCAAAAG-CTTCATTATTCACTT
1 CATTCATTAGCAAAAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGTCTT-ATTACTCAATT
* * * * *
7765 TAAATGGTTATATAATCTCAAAATTAATTTTAATTTG-ATTCTTTGTACGTTTTTTGTTAAAACA
65 CAAATGCTTATATAATCTCAAAATTAATTTCAATTTGAATTCTTTGTACATTTTTAGTTAAAACA
*
7829 GATTATAATTGAATGTNNNNNNNNNNAAACAAGAAAAGAAATG
130 AATTATAATTGAATGT----------AAACAAGAAAAGAAATG
* ** * *
7872 CATTCATTGGCAAAAAAAGTTTATTTATAGTCACGCATTCCTTTAAAAGTCTTATTACTCAATTC
1 CATTCATTAGCAAAAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGTCTTATTACTCAATTC
* * * * * *
7937 AAATTCTTTTATAATCTCAAAATTGATTTCAGTTTGAATTGTTTGTGCATTTTTAGTTAAAACAA
66 AAATGCTTATATAATCTCAAAATTAATTTCAATTTGAATTCTTTGTACATTTTTAGTTAAAACAA
8002 ATTATAATTGAA
131 ATTATAATTGAA
8014 AGTCTACCTT
Statistics
Matches: 119, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
171 81 0.68
172 38 0.32
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.39
Consensus pattern (162 bp):
CATTCATTAGCAAAAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGTCTTATTACTCAATTC
AAATGCTTATATAATCTCAAAATTAATTTCAATTTGAATTCTTTGTACATTTTTAGTTAAAACAA
ATTATAATTGAATGTAAACAAGAAAAGAAATG
Found at i:9083 original size:171 final size:172
Alignment explanation
Indices: 8798--10829 Score: 455
Period size: 172 Copynumber: 11.8 Consensus size: 172
8788 NNNNNNNNNN
* * * *
8798 AACAGATTATAATTGAATATCTACCTTAGGAAACATGAAGAAAAAGGTATTCATCGGCAAGAAAA
1 AACAGATTATAATTGAATGTCTACCTTAGGAAACATGAAGAAAAAGGCATTCATCAGCAAAAAAA
********** * * *
8863 GCCCATTTATAGTCACCCATTCCTTCNNNNNNNNNNTTACTCACTTTAAATGGTTTTATAGTCTC
66 GCCCATTTATAGTCACCCATTCCTTCAAAAGCCTCATTACTCACTTTAAATGGTTATACAATCTC
* * *
8928 ATAATTGATTTTAGA-TTAAATAT-TTT-TACATTTTTAGTTAG
131 AAAATTAATTTTA-ATTTAAAT-TCTTTGTACATTTTTAGTTAA
* * *
8969 AACAGATTATAATTGAATGTCTGTCC-TGGGAAACATGAAGAAAAAGGCATTCATTAGCAAAAAA
1 AACAGATTATAATTGAATGTCT-ACCTTAGGAAACATGAAGAAAAAGGCATTCATCAGCAAAAAA
* * * *
9033 AGTCCATTTATGGTCACCCATTCTTTCAAAAGCCTCATTATTCACTTTAAATGGTTATACAATCT
65 AGCCCATTTATAGTCACCCATTCCTTCAAAAGCCTCATTACTCACTTTAAATGGTTATACAATCT
* *
9098 CAAAATTAATTTTAATTTGAATTCTTTGTACATTTTTTGTTAA
130 CAAAATTAATTTTAATTTAAATTCTTTGTACATTTTTAGTTAA
****************************** ** *
9141 AACAGATTATAATTGAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATTGGCAAGAAAA
1 AACAGATTATAATTGAATGTCTACCTTAGGAAACATGAAGAAAAAGGCATTCATCAGCAAAAAAA
* * ** * * * * * * * * *
9206 GTCTATTTATAGTCACTTATTCTTTTAAAAGCCTTATTGCTCAATTCAAATTGTTTTATAATCTC
66 GCCCATTTATAGTCACCCATTCCTTCAAAAGCCTCATTACTCACTTTAAATGGTTATACAATCTC
* * *
9271 AAAATTGATTTT-AGTTAGAATTCTTTGTATATTTTTAGTTAA
131 AAAATTAATTTTAATTTA-AATTCTTTGTACATTTTTAGTTAA
* * * ** *
9313 AACAAATTATAATTGAAAGTCTACCTT-GAGAAACATGAAAAAAAAAGGCA-TCATTGGCAAGAA
1 AACAGATTATAATTGAATGTCTACCTTAG-GAAACATG-AAGAAAAAGGCATTCATCAGCAAAAA
** ********** * * * * * ** *
9376 AAGTTCATTTANNNNNNNNNNTTCCTTTAAAAGCCTTATTACTCAATTTAAATGATTTTGTAATT
64 AAGCCCATTTATAGTCACCCATTCCTTCAAAAGCCTCATTACTCACTTTAAATGGTTATACAATC
* * * * * * *
9441 TTATAA-TAGATTTTAGGTTCAAATT-TTTTTACATTTTTGGTTAG
129 TCAAAATTA-ATTTTA-ATTTAAATTCTTTGTACATTTTTAGTTAA
** * * * ** *
9485 AGTAAATTATAATTGAATGTCTGA-CTTAGGAAACAT-AAAAAAAAGGTATTCATTTGCAAGAAA
1 AACAGATTATAATTGAATGTCT-ACCTTAGGAAACATGAAGAAAAAGGCATTCATCAGCAAAAAA
* * * * ********** *
9548 AGCCCATTTGTAGTCATCTATTCCTTCAAAAGCCTTATTACNNNNNNNNNNTGGCTT-TATAATC
65 AGCCCATTTATAGTCACCCATTCCTTCAAAAGCCTCATTACTCACTTTAAATGG-TTATACAATC
* * * * * *
9612 TCATAATTGATTTTAGA-TTCAATT-TTTTTACATATTT-GTTTAG
129 TCAAAATTAATTTTA-ATTTAAATTCTTTGTACATTTTTAG-TTAA
* * * ** * *
9655 AATAGATTATAATTGAATGTGTA-CTCTAAGAAACAT-AGAGCAAAAA-ATATTTAT-TG-ATAA
1 AACAGATTATAATTGAATGTCTACCT-TAGGAAACATGA-AG-AAAAAGGCATTCATCAGCA-AA
* * ** * * * *
9715 GAAAAGTCCATTTATAGTCACCCATTCCTTTAAAAGTTTTATTACTCACTTTAAATGATTTTATA
62 -AAAAGCCCATTTATAGTCACCCATTCCTTCAAAAGCCTCATTACTCACTTTAAATGGTTATACA
* * * * **************
9780 AGCTCAAAATTGATTTGAATTTGAATTCTTTGTNNNNNNNNNNNNNN
126 ATCTCAAAATTAATTTTAATTTAAATTCTTTGTACATTTTTAGTTAA
* * * ** * *
9827 NACAGATTATAATTGAATGTCTACCTT-GAGAAATATGAAGAAAAAGACATTCATTGGTAAGAAA
1 AACAGATTATAATTGAATGTCTACCTTAG-GAAACATGAAGAAAAAGGCATTCATCAGCAAAAAA
* * * ** ** * * * * * * *
9891 AGTCTATTTATAATCGTCCATTTTTTCAATAGCCTTATTAC-CTAGTTTAAATAGTTTTATAAAC
65 AGCCCATTTATAGTCACCCATTCCTTCAAAAGCCTCATTACTC-ACTTTAAATGGTTATACAATC
* ** * * * * * *
9955 TCATAATCGATTTTAAGTTGATTTTTTTTTACATTTTTGGTTAA
129 TCAAAATTAATTTTAATTTAAATTCTTTGTACATTTTTAGTTAA
* * * * * * * * ** **
9999 AA-A-ATGCTATAATTGAATGTCTGCCTTGGGGAACGTAAAGCAAAAGCCATCCATTGGCATGAA
1 AACAGAT--TATAATTGAATGTCTACCTTAGGAAACATGAAGAAAAAGGCATTCATCAGCAAAAA
*** ** ** ** * * ** * * * *
10062 AATTTCATTTATAGTCACTGAAGCCTTTGAAAGCCTTATTGCTTGCTTTAAATAGTTTTATAACC
64 AAGCCCATTTATAGTCACCCATTCCTTCAAAAGCCTCATTACTCACTTTAAATGGTTATACAATC
* * * * *
10127 T-AATAATTGATTTTAAGTTAAATAT-TTT-AACATTTTTGGTTAG
129 TCAA-AATTAATTTTAATTTAAAT-TCTTTGTACATTTTTAGTTAA
* ********** * ** *
10170 AACAGATTATAATTGAATCTCTACCTTAGGAAACNNNNNNNNNNAGGTATTCATTGGCAAGAAAA
1 AACAGATTATAATTGAATGTCTACCTTAGGAAACATGAAGAAAAAGGCATTCATCAGCAAAAAAA
* * ** * * * * *
10235 GTCCATTTATAGCCACTTATTCCATCAAAAGCCAT-ATTACTCACTTTAAATGTTTTTATAATTT
66 GCCCATTTATAGTCACCCATTCCTTCAAAAGCC-TCATTACTCACTTTAAATGGTTATACAATCT
* * * * ** *
10299 CAACATTGATTTTAAGTTCAAATT-TTTTTACATTGATGGTTAA
130 CAAAATTAATTTTAA-TTTAAATTCTTTGTACATTTTTAGTTAA
* * * * * * * ** * *
10342 AACATATTATAATTGAGTGTTTATCTCAAGAAA-ATTTAAGAAAAAGATATGCA-CTGGCAAGAA
1 AACAGATTATAATTGAATGTCTACCTTAGGAAACA-TGAAGAAAAAGGCATTCATC-AGCAA-AA
* * * * * ********** * *
10405 AAA-TCCGTTTATAGTTACTCATTCCTTCAAAAGCCTTATTNNNNNNNNNNAATGGTTTTATAAT
63 AAAGCCCATTTATAGTCACCCATTCCTTCAAAAGCCTCATTACTCACTTTAAATGGTTATACAAT
* * * *
10469 CTTAAAATTGATTTTAAGTCAAATTCTTTGTACATCTTTT-GTTAA
128 CTCAAAATTAATTTTAATTTAAATTCTTTGTACAT-TTTTAGTTAA
* ** * * ** *
10514 AATAGATTATAATTGAATACCTA-CTTA-GAAAAATGTGCAGAAAAAGGCATTCATTGGCAAGAA
1 AACAGATTATAATTGAATGTCTACCTTAGGAAACA--TGAAGAAAAAGGCATTCATCAGCAAAAA
* * * * * * * * *
10577 AAGTCCGTTTATAGTCACTCATTCCATCAAAAGCCTTATTACTCACATTAAATTGTTTTATAATC
64 AAGCCCATTTATAGTCACCCATTCCTTCAAAAGCCTCATTACTCACTTTAAATGGTTATACAATC
* * * * * *
10642 TCAAAATTCATTTTAAGTTGAATTTTTTTTTTACATTTTTGGTTAA
129 TCAAAATTAATTTTAA-TTTAA-ATTCTTTGTACATTTTTAGTTAA
* * * * ** *
10688 AACAGATTATAATTGAATATCTACCTTAAGAAACATGTAGAGAAAGGTC-TTCATTGGCAAAATA
1 AACAGATTATAATTGAATGTCTACCTTAGGAAACATGAAGAAAAAGG-CATTCATCAGCAAAAAA
** * * * * * *
10752 AGTTCATTTATAGTCACTCATTCTTTCAAAAGCCTTATTACTCACATTAAATGGTTTTATAATCT
65 AGCCCATTTATAGTCACCCATTCCTTCAAAAGCCTCATTACTCACTTTAAATGGTTATACAATCT
*
10817 CAAAATTGATTTT
130 CAAAATTAATTTT
10830 NNNNNNNNNN
Statistics
Matches: 1366, Mismatches: 434, Indels: 119
0.71 0.23 0.06
Matches are distributed among these distances:
169 5 0.00
170 75 0.05
171 396 0.29
172 718 0.53
173 28 0.02
174 134 0.10
175 5 0.00
176 5 0.00
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.37
Consensus pattern (172 bp):
AACAGATTATAATTGAATGTCTACCTTAGGAAACATGAAGAAAAAGGCATTCATCAGCAAAAAAA
GCCCATTTATAGTCACCCATTCCTTCAAAAGCCTCATTACTCACTTTAAATGGTTATACAATCTC
AAAATTAATTTTAATTTAAATTCTTTGTACATTTTTAGTTAA
Found at i:9369 original size:172 final size:170
Alignment explanation
Indices: 9190--10829 Score: 1022
Period size: 172 Copynumber: 9.5 Consensus size: 170
9180 NNNNNNNNNN
* * * * * *
9190 TTCATTGGCAAGAAAAGTCTATTTATAGTCACTTATTCTTTTAAAAGCCTTATTGCTCAATTCAA
1 TTCATTGGCAAGAAAAGTCCATTTATAGTCACTCATTCCTTCAAAAGCCTTATTACTCAATTTAA
* * * *
9255 ATTGTTTTATAATCTCAAAATTGATTTT-AGTTAGAATTCTTTGTATATTTTTAGTTAAAACAAA
66 ATTGTTTTATAATCTCAAAATTGATTTTAAGTTA-AATT-TTTTTACATTTTTGGTTAAAACAGA
* *
9319 TTATAATTGAAAGTCTACCTTGAGAAACATGAAAAAAAAAGGCA
129 TTATAATTGAATGTCTACCTT-AGAAACATG-AAGAAAAAGGCA
* ********** *
9363 -TCATTGGCAAGAAAAGTTCATTTANNNNNNNNNNTTCCTTTAAAAGCCTTATTACTCAATTTAA
1 TTCATTGGCAAGAAAAGTCCATTTATAGTCACTCATTCCTTCAAAAGCCTTATTACTCAATTTAA
* * * * * * * ** *
9427 A-TGATTTTGTAATTTTATAATAGATTTTAGGTTCAAATTTTTTTACATTTTTGGTTAGAGTAAA
66 ATTG-TTTTATAATCTCAAAATTGATTTTAAGTT-AAATTTTTTTACATTTTTGGTTAAAACAGA
* *
9491 TTATAATTGAATGTCTGA-CTTAGGAAACAT-AAAAAAAAGGTA
129 TTATAATTGAATGTCT-ACCTTA-GAAACATGAAGAAAAAGGCA
* * * ********
9533 TTCATTTGCAAGAAAAGCCCATTTGTAGTCA-TCTATTCCTTCAAAAGCCTTATTACNNNNNNNN
1 TTCATTGGCAAGAAAAGTCCATTTATAGTCACTC-ATTCCTTCAAAAGCCTTATTACTCAATTTA
** * * * * * * * *
9597 NNTGGCTTTATAATCTCATAATTGATTTT-AGATTCAATTTTTTTACATATTTGTTTAGAATAGA
65 AATTGTTTTATAATCTCAAAATTGATTTTAAG-TTAAATTTTTTTACATTTTTGGTTAAAACAGA
* * **
9661 TTATAATTGAATGTGTACTCTAAGAAACAT-AGAGCAAAAA-ATA
129 TTATAATTGAATGTCTAC-CTTAGAAACATGA-AG-AAAAAGGCA
* ** * * ** *
9704 TTTATTGATAAGAAAAGTCCATTTATAGTCACCCATTCCTTTAAAAGTTTTATTACTCACTTTAA
1 TTCATTGGCAAGAAAAGTCCATTTATAGTCACTCATTCCTTCAAAAGCCTTATTACTCAATTTAA
* * * * * ***************
9769 A-TGATTTTATAAGCTCAAAATTGATTTGAATTTGAATTCTTTGTNNNNNNNNNNNNNNNACAGA
66 ATTG-TTTTATAATCTCAAAATTGATTTTAAGTTAAATT-TTTTTACATTTTTGGTTAAAACAGA
* *
9833 TTATAATTGAATGTCTACCTTGAGAAATATGAAGAAAAAGACA
129 TTATAATTGAATGTCTACCTT-AGAAACATGAAGAAAAAGGCA
* * * * ** * *
9876 TTCATTGGTAAGAAAAGTCTATTTATAATC-GTCCATTTTTTCAATAGCCTTATTAC-CTAGTTT
1 TTCATTGGCAAGAAAAGTCCATTTATAGTCACT-CATTCCTTCAAAAGCCTTATTACTC-AATTT
* * * * **
9939 AAATAGTTTTATAAACTCATAATCGATTTTAAGTTGATTTTTTTTTACATTTTTGGTTAAAA-A-
64 AAATTGTTTTATAATCTCAAAATTGATTTTAAGTT-AAATTTTTTTACATTTTTGGTTAAAACAG
* * * * * * *
10002 ATGCTATAATTGAATGTCTGCCTTGGGGAACGTAAAGCAAAAGCCA
128 AT--TATAATTGAATGTCTACCTT-AGAAACATGAAGAAAAAGGCA
* * * * * ** ** * ***
10048 TCCATTGGCATGAAAATTTCATTTATAGTCACTGAAGCCTTTGAAAGCCTTATTGCTTGCTTTAA
1 TTCATTGGCAAGAAAAGTCCATTTATAGTCACTCATTCCTTCAAAAGCCTTATTACTCAATTTAA
* * * * *
10113 ATAGTTTTATAACCT-AATAATTGATTTTAAGTTAAATATTTTAACATTTTTGGTTAGAACAGAT
66 ATTGTTTTATAATCTCAA-AATTGATTTTAAGTTAAATTTTTTTACATTTTTGGTTAAAACAGAT
* ********** *
10177 TATAATTGAATCTCTACCTTAGGAAACNNNNNNNNNNAGGTA
130 TATAATTGAATGTCTACCTTA-GAAACATGAAGAAAAAGGCA
* * * * *
10219 TTCATTGGCAAGAAAAGTCCATTTATAGCCACTTATTCCATCAAAAGCCATATTACTCACTTTAA
1 TTCATTGGCAAGAAAAGTCCATTTATAGTCACTCATTCCTTCAAAAGCCTTATTACTCAATTTAA
* * ** *
10284 A-TGTTTTTATAATTTCAACATTGATTTTAAGTTCAAATTTTTTTACATTGATGGTTAAAACATA
66 ATTG-TTTTATAATCTCAAAATTGATTTTAAGTT-AAATTTTTTTACATTTTTGGTTAAAACAGA
* * * * * **
10348 TTATAATTGAGTGTTTATCTCAAGAAA-ATTTAAGAAAAAGATA
129 TTATAATTGAATGTCTACCT-TAGAAACA-TGAAGAAAAAGGCA
* * * * * **********
10391 TGCACTGGCAAGAAAAATCCGTTTATAGTTACTCATTCCTTCAAAAGCCTTATTNNNNNNNNNNA
1 TTCATTGGCAAGAAAAGTCCATTTATAGTCACTCATTCCTTCAAAAGCCTTATTACTCAATTTAA
* * * * *
10456 ATGGTTTTATAATCTTAAAATTGATTTTAAGTCAAATTCTTTGTACATCTTTT-GTTAAAATAGA
66 ATTGTTTTATAATCTCAAAATTGATTTTAAGTTAAATT-TTTTTACAT-TTTTGGTTAAAACAGA
** * *
10520 TTATAATTGAATACCTA-CTTAGAAAAATGTGCAGAAAAAGGCA
129 TTATAATTGAATGTCTACCTTAGAAACA--TGAAGAAAAAGGCA
* *
10563 TTCATTGGCAAGAAAAGTCCGTTTATAGTCACTCATTCCATCAAAAGCCTTATTACTCACA-TTA
1 TTCATTGGCAAGAAAAGTCCATTTATAGTCACTCATTCCTTCAAAAGCCTTATTACTCA-ATTTA
* *
10627 AATTGTTTTATAATCTCAAAATTCATTTTAAGTTGAATTTTTTTTTTACATTTTTGGTTAAAACA
65 AATTGTTTTATAATCTCAAAATTGATTTTAAGTT-AA--ATTTTTTTACATTTTTGGTTAAAACA
* * *
10692 GATTATAATTGAATATCTACCTTAAGAAACATGTAGAGAAAGGTC-
127 GATTATAATTGAATGTCTACCTT-AGAAACATGAAGAAAAAGG-CA
* *
10737 TTCATTGGCAA-AATAAGTTCATTTATAGTCACTCATTCTTTCAAAAGCCTTATTACTCACA-TT
1 TTCATTGGCAAGAA-AAGTCCATTTATAGTCACTCATTCCTTCAAAAGCCTTATTACTCA-ATTT
*
10800 AAATGGTTTTATAATCTCAAAATTGATTTT
64 AAATTGTTTTATAATCTCAAAATTGATTTT
10830 NNNNNNNNNN
Statistics
Matches: 1098, Mismatches: 318, Indels: 101
0.72 0.21 0.07
Matches are distributed among these distances:
169 1 0.00
170 69 0.06
171 278 0.25
172 582 0.53
173 27 0.02
174 129 0.12
175 6 0.01
176 6 0.01
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.38
Consensus pattern (170 bp):
TTCATTGGCAAGAAAAGTCCATTTATAGTCACTCATTCCTTCAAAAGCCTTATTACTCAATTTAA
ATTGTTTTATAATCTCAAAATTGATTTTAAGTTAAATTTTTTTACATTTTTGGTTAAAACAGATT
ATAATTGAATGTCTACCTTAGAAACATGAAGAAAAAGGCA
Found at i:11438 original size:172 final size:171
Alignment explanation
Indices: 10972--11439 Score: 492
Period size: 172 Copynumber: 2.7 Consensus size: 171
10962 NNNNNNNNNN
* * * * *
10972 TAAATGGTTTTATAATCTCATAATTGATTTTAGATTGAATATTTTTACATTTTTGGTTAGAACGG
1 TAAATGATGTTATAATCTCATAATTGATTTAAG-TTGAATTTTTTTACATTTTTGGTTAGAACAG
* * * * *
11037 ATTATAATTGAATGTCTA-CCTTGGGAAACATAAAG-GAAAAGGTATTTATTAGCAAGAAAAGCC
65 ATTATAATTGAATGTC-AGCCTTAGGAAACGTAAAGAAAAAAGGTATTCATTAGCAAAAAAAGCC
* *
11100 TATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTTACAT
129 TATTTATAGTCACCCAGTCCTTCAAAAGCCTTATTACTCACAT
* * * * * * * *
11143 TAAATGGTTTTATAATCTCATAATAGATTTTAGGTTGAATTCTTTTACATTTTTTGTTGGAACAT
1 TAAATGATGTTATAATCTCATAATTGA-TTTAAGTTGAATTTTTTTACATTTTTGGTTAGAACAG
* * * * * * *
11208 ATTAGAATTCAATGTCTGCCTTAGGAAATGAAAAGAAAAAAAGTTTTCATTAGCAAAAAAAGTCC
65 ATTATAATTGAATGTCAGCCTTAGGAAACGTAAAGAAAAAAGGTATTCATTAGCAAAAAAAG-CC
* * * *
11273 -ATTTATAGTCACCTAGTCTTTCAAAATCCTTATTACTCACTT
129 TATTTATAGTCACCCAGTCCTTCAAAAGCCTTATTACTCACAT
* * * * * *
11315 TAAATTATGTTATAATCTCAAAATTGATTGTAAGTTAAATTTTTTTACGTTTTTGGTTAAAATAG
1 TAAATGATGTTATAATCTCATAATTGATT-TAAGTTGAATTTTTTTACATTTTTGGTTAGAACAG
* * * * *
11380 AATATAATTGAATGTCAGCCTTAGGAAACGTGAAGAAAAAAGGCATTCGTTGGCAAAAAA
65 ATTATAATTGAATGTCAGCCTTAGGAAACGTAAAGAAAAAAGGTATTCATTAGCAAAAAA
11440 GGCATTTGTT
Statistics
Matches: 239, Mismatches: 53, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
171 80 0.33
172 157 0.66
173 2 0.01
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.38
Consensus pattern (171 bp):
TAAATGATGTTATAATCTCATAATTGATTTAAGTTGAATTTTTTTACATTTTTGGTTAGAACAGA
TTATAATTGAATGTCAGCCTTAGGAAACGTAAAGAAAAAAGGTATTCATTAGCAAAAAAAGCCTA
TTTATAGTCACCCAGTCCTTCAAAAGCCTTATTACTCACAT
Found at i:11457 original size:20 final size:19
Alignment explanation
Indices: 11415--11459 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
11405 AAACGTGAAG
11415 AAAAAAGGCATTCGTTGGC
1 AAAAAAGGCATTCGTTGGC
*
11434 AAAAAAGGCATTTGTTGGC
1 AAAAAAGGCATTCGTTGGC
11453 AAAAAAG
1 AAAAAAG
11460 TCCATTTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.44, C:0.11, G:0.24, T:0.20
Consensus pattern (19 bp):
AAAAAAGGCATTCGTTGGC
Found at i:11465 original size:20 final size:19
Alignment explanation
Indices: 11415--11466 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
11405 AAACGTGAAG
* *
11415 AAAAAAGGCATTCGTTGGC
1 AAAAAAGCCATTTGTTGGC
*
11434 AAAAAAGGCATTTGTTGGC
1 AAAAAAGCCATTTGTTGGC
11453 AAAAAAGTCCATTT
1 AAAAAAG-CCATTT
11467 ATAGTCACCC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 25 0.83
20 5 0.17
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.25
Consensus pattern (19 bp):
AAAAAAGCCATTTGTTGGC
Found at i:11981 original size:171 final size:169
Alignment explanation
Indices: 11600--12880 Score: 649
Period size: 171 Copynumber: 7.5 Consensus size: 169
11590 TTAAAAGCCC
* * * ** *
11600 TATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTCGGTTTAATTTTTTTACATTTT
1 TATTACTCACTTTAAATGATTTTATAATCTCAAAATTGA-TTTAAGTTGAA-TTTTTTACATTTT
* * ** *** * * *
11665 TTGTTAGAACAAATTATAAGTGAATGT-TTTTCTTGGGAAATGTGAAGAAAAAGATATTCATTAG
64 TTGTTAGAACATATTATAATTGAATGTCTACTCTCAAGAAACGTGAAGAAAAAGTTATTCATTGG
* * *
11729 TAAGAAAAGCCCATTTACAGTCACCTATTCCTTCAAAAGCCT
129 TAAGAAAAGTCCATTTATAGTCACC-ATTCCTTCAAAAACCT
* * *
11771 TATTTCTCACTTTAAATGATTTTATAAACT-AATAATTGATTTAAGATTGAATTCTTTTGCATTT
1 TATTACTCACTTTAAATGATTTTATAATCTCAA-AATTGATTTAAG-TTGAATT-TTTTACATTT
* *
11835 TTTGTTTGAACATATTATAATTGAATGTCTGCTC-CAAGAAACGTGAAGAAAAAGTTATTCATTG
63 TTTGTTAGAACATATTATAATTGAATGTCTACTCTCAAGAAACGTGAAGAAAAAGTTATTCATTG
*
11899 GTAAGAAAAGTCCATTTATAGTAATCCATTCCTTCAAAAACCT
128 GTAAGAAAAGTCCATTTATAGTCA-CCATTCCTTCAAAAACCT
********** * *
11942 TATTACTCACNNNNNNNNNNTTTATAATCTCAAAATTGATTTTAAGTTGAGGTTTTTTTCA-TTT
1 TATTACTCACTTTAAATGATTTTATAATCTCAAAATTGA-TTTAAGTTGA-ATTTTTTACATTTT
* * * * *
12006 TTGACTAAAAAATATTATAATTGATTGTCTAC-CTCAAGAAACGTGAAGAGAAA-TATATTCATT
64 TTG-TTAGAACATATTATAATTGAATGTCTACTCTCAAGAAACGTGAAGAAAAAGT-TATTCATT
* **********
12069 GGTATA-AAAAGTCTATTTATAGTCACCCATTCCNNNNNNNNNNT
127 GGTA-AGAAAAGTCCATTTATAGTCA-CCATTCCTTCAAAAACCT
* * * *
12113 TATTACCCACTTTAAATGATTTTATAATCTCAAAATTGGTTTTAAGCTCAATTTTTTTTTTAACA
1 TATTACTCACTTTAAATGATTTTATAATCTCAAAATT-GATTTAAGTTGAA----TTTTTT-ACA
* * * * * * **********
12178 TTTTTGGTTAAAATAGATTATAATTGAATGTCTAC-CT-AGACAAACATGAAGAANNNNNNNNNN
60 TTTTTTGTTAGAACATATTATAATTGAATGTCTACTCTCA-AGAAACGTGAAGAAAAAGTTATTC
* * * * **
12241 ATTGATAAGAAAAGTCTATTTATAGTCACTCATTCCTTTAGAAGTCT
124 ATTGGTAAGAAAAGTCCATTTATAGTCAC-CATTCCTTCAAAAACCT
* * * * * *
12288 TATTACTCACTTTGAATGGTTTTATAATATCAAAATTAATTTTAAATTGAATTTTTTA-ATAATT
1 TATTACTCACTTTAAATGATTTTATAATCTCAAAATTGA-TTTAAGTTGAATTTTTTACAT-TTT
* * ** *
12352 TTG---G--C------TAATTGAATGTCTAC-CTCATGAAACGTGAAGAATAAGACATTTATTGG
64 TTGTTAGAACATATTATAATTGAATGTCTACTCTCAAGAAACGTGAAGAAAAAGTTATTCATTGG
* * * *
12405 CAAGAAAAGTCCATTTATAGTCACTCATACCTTTAAAAGCCT
129 TAAGAAAAGTCCATTTATAGTCAC-CATTCCTTCAAAAACCT
* * ********** * **
12447 TGTTACTCGCTNNNNNNNNNNTTATAATCTCAAAATTGATTTTAAGTTTAATCTTTTTTTATATT
1 TATTACTCACTTTAAATGATTTTATAATCTCAAAATTGA-TTTAAGTTGAAT-TTTTTACAT-TT
* * * * ** * **
12512 TTTGATTAAAATAGATTATAATTAAATGTCTAC-CT-AGAGAAATATGATGAAAAAGGCATTCAT
63 TTTG-TTAGAACATATTATAATTGAATGTCTACTCTCA-AGAAACGTGAAGAAAAAGTTATTCAT
* * * *
12575 TTGCAA-AAAGTGTCCGTTTATAGTCACACATTCCTTCAAAAACCT
126 TGGTAAGAAA-AGTCCATTTATAGTCAC-CATTCCTTCAAAAACCT
* * * * * * *
12620 TATTACTCGCTGTAAA-AAGTTTTATAATCTTATAATTGATTTTAAGTTCATTTTTTTTACATTT
1 TATTACTCACTTTAAATGA-TTTTATAATCTCAAAATTGA-TTTAAGTTGA-ATTTTTTACATTT
* * ** * ** *
12684 TTGGTTA-AA-ATCGATTATAATTAAATGTCTAC-CTTGAGAAATGTGAAGAAAAAGACATTCAC
63 TTTGTTAGAACAT--ATTATAATTGAATGTCTACTCTCAAGAAACGTGAAGAAAAAGTTATTCAT
* * *
12746 TAGTAAGAAAAGTCTATTTATAGTCACACATTCCTTCAAAATCCT
126 TGGTAAGAAAAGTCCATTTATAGTCAC-CATTCCTTCAAAAACCT
* * * * * *
12791 TATTACACATTTTAAATGGTTTTATTATCTCAAAATTGATTTTAAGTTTAAAACTTTTTACATTT
1 TATTACTCACTTTAAATGATTTTATAATCTCAAAATTGA-TTTAAG-TT-GAATTTTTTACATTT
* * * *
12856 TTGGTTAAAATAGATTATAATTGAA
63 TTTGTTAGAACATATTATAATTGAA
12881 CACGTACCGA
Statistics
Matches: 845, Mismatches: 212, Indels: 105
0.73 0.18 0.09
Matches are distributed among these distances:
159 105 0.12
160 6 0.01
161 8 0.01
169 3 0.00
170 22 0.03
171 398 0.47
172 60 0.07
173 115 0.14
174 11 0.01
175 112 0.13
176 5 0.01
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.39
Consensus pattern (169 bp):
TATTACTCACTTTAAATGATTTTATAATCTCAAAATTGATTTAAGTTGAATTTTTTACATTTTTT
GTTAGAACATATTATAATTGAATGTCTACTCTCAAGAAACGTGAAGAAAAAGTTATTCATTGGTA
AGAAAAGTCCATTTATAGTCACCATTCCTTCAAAAACCT
Found at i:13881 original size:172 final size:172
Alignment explanation
Indices: 13703--14067 Score: 414
Period size: 172 Copynumber: 2.1 Consensus size: 172
13693 NNNNNNNNNN
* ** *
13703 CAAGAAAAGTCTATTTATAGTCACTCATTTTTTTAAAAACCTTATTACTCAATTCAAATTG-TTT
1 CAAGAAAAGTCTATTTATAGTCACCCATTCCTTTAAAAACCTAATTACTCAATTCAAA-TGATTT
** *
13767 TATAATCTCAAAATTAATTTCA-GTTTGAATTCT-TTGTATATTTTTAGTTAAAGCAAATTATAA
65 TATAATCTCAAAATTAATTTCAGGTTCAAATT-TGTT-TACATTTTTAGTTAAAGCAAATTATAA
13830 TTGAAAGTCTACCTCAAGAAACGTGAAAAAAAAAGACA-TCATTGG
128 TTGAAAGTCTACCTCAAGAAACGT-AAAAAAAAAGACATTCATTGG
* * * *
13875 CAAGAAAAGTTTATTTATAGTCACCCATTCCTTTAAAAAGCTAATTACTCGATTTAAATGATTTT
1 CAAGAAAAGTCTATTTATAGTCACCCATTCCTTTAAAAACCTAATTACTCAATTCAAATGATTTT
* * * * * * * *
13940 GTAATCTCATAATTCATTTTAGGTTCAAATTTGTTTACATTTTTGGTTAGAGTATATTATAATTG
66 ATAATCTCAAAATTAATTTCAGGTTCAAATTTGTTTACATTTTTAGTTAAAGCAAATTATAATTG
* * * * * **
14005 AATGTTTACCTTAGGAAACGTAAAGAAAAAGTTATTCATTGG
131 AAAGTCTACCTCAAGAAACGTAAAAAAAAAGACATTCATTGG
* *
14047 CAAGAAAAGCCCATTTATAGT
1 CAAGAAAAGTCTATTTATAGT
14068 TATCTACTCC
Statistics
Matches: 160, Mismatches: 29, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
171 12 0.08
172 139 0.87
173 9 0.06
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (172 bp):
CAAGAAAAGTCTATTTATAGTCACCCATTCCTTTAAAAACCTAATTACTCAATTCAAATGATTTT
ATAATCTCAAAATTAATTTCAGGTTCAAATTTGTTTACATTTTTAGTTAAAGCAAATTATAATTG
AAAGTCTACCTCAAGAAACGTAAAAAAAAAGACATTCATTGG
Found at i:14225 original size:171 final size:161
Alignment explanation
Indices: 13949--14277 Score: 306
Period size: 171 Copynumber: 2.0 Consensus size: 161
13939 TGTAATCTCA
* ** * *
13949 TAATTCATTTTAGGTTCAAATTTGTTTACATTTTTGGTTAGAGTATATTATAATTGAATGTTTAC
1 TAATTCATTTTAGATTCAAATTTGTTTACATTTTTGGTTAGAACAGATTATAATTGAATGTCTAC
* * * *
14014 CTTAGGAAACGTAAAGAAAAAGTTATTCATTGGCAAGAAAAGCCCATTTATAGTTATCTAC-TCC
66 CTGAGAAAACATAAAGAAAAAGTTATTCATTGGCAAGAAAAGCCCATTTATAGTCA-C-ACATCC
14078 TTCAAAAGCCTTATTACTCACATTAAATGGCTT
129 TTCAAAAGCCTTATTACTCACATTAAATGGCTT
* * * *
14111 NNNNNNNNNNTAATTGATTTTAGATT-GAATTTTTTTACATTTTTGTTTAGAACAGATTATAATT
1 ----------TAATTCATTTTAGATTCAAATTTGTTTACATTTTTGGTTAGAACAGATTATAATT
** * *
14175 GAATGTCTACTCTGA-AAAACATAGCGAAAAAGATT-TTCATTGGTAAGAAAAGTCCATTTATAG
56 GAATGTCTAC-CTGAGAAAACATAAAGAAAAAG-TTATTCATTGGCAAGAAAAGCCCATTTATAG
* * * *
14238 TCACACATTCCTTTAAAAGCTTTATTGCTCACTTTAAATG
119 TCACACA-TCCTTCAAAAGCCTTATTACTCACATTAAATG
14278 ATTTTATAAG
Statistics
Matches: 132, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
169 2 0.02
170 1 0.01
171 110 0.83
172 19 0.14
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.38
Consensus pattern (161 bp):
TAATTCATTTTAGATTCAAATTTGTTTACATTTTTGGTTAGAACAGATTATAATTGAATGTCTAC
CTGAGAAAACATAAAGAAAAAGTTATTCATTGGCAAGAAAAGCCCATTTATAGTCACACATCCTT
CAAAAGCCTTATTACTCACATTAAATGGCTT
Found at i:15574 original size:171 final size:171
Alignment explanation
Indices: 15269--15751 Score: 518
Period size: 171 Copynumber: 2.8 Consensus size: 171
15259 NNNNNNTTTT
* * * * * *
15269 TTTTTTTACATTTTTGATGAAAACAAATTATAATTGAATGTCTACCTTAAGAAACATGTAGAAAA
1 TTTTTTTACATTTTTGGTTAGAACAAATTATAATTGAATGTCTACCTTAGGAAATATGAAGAAAA
* ********** *
15334 AGGTATTCATTGCCAAAAAAAGTCCATTTATAGTCACCCATTNNNNNNNNNNCCTTATTACTCAC
66 AGGTATTCATTGGCAAAAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGCCTTAATACTCAC
* *
15399 ATTAAATGGTTTCATAATTTCAAAATTGATTTTAGACTGAA
131 ATTAAATGGTTTCATAATCTCAAAATAGATTTTAGACTGAA
* * * *
15440 TTTTTTTACATATTTGGTTAGAACAGATTATAATTGAATGTCTACCTTTGGAAATATGAAGGAAA
1 TTTTTTTACATTTTTGGTTAGAACAAATTATAATTGAATGTCTACCTTAGGAAATATGAAGAAAA
* *
15505 AGGTATTCATTGGCAAAAAAAG-CCTATTTATAGTCACCTATTCCTTCAAAAGCCTTAATACTTA
66 AGGTATTCATTGGCAAAAAAAGTCC-ATTTATAGTCACCCATTCCTTCAAAAGCCTTAATACTCA
* * **
15569 CATTAAATGGTTTTATAATCTCATAATAGATTTTAGGTTGAA
130 CATTAAATGGTTTCATAATCTCAAAATAGATTTTAGACTGAA
** * * * * *
15611 TTCATTTACATTTTTTGTTAGAACATATTAGAATTGAATGTCTGCCTTAGGAAATAAGAAGAAAA
1 TTTTTTTACATTTTTGGTTAGAACAAATTATAATTGAATGTCTACCTTAGGAAATATGAAG-AAA
* * * * * * ** *
15676 AAGTTTTTCATTGGCAAAAACAGTCCGTTTATAGTCACCCAGTCCTTCAACATTCTTATTACTCA
65 AAGGTATTCATTGGCAAAAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGCCTTAATACTCA
*
15741 CTTTAAATGGT
130 CATTAAATGGT
15752 GNNNNNNNNN
Statistics
Matches: 257, Mismatches: 52, Indels: 5
0.82 0.17 0.02
Matches are distributed among these distances:
170 2 0.01
171 190 0.74
172 63 0.25
173 2 0.01
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.37
Consensus pattern (171 bp):
TTTTTTTACATTTTTGGTTAGAACAAATTATAATTGAATGTCTACCTTAGGAAATATGAAGAAAA
AGGTATTCATTGGCAAAAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGCCTTAATACTCAC
ATTAAATGGTTTCATAATCTCAAAATAGATTTTAGACTGAA
Found at i:15793 original size:172 final size:171
Alignment explanation
Indices: 15273--15809 Score: 443
Period size: 171 Copynumber: 3.1 Consensus size: 171
15263 NNTTTTTTTT
* * * * * * * * *
15273 TTTACATTTTTGATGAAAACAAATTATAATTGAATGTCTACCTTAAGAAACATGTAGAAAAAGGT
1 TTTACATTTTTGGTTAGAACAGATTAGAATTGAATGTCTACCTTAGGAAATAAGAAGAAAAAGGT
* * ********** *
15338 ATTCATTGCCAAAAAAAGTCC-ATTTATAGTCACCCATTNNNNNNNNNNCCTTATTACTCACATT
66 ATTCATTGGCAAAAAAAG-CCTATTTATAGTCACCCAGTCCTTCAAAAGCCTTAATACTCACATT
* * *
15402 AAATGGT-TTCATAATTTCAAAATTGATTTT-AGACTGAATTTT
130 AAATGGTGTT-ATAATCTCAAAATTGATTTTAAG-TTGAATTTA
* * * * *
15444 TTTACATATTTGGTTAGAACAGATTATAATTGAATGTCTACCTTTGGAAATATGAAGGAAAAGGT
1 TTTACATTTTTGGTTAGAACAGATTAGAATTGAATGTCTACCTTAGGAAATAAGAAGAAAAAGGT
* * *
15509 ATTCATTGGCAAAAAAAGCCTATTTATAGTCACCTATTCCTTCAAAAGCCTTAATACTTACATTA
66 ATTCATTGGCAAAAAAAGCCTATTTATAGTCACCCAGTCCTTCAAAAGCCTTAATACTCACATTA
* * * * *
15574 AATGGTTTTATAATCTCATAATAGATTTTAGGTTGAATTCA
131 AATGGTGTTATAATCTCAAAATTGATTTTAAGTTGAATTTA
* * * *
15615 TTTACATTTTTTGTTAGAACATATTAGAATTGAATGTCTGCCTTAGGAAATAAGAAGAAAAAAGT
1 TTTACATTTTTGGTTAGAACAGATTAGAATTGAATGTCTACCTTAGGAAATAAGAAG-AAAAAGG
* * * * ** * *
15680 TTTTCATTGGCAAAAACAGTCC-GTTTATAGTCACCCAGTCCTTCAACATTCTTATTACTCACTT
65 TATTCATTGGCAAAAAAAG-CCTATTTATAGTCACCCAGTCCTTCAAAAGCCTTAATACTCACAT
********** *
15744 TAAATGGTGNNNNNNNNNNAAAATTGATTTTAAGTTGAATTTG
129 TAAATGGTGTTATAATCTCAAAATTGATTTTAAGTTGAATTTA
*
15787 TTTACATTTTTGGTTAAAACAGA
1 TTTACATTTTTGGTTAGAACAGA
15810 ATANNNNNNN
Statistics
Matches: 291, Mismatches: 70, Indels: 9
0.79 0.19 0.02
Matches are distributed among these distances:
170 2 0.01
171 182 0.63
172 105 0.36
173 2 0.01
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.36
Consensus pattern (171 bp):
TTTACATTTTTGGTTAGAACAGATTAGAATTGAATGTCTACCTTAGGAAATAAGAAGAAAAAGGT
ATTCATTGGCAAAAAAAGCCTATTTATAGTCACCCAGTCCTTCAAAAGCCTTAATACTCACATTA
AATGGTGTTATAATCTCAAAATTGATTTTAAGTTGAATTTA
Found at i:17566 original size:171 final size:171
Alignment explanation
Indices: 17389--18522 Score: 637
Period size: 170 Copynumber: 6.6 Consensus size: 171
17379 NNNNNNNNNN
* *
17389 TTTATAATCTCATAATTGATTTTAGATTAAAATTTTTTACATTTTTGA-TTAGAACAGAATATAG
1 TTTATAATCTCAAAATTGATTTTAGATTAAAATTTTTTACATTTTT-ACTTAGAACAGAATATAA
* * *
17453 TTGAATGTCTACCCTAG-GAAATATGAAGAAAAAGGTATTCATTAGCAAGAAAAGTCCATTTATA
65 TTGAATGTCTACCCTAGAGAAACATGAAGAAAAAGATATTCATTGGCAAGAAAAGTCCATTTATA
** *
17517 GTCACCTATTTTTTTGAAAGTCTTATT-CGTCACTTTAAATGGT
130 GTCACCTATTCATTTAAAAG-CTTATTAC-TCACTTTAAATGGT
* **
17560 TTTATAATGTCAAAATTGATTTTAG-TTTGAATTCTTTCTACATTTTTACTTAGAACA-AATTAT
1 TTTATAATCTCAAAATTGATTTTAGATTAAAATT-TTT-TACATTTTTACTTAGAACAGAA-TAT
* * * * * *
17623 AATTGAATGTCTA-TCTTGAGAAACGTGAA-AAAAAGACATTCATTGCCAATAAAAGTCCATTTA
63 AATTGAATGTCTACCCTAGAGAAACATGAAGAAAAAGATATTCATTGGCAAGAAAAGTCCATTTA
* **
17686 TAGTCACAC-ATTCATTTAAAAGCGTTATTACTCGCTTTAAATATT
128 TAGTCAC-CTATTCATTTAAAAGC-TTATTACTCACTTTAAATGGT
* * * * * *
17731 TTTATAGTCTCAGAATTGATTTTATATTAAATTTTTTTATATTTTTACTTAGAACAGATTATAAT
1 TTTATAATCTCAAAATTGATTTTAGATTAAAATTTTTTACATTTTTACTTAGAACAGAATATAAT
** * * * * *
17796 TGAATGTCT-GTCTTGAAAAACATAAAGAAAAATG-TATTCATTGGAAAGAAAAGCCCATTTATA
66 TGAATGTCTACCCTAGAGAAACATGAAGAAAAA-GATATTCATTGGCAAGAAAAGTCCATTTATA
* * * * *
17859 GTCA-CTATGCCTTCAAAAGCCTTATTACTCACATTAAATGGC
130 GTCACCTATTCATTTAAAAG-CTTATTACTCACTTTAAATGGT
********** * * * ** * *
17901 TTTANNNNNNNNNNATTGATTTTAGATTGAATTTTTTTACGTTTTTTGTTACAACAGATTATAAT
1 TTTATAATCTCAAAATTGATTTTAGATTAAAATTTTTTACATTTTTACTTAGAACAGAATATAAT
* * * * *
17966 TGAATGTCTGCCCTAG-GAATCATGAAGAAAAAGATATTCATTGGTAAGAAAAGTCTATTTGTAG
66 TGAATGTCTACCCTAGAGAAACATGAAGAAAAAGATATTCATTGGCAAGAAAAGTCCATTTATAG
** * *
18030 TCACCCGTTCCTTCAAAAGCCTTATTACTCACTTTAAATGGT
131 TCACCTATTCATTTAAAAG-CTTATTACTCACTTTAAATGGT
********** ** * * *
18072 NNNNNNNNNNCAAAATTGATTTTA-ATTTGAATTCTTTGTACATTTTCT-GTTAAAACTA-ATTA
1 TTTATAATCTCAAAATTGATTTTAGATTAAAATT-TTT-TACATTTT-TACTTAGAAC-AGAATA
* * * * *** *
18134 TAATCGATTGTGTA-CCTCA-A-AAA-ATGTCAAGAAAAATG-CATTCATTCATAAGAAAAATCC
62 TAATTGAATGTCTACCCT-AGAGAAACATG--AAGAAAAA-GATATTCATTGGCAAGAAAAGTCC
* * * * ***
18194 ATTTATTGTCACCCATTCGTTTAAAGGCCTTATTACTTGTTTTAAATGGT
123 ATTTATAGTCACCTATTCATTTAAAAG-CTTATTACTCACTTTAAATGGT
* * * * ********** ** *
18244 TTTATAATCTCATAATTGATTTTGGGTTGANNNNNNNNNNATTTTTGGTTAGAACAGATTATAAT
1 TTTATAATCTCAAAATTGATTTTAGATTAAAATTTTTTACATTTTTACTTAGAACAGAATATAAT
** * * ** * * * * *
18309 TGAATGT-TTGCCTTGGGAAATGTGAAGAAAAAGGTATTCACTAG-AAAAAAAG-CTCATATATA
66 TGAATGTCTACCCTAGAGAAACATGAAGAAAAAGATATTCATTGGCAAGAAAAGTC-CATTTATA
* * * *
18371 GTCA-CTCATTCCTTCAAAAGCTTTATTACTC-TTGTTAAATGGC
130 GTCACCT-ATTCATTTAAAAGC-TTATTACTCACT-TTAAATGGT
* * * * * * ** *
18414 TTTATAATCTCATAATTCATTTTAGATTGAATTTTTTTATACTTTTGGTTAGAACAGATTATAAT
1 TTTATAATCTCAAAATTGATTTTAGATTAAAATTTTTTACATTTTTACTTAGAACAGAATATAAT
* *
18479 TGAATGTCTACTCT-GAGAAACATGAAGAAAAAGGTATTCATTGG
66 TGAATGTCTACCCTAGAGAAACATGAAGAAAAAGATATTCATTGG
18523 TAGGANNNNN
Statistics
Matches: 746, Mismatches: 177, Indels: 81
0.74 0.18 0.08
Matches are distributed among these distances:
169 7 0.01
170 316 0.42
171 258 0.35
172 158 0.21
173 7 0.01
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.38
Consensus pattern (171 bp):
TTTATAATCTCAAAATTGATTTTAGATTAAAATTTTTTACATTTTTACTTAGAACAGAATATAAT
TGAATGTCTACCCTAGAGAAACATGAAGAAAAAGATATTCATTGGCAAGAAAAGTCCATTTATAG
TCACCTATTCATTTAAAAGCTTATTACTCACTTTAAATGGT
Found at i:18442 original size:513 final size:511
Alignment explanation
Indices: 17389--18524 Score: 1179
Period size: 513 Copynumber: 2.2 Consensus size: 511
17379 NNNNNNNNNN
* * * *
17389 TTTATAATCTCATAATTGATTTTAGATTAAAATTTTTTACATTTTTGATTAGAACAGAATATAGT
1 TTTATAATCTCATAATTGATTTTAGATTGAATTTTTTTACATTTTTG-TTAGAACAGATTATAAT
* *
17454 TGAATGTCTACCCTAGGAAAT-ATGAAGAAAAAGGTATTCATTAGCAAGAAAAGTCCATTTATAG
65 TGAATGTCTACCCTAGG-AATCATGAAGAAAAAGGTATTCATTGGTAAGAAAAGTCCATTTATAG
* ** ** *
17518 TCACCTATTTTTTTGAAAGTCTTATTCGTCACTTTAAATGGTTTTATAATGTCAAAATTGATTTT
129 TCACCCATTCCTTCAAAAGCCTTATTCGTCACTTTAAATGGTTTTATAATGTCAAAATTGATTTT
* * * * ** *
17583 AGTTTGAATTCTTTCTACATTTTTACTTAGAACAAATTATAATTGAATGTCTATCTTGAGAAACG
194 AATTTGAATTCTTTCTACATTTTTACTTAAAACAAATTATAATCGAATGTCTACCTCAAAAAACG
* * * *
17648 TGAAAAAAAGACATTCATTGCCAATAAAAGTCCATTTATAGTCACACATTCATTTAAAAGCGTTA
259 TCAAAAAAAGACATTCATTGCCAAGAAAAATCCATTTATAGTCACACATTCATTTAAAAGCCTTA
* * *
17713 TTACTCGCTTTAAATATTTTTATAGTCTCAGAATTGATTTTATATTAAATTTTTTTATATTTTTA
324 TTACTCGCTTTAAATAGTTTTATAATCTCAGAATTGATTTTAGATTAAATTTTTTTATATTTTTA
* * * *
17778 CTTAGAACAGATTATAATTGAATGTCTGTCTTGAAAAACATAAAGAAAAATGTATTCATTGGAAA
389 CTTAGAACAGATTATAATTGAATGTCTGCCTTGAAAAACATAAAGAAAAAGGTATTCACTAGAAA
*
17843 GAAAAGCCCATTTATAGTCACTATGCCTTCAAAAGCCTTATTACTCACATTAAATGGC
454 GAAAAGCCCATATATAGTCACTATGCCTTCAAAAGCCTTATTACTCACATTAAATGGC
********** * *
17901 TTTANNNNNNNNNNATTGATTTTAGATTGAATTTTTTTACGTTTTTTGTTACAACAGATTATAAT
1 TTTATAATCTCATAATTGATTTTAGATTGAATTTTTTTAC-ATTTTTGTTAGAACAGATTATAAT
* * * *
17966 TGAATGTCTGCCCTAGGAATCATGAAGAAAAAGATATTCATTGGTAAGAAAAGTCTATTTGTAGT
65 TGAATGTCTACCCTAGGAATCATGAAGAAAAAGGTATTCATTGGTAAGAAAAGTCCATTTATAGT
* **********
18031 CACCCGTTCCTTCAAAAGCCTTATTAC-TCACTTTAAATGGTNNNNNNNNNNCAAAATTGATTTT
130 CACCCATTCCTTCAAAAGCCTTATT-CGTCACTTTAAATGGTTTTATAATGTCAAAATTGATTTT
* * * * * *
18095 AATTTGAATTCTTTGTACATTTTCT-GTTAAAACTAATTATAATCGATTGTGTACCTCAAAAAAT
194 AATTTGAATTCTTTCTACATTTT-TACTTAAAACAAATTATAATCGAATGTCTACCTCAAAAAAC
* * * * *
18159 GTCAAGAAAAATG-CATTCATT-CATAAGAAAAATCCATTTATTGTCACCCATTCGTTTAAAGGC
258 GTCAA-AAAAA-GACATTCATTGC-CAAGAAAAATCCATTTATAGTCACACATTCATTTAAAAGC
* * * * * * * **********
18222 CTTATTACTTGTTTTAAATGGTTTTATAATCTCATAATTGATTTTGGGTTGANNNNNNNNNNATT
320 CTTATTACTCGCTTTAAATAGTTTTATAATCTCAGAATTGATTTTAGATTAAATTTTTTTATATT
** * ** ** *
18287 TTTGGTTAGAACAGATTATAATTGAATGTTTGCCTTGGGAAATGTGAAGAAAAAGGTATTCACTA
385 TTTACTTAGAACAGATTATAATTGAATGTCTGCCTTGAAAAACATAAAGAAAAAGGTATTCACTA
* * * ***
18352 GAAA-AAAAGCTCATATATAGTCACTCATTCCTTCAAAAGCTTTATTACTCTTGTTAAATGGC
450 GAAAGAAAAGCCCATATATAGTCACT-ATGCCTTCAAAAGCCTTATTACTCACATTAAATGGC
* * *
18414 TTTATAATCTCATAATTCATTTTAGATTGAATTTTTTTATACTTTTGGTTAGAACAGATTATAAT
1 TTTATAATCTCATAATTGATTTTAGATTGAATTTTTTTACA-TTTTTGTTAGAACAGATTATAAT
* *
18479 TGAATGTCTACTCT-GAGAAACATGAAGAAAAAGGTATTCATTGGTA
65 TGAATGTCTACCCTAG-GAATCATGAAGAAAAAGGTATTCATTGGTA
18525 GGANNNNNNN
Statistics
Matches: 495, Mismatches: 119, Indels: 19
0.78 0.19 0.03
Matches are distributed among these distances:
511 3 0.01
512 216 0.44
513 275 0.56
514 1 0.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.38
Consensus pattern (511 bp):
TTTATAATCTCATAATTGATTTTAGATTGAATTTTTTTACATTTTTGTTAGAACAGATTATAATT
GAATGTCTACCCTAGGAATCATGAAGAAAAAGGTATTCATTGGTAAGAAAAGTCCATTTATAGTC
ACCCATTCCTTCAAAAGCCTTATTCGTCACTTTAAATGGTTTTATAATGTCAAAATTGATTTTAA
TTTGAATTCTTTCTACATTTTTACTTAAAACAAATTATAATCGAATGTCTACCTCAAAAAACGTC
AAAAAAAGACATTCATTGCCAAGAAAAATCCATTTATAGTCACACATTCATTTAAAAGCCTTATT
ACTCGCTTTAAATAGTTTTATAATCTCAGAATTGATTTTAGATTAAATTTTTTTATATTTTTACT
TAGAACAGATTATAATTGAATGTCTGCCTTGAAAAACATAAAGAAAAAGGTATTCACTAGAAAGA
AAAGCCCATATATAGTCACTATGCCTTCAAAAGCCTTATTACTCACATTAAATGGC
Found at i:18462 original size:170 final size:170
Alignment explanation
Indices: 16649--18520 Score: 857
Period size: 171 Copynumber: 11.0 Consensus size: 170
16639 NNNNNNNNNN
* * * *
16649 AAGTCTATTTATAGTCACCTATTCCTTAAAAAGCCTTATTACTCACTTTAAATGCTATTATAATC
1 AAGTC-ATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATC
* * * * * * *****
16714 TCAAAATTAATTTTA-AGTTCAGCTTTTTTTACACTTTTT-GTTAAAACAAATTATAATTNNNNN
65 TCATAATTGATTTTAGA-TTGA-ATTTTTTTACA-TTTTTGGTTAGAACAGATTATAATTGAATG
***** * * * * * * *
16777 NNNNNCTTAAGAAATGTGAAGAAAAAGGAAATCATTGGCAAGAG
127 TCTACCTTGAGAAATATGAAGAAAAAGGTATTCATTAGCAAAAA
* * * * *
16821 AAGCCTATTTATAGTCACCCGTTCCTTCAAATGCCTTATTACTTA-TATTAAATGGCTTTATAAT
1 AAGTC-ATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACT-TTAAATGGTTTTATAAT
* * * * * **
16885 GTCAT-ATATGATTTTAAATTCAATTTTTTTACATTTTTGGTTAAAAAAGGCTATAATTGAATGT
64 CTCATAAT-TGATTTTAGATTGAATTTTTTTACATTTTTGGTTAGAACAGATTATAATTGAATGT
* ** * * * * **
16949 CT-GCTT-AGGAAACGTGAAGCAAAAA-CTA-ACTATTGGTACGAA
128 CTACCTTGA-GAAATATGAAG-AAAAAGGTATTC-ATTAGCAAAAA
* ** ** ********** ** *
16991 AAGTCCATTTATAGTCACTCAAGCCTTTGAANNNNNNNNNNCTTGCTTTAAATGGTTTTATAAAC
1 AAGT-CATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATC
* * * * * * *
17056 TAATAATT-ACTTTTA-AGTGAAATTGTTTTACATTTTTGGTTAAAATAGACTT-TAAGTGAATA
65 TCATAATTGA-TTTTAGATTG-AATTTTTTTACATTTTTGGTTAGAACAGA-TTATAATTGAATG
* ********** * * * *
17118 TCTACTTTGAGNNNNNNNNNNAAAAAAGCATTCATTGGTAAGAAA
127 TCTACCTTGAGAAATATGAAGAAAAAGGTATTCATTAGCAA-AAA
* * * **
17163 AA-TCCATTTATAGTCACTCATTCCTTTAAAAGCCTTAGTACTCGTTTTAGAA-GGTTTTATAAT
1 AAGT-CATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTA-AATGGTTTTATAAT
********** * * *
17226 CTCATAATTGATTNNNNNNNNNNTTTTTTAACATTTTTGGTTAAAACAGCTTATAATTGAATGTC
64 CTCATAATTGATTTTAGATTGAATTTTTTTACATTTTTGGTTAGAACAGATTATAATTGAATGTC
* ** * * ** *
17291 TATCTTGAGAAACGTGAAGAAAAAGGCAATCATTAATAAGAA
129 TACCTTGAGAAATATGAAGAAAAAGGTATTCATTAGCAAAAA
* *** * * **********
17333 AAGTCTATTTATAATCGTTCATTCCTTCAAAAGCTTTATTACTCGCNNNNNNNNNNTTTATAATC
1 AAGTC-ATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATC
* * * * *
17398 TCATAATTGATTTTAGATTAAAATTTTTTACATTTTTGATTAGAACAGAATATAGTTGAATGTCT
65 TCATAATTGATTTTAGATTGAATTTTTTTACATTTTTGGTTAGAACAGATTATAATTGAATGTCT
* *
17463 ACCCT-AGGAAATATGAAGAAAAAGGTATTCATTAGCAAGAA
130 ACCTTGA-GAAATATGAAGAAAAAGGTATTCATTAGCAAAAA
* ** ** *
17504 AAGTCCATTTATAGTCACCTATTTTTTTGAAAGTCTTATT-CGTCACTTTAAATGGTTTTATAAT
1 AAGT-CATTTATAGTCACCCATTCCTTCAAAAGCCTTATTAC-TCACTTTAAATGGTTTTATAAT
* * * * ** *
17568 GTCAAAATTGATTTTAGTTTGAATTCTTTCTACATTTTTACTTAGAACAAATTATAATTGAATGT
64 CTCATAATTGATTTTAGATTGAATT-TTTTTACATTTTTGGTTAGAACAGATTATAATTGAATGT
* ** ** *
17633 CTATCTTGAGAAACGTGAA-AAAAAGACATTCATT-GCCAATAA
128 CTACCTTGAGAAATATGAAGAAAAAGGTATTCATTAG-CAAAAA
* * * * * ** *
17675 AAGTCCATTTATAGTCACACATTCATTTAAAAGCGTTATTACTCGCTTTAAATATTTTTATAGTC
1 AAGT-CATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATC
* * * * **
17740 TCAGAATTGATTTTATATTAAATTTTTTTATATTTTTACTTAGAACAGATTATAATTGAATGTCT
65 TCATAATTGATTTTAGATTGAATTTTTTTACATTTTTGGTTAGAACAGATTATAATTGAATGTCT
** * * * * *
17805 GTCTTGAAAAACATAAAGAAAAATGTATTCATT-GGAAAGAA
130 ACCTTGAGAAATATGAAGAAAAAGGTATTCATTAGCAAA-AA
* * * * * *****
17846 AAGCCCATTTATAGTCA-CTATGCCTTCAAAAGCCTTATTACTCACATTAAATGGCTTTANNNNN
1 AAG-TCATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATC
***** * * *
17910 NNNNNATTGATTTTAGATTGAATTTTTTTACGTTTTTTGTTACAACAGATTATAATTGAATGTCT
65 TCATAATTGATTTTAGATTGAATTTTTTTACATTTTTGGTTAGAACAGATTATAATTGAATGTCT
* * * * * * *
17975 GCCCT-AGGAATCATGAAGAAAAAGATATTCATTGGTAAGAA
130 ACCTTGAGAAAT-ATGAAGAAAAAGGTATTCATTAGCAAAAA
* * *********
18016 AAGTCTATTTGTAGTCACCCGTTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTNNNNNNNNN
1 AAGTC-ATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATC
* * * * * *
18081 NCAAAATTGATTTTA-ATTTGAATTCTTTGTACATTTTCT-GTTAAAACTA-ATTATAATCGATT
65 TCATAATTGATTTTAGA-TTGAATT-TTTTTACATTTT-TGGTTAGAAC-AGATTATAATTGAAT
* ** * * * * *
18143 GTGTACCTCAAAAAATGTCAAGAAAAATGCATTCATT--CATAAGAA
126 GTCTACCTTGAGAAATATGAAGAAAAAGGTATTCATTAGCA-AA-AA
* * * * * ***
18188 AAATCCATTTATTGTCACCCATTCGTTTAAAGGCCTTATTACTTGTTTTAAATGGTTTTATAATC
1 AAGT-CATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATC
* * ********** *
18253 TCATAATTGATTTTGGGTTGANNNNNNNNNNATTTTTGGTTAGAACAGATTATAATTGAATGTTT
65 TCATAATTGATTTTAGATTGAATTTTTTTACATTTTTGGTTAGAACAGATTATAATTGAATGTCT
* * * *
18318 GCCTTGGGAAATGTGAAGAAAAAGGTATTCACTAG-AAAAA
130 ACCTTGAGAAATATGAAGAAAAAGGTATTCATTAGCAAAAA
* * * * *
18358 AAGCTCATATATAGTCACTCATTCCTTCAAAAGCTTTATTACTC-TTGTTAAATGGCTTTATAAT
1 AAG-TCATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACT-TTAAATGGTTTTATAAT
* * *
18422 CTCATAATTCATTTTAGATTGAATTTTTTTATACTTTTGGTTAGAACAGATTATAATTGAATGTC
64 CTCATAATTGATTTTAGATTGAATTTTTTTACATTTTTGGTTAGAACAGATTATAATTGAATGTC
*
18487 TA-CTCTGAGAAACATGAAGAAAAAGGTATTCATT
129 TACCT-TGAGAAATATGAAGAAAAAGGTATTCATT
18521 GGTAGGANNN
Statistics
Matches: 1259, Mismatches: 386, Indels: 112
0.72 0.22 0.06
Matches are distributed among these distances:
169 13 0.01
170 432 0.34
171 569 0.45
172 236 0.19
173 9 0.01
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.37
Consensus pattern (170 bp):
AAGTCATTTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCT
CATAATTGATTTTAGATTGAATTTTTTTACATTTTTGGTTAGAACAGATTATAATTGAATGTCTA
CCTTGAGAAATATGAAGAAAAAGGTATTCATTAGCAAAAA
Done.