Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397270.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_55.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4719911
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 90628 characters in sequence are not A, C, G, or T
File 5 of 10
Found at i:1723811 original size:35 final size:35
Alignment explanation
Indices: 1723763--1723900 Score: 123
Period size: 35 Copynumber: 3.9 Consensus size: 35
1723753 GAATAATGAG
* * *
1723763 AACAAGTAAAACAAGTGAAGCACTACTTCATGCAA
1 AACAACTAGAACAAGTGAAGCACTACTTCATGAAA
* * * **
1723798 AACAACTAGAACAAATGAAGTACTATTTCACAAAAA
1 AACAACTAGAACAAGTGAAGCACTACTTCA-TGAAA
* * * * *
1723834 AAAAACTAGAAGAAGTGAAGCATTGCTTCATGTAA
1 AACAACTAGAACAAGTGAAGCACTACTTCATGAAA
* **
1723869 AACAATTAGAGTAAGTGAAGCACTACTTCATG
1 AACAACTAGAACAAGTGAAGCACTACTTCATG
1723901 GGGAACAACT
Statistics
Matches: 78, Mismatches: 24, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
35 53 0.68
36 25 0.32
ACGTcount: A:0.48, C:0.16, G:0.15, T:0.21
Consensus pattern (35 bp):
AACAACTAGAACAAGTGAAGCACTACTTCATGAAA
Found at i:1729840 original size:17 final size:17
Alignment explanation
Indices: 1729818--1729851 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
1729808 GTTCTTGATA
1729818 AAATAA-AACCTCTTATT
1 AAATAATAA-CTCTTATT
1729835 AAATAATAACTCTTATT
1 AAATAATAACTCTTATT
1729852 TTATTATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.88
18 2 0.12
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (17 bp):
AAATAATAACTCTTATT
Found at i:1730120 original size:28 final size:28
Alignment explanation
Indices: 1730037--1730129 Score: 123
Period size: 29 Copynumber: 3.2 Consensus size: 28
1730027 TGTCTAATAG
* * *
1730037 AGACAAATATGTTTTCTTGTCTAGATTA
1 AGACAAATATATTTTCTTATCTAAATTA
* *
1730065 AGACAAAACATATTTTTTTATCTTAAATTA
1 AGAC-AAATATATTTTCTTATC-TAAATTA
1730095 AGACAAATATATTTTCTTATCTAAATTA
1 AGACAAATATATTTTCTTATCTAAATTA
1730123 AGACAAA
1 AGACAAA
1730130 CATGTTAAAG
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
28 18 0.32
29 28 0.50
30 10 0.18
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.40
Consensus pattern (28 bp):
AGACAAATATATTTTCTTATCTAAATTA
Found at i:1735021 original size:27 final size:26
Alignment explanation
Indices: 1734991--1735055 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 26
1734981 TTATTTTTAT
1734991 TTTAT-TTATATTTCAAAATATTAATAA
1 TTTATATT-TATTT-AAAATATTAATAA
*
1735018 TTTATAGTTTGTTTAAAATATTAATAA
1 TTTATA-TTTATTTAAAATATTAATAA
1735045 TTTATAATTTA
1 TTTAT-ATTTA
1735056 AAAATTAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
27 26 0.79
28 5 0.15
29 2 0.06
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.54
Consensus pattern (26 bp):
TTTATATTTATTTAAAATATTAATAA
Found at i:1735180 original size:29 final size:26
Alignment explanation
Indices: 1735129--1735212 Score: 80
Period size: 26 Copynumber: 3.1 Consensus size: 26
1735119 AAGTTTATAC
**
1735129 TTAAATATTTAATTTAAT-TTTTAAAT
1 TTAAA-ATTTAATTTTTTATTTTAAAT
*
1735155 TTAAAATATTATTTTTTTATAATTTATAAT
1 TTAAAAT-TTAATTTTTTAT--TTTA-AAT
*
1735185 TAAAAATTTAATTTTTTATTTTAAAT
1 TTAAAATTTAATTTTTTATTTTAAAT
1735211 TT
1 TT
1735213 TTTTTTGTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
25 2 0.04
26 16 0.34
27 5 0.11
29 15 0.32
30 9 0.19
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (26 bp):
TTAAAATTTAATTTTTTATTTTAAAT
Found at i:1735191 original size:30 final size:28
Alignment explanation
Indices: 1735148--1735211 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 28
1735138 TAATTTAATT
* *
1735148 TTTAAATTTAAAATATTATTTTTTTATAA
1 TTTAAATTAAAAAT-TTAATTTTTTATAA
1735177 TTTATAATTAAAAATTTAATTTTTTAT--
1 TTTA-AATTAAAAATTTAATTTTTTATAA
1735204 TTTAAATT
1 TTTAAATT
1735212 TTTTTTTGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
26 4 0.12
27 4 0.12
29 15 0.47
30 9 0.28
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (28 bp):
TTTAAATTAAAAATTTAATTTTTTATAA
Found at i:1748106 original size:11 final size:11
Alignment explanation
Indices: 1748090--1748117 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
1748080 TACATCGACA
1748090 TGCCACGTTAG
1 TGCCACGTTAG
1748101 TGCCACGTTAG
1 TGCCACGTTAG
1748112 TGCCAC
1 TGCCAC
1748118 ATGATTGAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.18, C:0.32, G:0.25, T:0.25
Consensus pattern (11 bp):
TGCCACGTTAG
Found at i:1748748 original size:31 final size:30
Alignment explanation
Indices: 1748711--1748780 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
1748701 GTATTTACTC
* *
1748711 AAATCTTTATATTTTTATTTTGAATCAAAT
1 AAATCTTTATACTTTTATTTTGAACCAAAT
*
1748741 AAGATC-TTCTACTTTTATTTTGAACCAAAT
1 AA-ATCTTTATACTTTTATTTTGAACCAAAT
*
1748771 AAATATTTAT
1 AAATCTTTAT
1748781 GATTAATGGT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
29 2 0.06
30 28 0.85
31 3 0.09
ACGTcount: A:0.37, C:0.10, G:0.04, T:0.49
Consensus pattern (30 bp):
AAATCTTTATACTTTTATTTTGAACCAAAT
Found at i:1749039 original size:29 final size:29
Alignment explanation
Indices: 1748998--1749053 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
1748988 TTTGATATAA
* * *
1748998 AATAAAAGTATAAGAACTTAATTAAATAT
1 AATAAAAGAATAAAAAATTAATTAAATAT
*
1749027 AATAAAAGAATAAAAAATTATTTAAAT
1 AATAAAAGAATAAAAAATTAATTAAAT
1749054 TTTTTCAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.30
Consensus pattern (29 bp):
AATAAAAGAATAAAAAATTAATTAAATAT
Found at i:1749298 original size:3 final size:3
Alignment explanation
Indices: 1749290--1749323 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
1749280 ATTAACAACT
1749290 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1749324 CTACAGTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:1750332 original size:23 final size:22
Alignment explanation
Indices: 1750306--1750349 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
1750296 AAATCACCAT
*
1750306 TTATCATTTTAAATAATTTTTAA
1 TTATCA-TGTAAATAATTTTTAA
* *
1750329 TTATTATGTAAATAGTTTTTA
1 TTATCATGTAAATAATTTTTA
1750350 CATTTGTATA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (22 bp):
TTATCATGTAAATAATTTTTAA
Found at i:1751452 original size:8 final size:9
Alignment explanation
Indices: 1751436--1751480 Score: 51
Period size: 8 Copynumber: 5.2 Consensus size: 9
1751426 TTTTAAATAA
1751436 ATATTTATT
1 ATATTTATT
1751445 AT-TTTATT
1 ATATTTATT
1751453 ATATTTAATT
1 ATATTT-ATT
*
1751463 AAATTT-TT
1 ATATTTATT
1751471 ATATTT-TT
1 ATATTTATT
1751479 AT
1 AT
1751481 TTTTGAATCA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
8 19 0.59
9 5 0.16
10 8 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
ATATTTATT
Found at i:1759295 original size:2 final size:2
Alignment explanation
Indices: 1759288--1759328 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
1759278 CTCTACATAC
* * *
1759288 AT AT AT AT AT AT AT AT AC AT AT AT AC AT AT AC AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1759329 CACACACACA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (2 bp):
AT
Found at i:1760223 original size:72 final size:71
Alignment explanation
Indices: 1760098--1760233 Score: 161
Period size: 72 Copynumber: 1.9 Consensus size: 71
1760088 GAGCTTCATC
* * *
1760098 TATCGATACCAAGCTTGGTAGGTATCAATATATTTGAAACAAACAGTAGAATTCCTATGTTTGGG
1 TATCGATACCAAGCTTGGTAGGTATCAATACATTTGAAACAAACAATAAAATTCCTA-GTTTGGG
1760163 CTTAAGG
65 CTTAAGG
* * *
1760170 TATCGATGCCAAG-TATGGTAGTTAT-AGATACATTTGAAACAAA-AATCAAAATTCTTAGTTTG
1 TATCGATACCAAGCT-TGGTAGGTATCA-ATACATTTGAAACAAACAAT-AAAATTCCTAGTTTG
1760232 GG
63 GG
1760234 TTGTATGTAT
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
71 11 0.20
72 44 0.80
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.32
Consensus pattern (71 bp):
TATCGATACCAAGCTTGGTAGGTATCAATACATTTGAAACAAACAATAAAATTCCTAGTTTGGGC
TTAAGG
Found at i:1761744 original size:25 final size:27
Alignment explanation
Indices: 1761700--1761750 Score: 79
Period size: 25 Copynumber: 1.9 Consensus size: 27
1761690 TCCCAAAAAT
1761700 CTTGATTAAAAAAAATATTAAAAGAAAC
1 CTTGATT-AAAAAAATATTAAAAGAAAC
1761728 CTTGATT-AAAAAA-ATTAAAAGAA
1 CTTGATTAAAAAAATATTAAAAGAA
1761751 TTTTGATTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 10 0.43
26 6 0.26
28 7 0.30
ACGTcount: A:0.61, C:0.06, G:0.08, T:0.25
Consensus pattern (27 bp):
CTTGATTAAAAAAATATTAAAAGAAAC
Found at i:1767569 original size:10 final size:10
Alignment explanation
Indices: 1767541--1767576 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
1767531 TAAGTAATCC
**
1767541 AAAAATAAAA
1 AAAAATAATT
1767551 AAAAATAATT
1 AAAAATAATT
1767561 AAAAATAATT
1 AAAAATAATT
1767571 AAAAAT
1 AAAAAT
1767577 CAACACCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (10 bp):
AAAAATAATT
Found at i:1771958 original size:21 final size:21
Alignment explanation
Indices: 1771934--1771979 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
1771924 TTAAGTGATT
1771934 AATTTAAGTTATTTTAGTTAA
1 AATTTAAGTTATTTTAGTTAA
* * *
1771955 AATTTAGGTTATTTTATTTTA
1 AATTTAAGTTATTTTAGTTAA
1771976 AATT
1 AATT
1771980 ACTTTAAGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.57
Consensus pattern (21 bp):
AATTTAAGTTATTTTAGTTAA
Found at i:1772642 original size:12 final size:13
Alignment explanation
Indices: 1772624--1772660 Score: 60
Period size: 12 Copynumber: 3.0 Consensus size: 13
1772614 CAGAGATTTT
1772624 GGAGGCAGCAAGA
1 GGAGGCAGCAAGA
1772637 -GAGGCAGCAA-A
1 GGAGGCAGCAAGA
1772648 GGAGGCAGCAAGA
1 GGAGGCAGCAAGA
1772661 AACTATTCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 1 0.05
12 20 0.91
13 1 0.05
ACGTcount: A:0.41, C:0.16, G:0.43, T:0.00
Consensus pattern (13 bp):
GGAGGCAGCAAGA
Found at i:1774883 original size:36 final size:36
Alignment explanation
Indices: 1774843--1774927 Score: 89
Period size: 36 Copynumber: 2.4 Consensus size: 36
1774833 GGCCATCATT
* * * *
1774843 CATCCATACTCACATTAAAATAGGTGGGCTATTAAC
1 CATCCACACTCACATCAAAATAAGTGGGCTACTAAC
* * * *
1774879 CATCCACATTGATATCAGAATAAGTGGGCTACTAAC
1 CATCCACACTCACATCAAAATAAGTGGGCTACTAAC
*
1774915 CATCCACATTCAC
1 CATCCACACTCAC
1774928 TTCATGGTAA
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.26
Consensus pattern (36 bp):
CATCCACACTCACATCAAAATAAGTGGGCTACTAAC
Found at i:1786860 original size:22 final size:22
Alignment explanation
Indices: 1786835--1786883 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
1786825 TTAACTTAAT
1786835 TTATTT-CATTTTAGTTTAGTGA
1 TTATTTGC-TTTTAGTTTAGTGA
*
1786857 TTATTTGCTTTTAGTTTAGTTA
1 TTATTTGCTTTTAGTTTAGTGA
1786879 TTATT
1 TTATT
1786884 AAGTTAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 24 0.96
23 1 0.04
ACGTcount: A:0.20, C:0.04, G:0.12, T:0.63
Consensus pattern (22 bp):
TTATTTGCTTTTAGTTTAGTGA
Found at i:1798617 original size:2 final size:2
Alignment explanation
Indices: 1798610--1798656 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
1798600 CCTAAATGTC
1798610 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1798652 TA TA T
1 TA TA T
1798657 CCTCAAACAC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1802375 original size:23 final size:22
Alignment explanation
Indices: 1802332--1802375 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
1802322 ATATTTGAAA
**
1802332 TATTAAAATAAATTATTATTTG
1 TATTAAAATAAATTAACATTTG
*
1802354 TATTTAAATAAATTAAACATTT
1 TATTAAAATAAATT-AACATTT
1802376 CTAAACGAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
TATTAAAATAAATTAACATTTG
Found at i:1805125 original size:17 final size:19
Alignment explanation
Indices: 1805105--1805139 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
1805095 GCAGATCTCT
1805105 AAGTGA-AAA-AAATAAAA
1 AAGTGAGAAATAAATAAAA
1805122 AAGTGAGAAATAAATAAA
1 AAGTGAGAAATAAATAAA
1805140 TAAAAAAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 3 0.19
19 7 0.44
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (19 bp):
AAGTGAGAAATAAATAAAA
Found at i:1805865 original size:13 final size:13
Alignment explanation
Indices: 1805847--1805880 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
1805837 TATTTAAATA
1805847 ATTTTAAATAATT
1 ATTTTAAATAATT
1805860 ATTTT-AATAATT
1 ATTTTAAATAATT
*
1805872 CTTTTAAAT
1 ATTTTAAAT
1805881 TTTATAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (13 bp):
ATTTTAAATAATT
Found at i:1806415 original size:22 final size:23
Alignment explanation
Indices: 1806372--1806420 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
1806362 TTAATGTATT
*
1806372 TCGTATTTGACACGTTTAATTAA
1 TCGTATTTGACACGATTAATTAA
1806395 TCGTATTTGACAC-ATTAATTAA
1 TCGTATTTGACACGATTAATTAA
1806417 TCGT
1 TCGT
1806421 GTTAATCATA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 12 0.48
23 13 0.52
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.43
Consensus pattern (23 bp):
TCGTATTTGACACGATTAATTAA
Found at i:1806668 original size:12 final size:12
Alignment explanation
Indices: 1806651--1806676 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
1806641 TTATTTTATT
1806651 TTTTTATAATTA
1 TTTTTATAATTA
1806663 TTTTTATAATTA
1 TTTTTATAATTA
1806675 TT
1 TT
1806677 GATTTTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTTTATAATTA
Found at i:1809923 original size:3 final size:3
Alignment explanation
Indices: 1809909--1809967 Score: 64
Period size: 3 Copynumber: 19.7 Consensus size: 3
1809899 GCAACAAACC
* * * * * *
1809909 CAG CAA CAG CAG CAG CAA CAA CAA CAA CAA CAG CAG CAG CAG CAG CAG
1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG
1809957 CAG CAG CAG CA
1 CAG CAG CAG CA
1809968 AAGGCAAAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.44, C:0.34, G:0.22, T:0.00
Consensus pattern (3 bp):
CAG
Found at i:1816296 original size:15 final size:15
Alignment explanation
Indices: 1816276--1816308 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
1816266 GCTTAATGTA
1816276 GTATTCCCCATATAT
1 GTATTCCCCATATAT
1816291 GTATTCCCCATATAT
1 GTATTCCCCATATAT
1816306 GTA
1 GTA
1816309 GGCGGTGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.27, C:0.24, G:0.09, T:0.39
Consensus pattern (15 bp):
GTATTCCCCATATAT
Found at i:1819690 original size:35 final size:35
Alignment explanation
Indices: 1819651--1819752 Score: 134
Period size: 35 Copynumber: 2.9 Consensus size: 35
1819641 TTGTGCTGTG
* * * *
1819651 TGAAATAGTGCTTCACTTATTTTAGTTGTTCTGCA
1 TGAAATAGTGATTCACTTGTTCTAGTTGTTCTACA
1819686 TGAAATAGT-ATTTCACTTGTTCTAGTTGTTCTACA
1 TGAAATAGTGA-TTCACTTGTTCTAGTTGTTCTACA
* *
1819721 TGAAGTAGTGATTCACTTGTTCTAGTTATTCT
1 TGAAATAGTGATTCACTTGTTCTAGTTGTTCT
1819753 CATTATTCTC
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
35 58 0.98
36 1 0.02
ACGTcount: A:0.24, C:0.14, G:0.17, T:0.46
Consensus pattern (35 bp):
TGAAATAGTGATTCACTTGTTCTAGTTGTTCTACA
Found at i:1820922 original size:15 final size:16
Alignment explanation
Indices: 1820889--1820922 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
1820879 AATTGAATCT
1820889 AAAAGCTAATGGGCAA
1 AAAAGCTAATGGGCAA
1820905 AAAAGCTAATGGGCAA
1 AAAAGCTAATGGGCAA
1820921 AA
1 AA
1820923 CTTTACTAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.53, C:0.12, G:0.24, T:0.12
Consensus pattern (16 bp):
AAAAGCTAATGGGCAA
Found at i:1823656 original size:20 final size:21
Alignment explanation
Indices: 1823631--1823672 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
1823621 TGGTTTATGG
*
1823631 AATTGAATTTG-TTAATTTAA
1 AATTGAATATGATTAATTTAA
*
1823651 AATTGAATATGATTCATTTAA
1 AATTGAATATGATTAATTTAA
1823672 A
1 A
1823673 TTAATTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.43, C:0.02, G:0.10, T:0.45
Consensus pattern (21 bp):
AATTGAATATGATTAATTTAA
Found at i:1834950 original size:10 final size:10
Alignment explanation
Indices: 1834935--1834971 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
1834925 CCATGCCTAC
1834935 ATAAATATAT
1 ATAAATATAT
1834945 ATAAATATAT
1 ATAAATATAT
*
1834955 ATATATATAT
1 ATAAATATAT
*
1834965 AAAAATA
1 ATAAATA
1834972 AATAAATGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
ATAAATATAT
Found at i:1838667 original size:30 final size:30
Alignment explanation
Indices: 1838631--1838688 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
1838621 TTATAAGTAT
1838631 TTATTTGACTCAAAATAAAAGTAAAAGAAC
1 TTATTTGACTCAAAATAAAAGTAAAAGAAC
* * *
1838661 TTATTTGACTCAAATTAAATGTATAAGA
1 TTATTTGACTCAAAATAAAAGTAAAAGA
1838689 GATTGATTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.48, C:0.09, G:0.10, T:0.33
Consensus pattern (30 bp):
TTATTTGACTCAAAATAAAAGTAAAAGAAC
Found at i:1839206 original size:29 final size:30
Alignment explanation
Indices: 1839147--1839210 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 30
1839137 TATTACATTG
* * *
1839147 AATAAGTTTTTATATTTTTATTTTGAGTCA
1 AATAAGTCTTTATATTTTTATTTTAAATCA
1839177 AATAAGTCTTTATA-TTTTATTTTAAATCA
1 AATAAGTCTTTATATTTTTATTTTAAATCA
1839206 AATAA
1 AATAA
1839211 ACTTTTTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
29 18 0.58
30 13 0.42
ACGTcount: A:0.38, C:0.05, G:0.06, T:0.52
Consensus pattern (30 bp):
AATAAGTCTTTATATTTTTATTTTAAATCA
Found at i:1859616 original size:21 final size:18
Alignment explanation
Indices: 1859584--1859627 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 18
1859574 AGAAATAACT
1859584 TAATAAATAAATATAAATAA
1 TAATAAATAAAT-TAAA-AA
1859604 TAATAATATAAATTAAAAA
1 TAATAA-ATAAATTAAAAA
1859623 -AATAA
1 TAATAA
1859628 GACAAAACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.22
19 2 0.09
20 10 0.43
21 6 0.26
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (18 bp):
TAATAAATAAATTAAAAA
Found at i:1860866 original size:14 final size:14
Alignment explanation
Indices: 1860849--1860910 Score: 52
Period size: 14 Copynumber: 4.4 Consensus size: 14
1860839 CCCCACCCAC
1860849 TTTTCCCTCCAAAG
1 TTTTCCCTCCAAAG
*** *
1860863 TTTTTAATTCAAAG
1 TTTTCCCTCCAAAG
* *
1860877 TATTCCCCCCAAAAG
1 TTTTCCCTCC-AAAG
*
1860892 ATTTCCCTCCAAAG
1 TTTTCCCTCCAAAG
1860906 TTTTC
1 TTTTC
1860911 ATTCAAAGTA
Statistics
Matches: 33, Mismatches: 14, Indels: 2
0.67 0.29 0.04
Matches are distributed among these distances:
14 22 0.67
15 11 0.33
ACGTcount: A:0.27, C:0.29, G:0.06, T:0.37
Consensus pattern (14 bp):
TTTTCCCTCCAAAG
Found at i:1860898 original size:43 final size:44
Alignment explanation
Indices: 1860850--1860951 Score: 165
Period size: 43 Copynumber: 2.4 Consensus size: 44
1860840 CCCACCCACT
*
1860850 TTTCCCTCCAAAGTTTTTAATTCAAAGTAT-TCCCCCCAAAAGA
1 TTTCCCTCCAAAGTTTTTAATTCAAAGTATCCCCCCCCAAAAGA
*
1860893 TTTCCCTCCAAAG-TTTTCATTCAAAGTATCCCCCCCCAAAAGA
1 TTTCCCTCCAAAGTTTTTAATTCAAAGTATCCCCCCCCAAAAGA
1860936 -TTCCCTCCAAAGTTTT
1 TTTCCCTCCAAAGTTTT
1860952 GGAAGGTTCT
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
42 27 0.49
43 28 0.51
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.32
Consensus pattern (44 bp):
TTTCCCTCCAAAGTTTTTAATTCAAAGTATCCCCCCCCAAAAGA
Found at i:1860915 original size:42 final size:43
Alignment explanation
Indices: 1860850--1860951 Score: 163
Period size: 42 Copynumber: 2.4 Consensus size: 43
1860840 CCCACCCACT
*
1860850 TTTCCCTCCAAAGTTTTTAATTCAAAGTAT-TCCCCCCAAAAGA
1 TTTCCCTCCAAAG-TTTTAATTCAAAGTATCCCCCCCCAAAAGA
*
1860893 TTTCCCTCCAAAGTTTTCATTCAAAGTATCCCCCCCCAAAAGA
1 TTTCCCTCCAAAGTTTTAATTCAAAGTATCCCCCCCCAAAAGA
1860936 -TTCCCTCCAAAGTTTT
1 TTTCCCTCCAAAGTTTT
1860952 GGAAGGTTCT
Statistics
Matches: 56, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
42 31 0.55
43 25 0.45
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.32
Consensus pattern (43 bp):
TTTCCCTCCAAAGTTTTAATTCAAAGTATCCCCCCCCAAAAGA
Found at i:1861128 original size:38 final size:38
Alignment explanation
Indices: 1861042--1861162 Score: 169
Period size: 38 Copynumber: 3.2 Consensus size: 38
1861032 CCTGGTGTGA
1861042 CTGGACTGGGCTGGCACCTCTT-GGCCTCCA-GTGGGT
1 CTGGACTGGGCTGGCACCTCTTGGGCCTCCAGGTGGGT
1861078 CTGGACTGGGCTGGCACCATCTTGGGCCTCCAGGTGGGT
1 CTGGACTGGGCTGGCACC-TCTTGGGCCTCCAGGTGGGT
*
1861117 CT-GAC-GTGGCTGGCACCCTCTTGGGCCTCCTGGTGGGT
1 CTGGACTG-GGCTGGCA-CCTCTTGGGCCTCCAGGTGGGT
*
1861155 TTGGACTG
1 CTGGACTG
1861163 TGGCCCGTGA
Statistics
Matches: 76, Mismatches: 2, Indels: 10
0.86 0.02 0.11
Matches are distributed among these distances:
36 18 0.24
37 5 0.07
38 39 0.51
39 13 0.17
40 1 0.01
ACGTcount: A:0.08, C:0.29, G:0.37, T:0.26
Consensus pattern (38 bp):
CTGGACTGGGCTGGCACCTCTTGGGCCTCCAGGTGGGT
Found at i:1863653 original size:40 final size:43
Alignment explanation
Indices: 1863599--1863699 Score: 163
Period size: 40 Copynumber: 2.4 Consensus size: 43
1863589 CCCACCCACT
*
1863599 TTTCCCTCCAAAGTTTTTAATTCAAAGTATT-CCCCCAAAAGA
1 TTTCCCTCCAAAGTTTTCAATTCAAAGTATTCCCCCCAAAAGA
1863641 -TTCCCT-CAAAGTTTTCAATTCAAAGTATTCCCCCCCAAAAGA
1 TTTCCCTCCAAAGTTTTCAATTCAAAGTATT-CCCCCCAAAAGA
1863683 TTTCCCTCCAAAGTTTT
1 TTTCCCTCCAAAGTTTT
1863700 GGAAGGTTCT
Statistics
Matches: 54, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
40 22 0.41
41 6 0.11
42 11 0.20
43 6 0.11
44 9 0.17
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.34
Consensus pattern (43 bp):
TTTCCCTCCAAAGTTTTCAATTCAAAGTATTCCCCCCAAAAGA
Found at i:1863841 original size:39 final size:39
Alignment explanation
Indices: 1863792--1863916 Score: 223
Period size: 39 Copynumber: 3.2 Consensus size: 39
1863782 CCTGGTGTGA
1863792 CTGGACTGGGCTGGCACCCTCTTGGGCCTCCAGGTGGGT
1 CTGGACTGGGCTGGCACCCTCTTGGGCCTCCAGGTGGGT
*
1863831 CTGGACTGGGCTGGCACCATCTTGGGCCTCCAGGTGGGT
1 CTGGACTGGGCTGGCACCCTCTTGGGCCTCCAGGTGGGT
*
1863870 CTGGACTGGGCTGGCACCCTCTTGGGCCTCCTGGTGGGT
1 CTGGACTGGGCTGGCACCCTCTTGGGCCTCCAGGTGGGT
*
1863909 TTGGACTG
1 CTGGACTG
1863917 TGGCCCGTGA
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 82 1.00
ACGTcount: A:0.08, C:0.29, G:0.38, T:0.25
Consensus pattern (39 bp):
CTGGACTGGGCTGGCACCCTCTTGGGCCTCCAGGTGGGT
Found at i:1870660 original size:85 final size:84
Alignment explanation
Indices: 1870493--1870810 Score: 383
Period size: 85 Copynumber: 3.8 Consensus size: 84
1870483 TTCAAAGACT
* ** *
1870493 TTAATATTGAGAATTATTATTTGGCTAATTAATTAAAATGATT--T-A-ATGCTAGAATTAAATA
1 TTAATATTGAGAATTATTATTTGGATTTTTAATTAAAATGATTGGTAATATGCTAGAATTAAACA
1870554 TTAAGAATTATGTTTAGGAA
66 TTAAGAATTATGTTT-GGAA
* * * *
1870574 TTAATATTTAGAATTATTATTTGAATTTGTAATTAAAATGATTGGTAATATGTTAGAATTAAACA
1 TTAATATTGAGAATTATTATTTGGATTTTTAATTAAAATGATTGGTAATATGCTAGAATTAAACA
1870639 TTAAGAATTATGTTTGTGAA
66 TTAAGAATTATGTTTG-GAA
* * * * *
1870659 TTAATGTTTAGAATTATTGTTTGGATTTTTAATTAAAATGATTGGTAATATGTTAGAATTAAATA
1 TTAATATTGAGAATTATTATTTGGATTTTTAATTAAAATGATTGGTAATATGCTAGAATTAAACA
* ** *
1870724 TTAAAAAAAATGTGTGAGAA
66 TTAAGAATTATGTTTG-GAA
* * * **
1870744 TTAATGTTGAGAATTATTTTTTCGATTTTTAATTAAAATGATTGACAATATGCTAGAATTAAACA
1 TTAATATTGAGAATTATTATTTGGATTTTTAATTAAAATGATTGGTAATATGCTAGAATTAAACA
1870809 TT
66 TT
1870811 GAAATTAATA
Statistics
Matches: 207, Mismatches: 25, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
81 37 0.18
83 1 0.00
84 2 0.01
85 167 0.81
ACGTcount: A:0.40, C:0.02, G:0.14, T:0.43
Consensus pattern (84 bp):
TTAATATTGAGAATTATTATTTGGATTTTTAATTAAAATGATTGGTAATATGCTAGAATTAAACA
TTAAGAATTATGTTTGGAA
Found at i:1879655 original size:28 final size:27
Alignment explanation
Indices: 1879610--1879668 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 27
1879600 ATTTAATAAA
*
1879610 ATTTAAATAAATCATTATTTTTTATTAT
1 ATTTAAATAAATCATTATATTTT-TTAT
* **
1879638 ATTTAATTAAATTTTTATATTTTTTAT
1 ATTTAAATAAATCATTATATTTTTTAT
1879665 -TTTA
1 ATTTA
1879669 CATCAAATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.15
27 4 0.15
28 19 0.70
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.63
Consensus pattern (27 bp):
ATTTAAATAAATCATTATATTTTTTAT
Found at i:1879676 original size:27 final size:28
Alignment explanation
Indices: 1879624--1879676 Score: 65
Period size: 27 Copynumber: 1.9 Consensus size: 28
1879614 AAATAAATCA
* *
1879624 TTATTTTTTATTATATTTAATTAAATTT
1 TTATATTTTATTATATTTAATCAAATTT
1879652 TTATATTTT-TTAT-TTTACATCAAAT
1 TTATATTTTATTATATTTA-ATCAAAT
1879677 AAGATTAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 4 0.18
27 10 0.45
28 8 0.36
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (28 bp):
TTATATTTTATTATATTTAATCAAATTT
Found at i:1879922 original size:30 final size:29
Alignment explanation
Indices: 1879871--1879960 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 29
1879861 AATTAGTTAT
* **
1879871 TAAAAATTACTTAATAAAAAATAAAAATA
1 TAAAAATTATTTAATGTAAAATAAAAATA
1879900 TAAAAACTTATTTAATGTAAAATAAAAATA
1 TAAAAA-TTATTTAATGTAAAATAAAAATA
*
1879930 TAAAAATTTAATTAAATGTAAACA-AAAAATA
1 TAAAAA-TT-ATTTAATGTAAA-ATAAAAATA
1879961 AATATTTTTT
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
29 6 0.11
30 28 0.53
31 18 0.34
32 1 0.02
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.30
Consensus pattern (29 bp):
TAAAAATTATTTAATGTAAAATAAAAATA
Found at i:1879951 original size:31 final size:30
Alignment explanation
Indices: 1879888--1879960 Score: 103
Period size: 30 Copynumber: 2.4 Consensus size: 30
1879878 TACTTAATAA
*
1879888 AAAATAAAAATATAAAAACTTATTTAATGT
1 AAAATAAAAATATAAAAACTTATTAAATGT
*
1879918 AAAATAAAAATATAAAAATTTAATTAAATGT
1 AAAATAAAAATATAAAAACTT-ATTAAATGT
1879949 AAACA-AAAAATA
1 AAA-ATAAAAATA
1879961 AATATTTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
30 20 0.51
31 18 0.46
32 1 0.03
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.29
Consensus pattern (30 bp):
AAAATAAAAATATAAAAACTTATTAAATGT
Found at i:1879961 original size:29 final size:30
Alignment explanation
Indices: 1879888--1879973 Score: 95
Period size: 30 Copynumber: 2.9 Consensus size: 30
1879878 TACTTAATAA
* * *
1879888 AAAATAAAAATATAAAAACTTATTTAATGT
1 AAAACAAAAATATAAAAATTTATTAAATGT
*
1879918 AAAATAAAAATATAAAAATTTAATTAAATGT
1 AAAACAAAAATATAAAAATTT-ATTAAATGT
* *
1879949 -AAACAAAAA-ATAAATATTTTTTAAA
1 AAAACAAAAATATAAAAATTTATTAAA
1879974 ATTTTCATAA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
28 5 0.10
29 9 0.18
30 28 0.56
31 8 0.16
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (30 bp):
AAAACAAAAATATAAAAATTTATTAAATGT
Found at i:1890633 original size:25 final size:25
Alignment explanation
Indices: 1890605--1890690 Score: 75
Period size: 25 Copynumber: 3.4 Consensus size: 25
1890595 TGTGTCGTTT
*
1890605 TACATGTTTATTAAACGTATTCATA
1 TACATATTTATTAAACGTATTCATA
* * * * * *
1890630 TACATATTAATCAAATTGT-GTCGTTT
1 TACATATTTATTAAA-CGTATTC-ATA
*
1890656 TACATGTTTATTAAACGTATTCATA
1 TACATATTTATTAAACGTATTCATA
1890681 TACATATTTA
1 TACATATTTA
1890691 ACATATCGAT
Statistics
Matches: 43, Mismatches: 15, Indels: 6
0.67 0.23 0.09
Matches are distributed among these distances:
25 26 0.60
26 17 0.40
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (25 bp):
TACATATTTATTAAACGTATTCATA
Found at i:1890640 original size:51 final size:51
Alignment explanation
Indices: 1890585--1890688 Score: 208
Period size: 51 Copynumber: 2.0 Consensus size: 51
1890575 AGTAAATGTG
1890585 TTAATCAAATTGTGTCGTTTTACATGTTTATTAAACGTATTCATATACATA
1 TTAATCAAATTGTGTCGTTTTACATGTTTATTAAACGTATTCATATACATA
1890636 TTAATCAAATTGTGTCGTTTTACATGTTTATTAAACGTATTCATATACATA
1 TTAATCAAATTGTGTCGTTTTACATGTTTATTAAACGTATTCATATACATA
1890687 TT
1 TT
1890689 TAACATATCG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.46
Consensus pattern (51 bp):
TTAATCAAATTGTGTCGTTTTACATGTTTATTAAACGTATTCATATACATA
Found at i:1892100 original size:27 final size:27
Alignment explanation
Indices: 1892070--1892392 Score: 171
Period size: 27 Copynumber: 12.1 Consensus size: 27
1892060 TTTTAATCAT
*
1892070 AGAAGCGCCCAAGGGTGTTCCTAGTAC
1 AGAAGCGCCCAAGGGTGTTCCAAGTAC
* * * *
1892097 AGAAGCACCTAGGGGCGTTCCAAGTAC
1 AGAAGCGCCCAAGGGTGTTCCAAGTAC
* *
1892124 AGAAGCTCCCAA-GGTGTTCCAAGTAT
1 AGAAGCGCCCAAGGGTGTTCCAAGTAC
* **
1892150 AGAAGCG-CCTAGGGATGTTCCAAGCGC
1 AGAAGCGCCCAAGGG-TGTTCCAAGTAC
*
1892177 AGAAGCGCAC-AGGGTGTTCCAAGTAC
1 AGAAGCGCCCAAGGGTGTTCCAAGTAC
* * * ** ** **
1892203 GGAAGCACCCAGGGGCATTTGAAGCGC
1 AGAAGCGCCCAAGGGTGTTCCAAGTAC
* *
1892230 AGAAGCG-CCAAAGGTGTTCCAAATAC
1 AGAAGCGCCCAAGGGTGTTCCAAGTAC
* * * * * **
1892256 AAAAGCGTCCAGGGGTATTTCAAGCGC
1 AGAAGCGCCCAAGGGTGTTCCAAGTAC
* *
1892283 AGAAGCGTCC-AGAGTGTTCCAAGTAC
1 AGAAGCGCCCAAGGGTGTTCCAAGTAC
* ** *
1892309 AGAAGCACTTATAGGCAT-TT-CAAGCGTA-
1 AGAAGCGCCCA-AGG-GTGTTCCAA--GTAC
* * *
1892337 A-AAGAGCCCAAGGGAGTTCCAAGCAC
1 AGAAGCGCCCAAGGGTGTTCCAAGTAC
* *
1892363 AAAAGTGCCCAA-GGTGTTCCAAGTAC
1 AGAAGCGCCCAAGGGTGTTCCAAGTAC
1892389 AGAA
1 AGAA
1892393 ACACCCAAAA
Statistics
Matches: 211, Mismatches: 71, Indels: 29
0.68 0.23 0.09
Matches are distributed among these distances:
25 5 0.02
26 90 0.43
27 106 0.50
28 6 0.03
29 4 0.02
ACGTcount: A:0.32, C:0.24, G:0.28, T:0.17
Consensus pattern (27 bp):
AGAAGCGCCCAAGGGTGTTCCAAGTAC
Found at i:1892153 original size:26 final size:26
Alignment explanation
Indices: 1892070--1892314 Score: 177
Period size: 27 Copynumber: 9.2 Consensus size: 26
1892060 TTTTAATCAT
*
1892070 AGAAGCGCCCAAGGGTGTTCCTAGTAC
1 AGAAGCGCCC-AGGGTGTTCCAAGTAC
* * *
1892097 AGAAGCACCTAGGGGCGTTCCAAGTAC
1 AGAAGCGCCCA-GGGTGTTCCAAGTAC
* * *
1892124 AGAAGCTCCCAAGGTGTTCCAAGTAT
1 AGAAGCGCCCAGGGTGTTCCAAGTAC
* **
1892150 AGAAGCGCCTAGGGATGTTCCAAGCGC
1 AGAAGCGCCCAGGG-TGTTCCAAGTAC
*
1892177 AGAAGCGCACAGGGTGTTCCAAGTAC
1 AGAAGCGCCCAGGGTGTTCCAAGTAC
* * ** **
1892203 GGAAGCACCCAGGG-GCATTTGAAGCGC
1 AGAAGCGCCCAGGGTG--TTCCAAGTAC
* * *
1892230 AGAAGCGCCAAAGGTGTTCCAAATAC
1 AGAAGCGCCCAGGGTGTTCCAAGTAC
* * * * **
1892256 AAAAGCGTCCAGGGGTATTTCAAGCGC
1 AGAAGCGCCCA-GGGTGTTCCAAGTAC
* *
1892283 AGAAGCGTCCAGAGTGTTCCAAGTAC
1 AGAAGCGCCCAGGGTGTTCCAAGTAC
1892309 AGAAGC
1 AGAAGC
1892315 ACTTATAGGC
Statistics
Matches: 162, Mismatches: 50, Indels: 13
0.72 0.22 0.06
Matches are distributed among these distances:
25 1 0.01
26 74 0.46
27 86 0.53
28 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.29, T:0.16
Consensus pattern (26 bp):
AGAAGCGCCCAGGGTGTTCCAAGTAC
Found at i:1892161 original size:53 final size:53
Alignment explanation
Indices: 1892070--1892316 Score: 246
Period size: 53 Copynumber: 4.6 Consensus size: 53
1892060 TTTTAATCAT
* **
1892070 AGAAGCGCCCAAGGGTGTTCCTAGTACAGAAGCACCTAGGGGCGTTCCAAGTAC
1 AGAAGCGCCCAA-GGTGTTCCAAGTACAGAAGCACCTAGGGGCGTTCCAAGCGC
* * * **
1892124 AGAAGCTCCCAAGGTGTTCCAAGTATAGAAGCGCCTAGGGATGTTCCAAGCGC
1 AGAAGCGCCCAAGGTGTTCCAAGTACAGAAGCACCTAGGGGCGTTCCAAGCGC
* * * * * **
1892177 AGAAGCGCACAGGGTGTTCCAAGTACGGAAGCACCCAGGGGCATTTGAAGCGC
1 AGAAGCGCCCAAGGTGTTCCAAGTACAGAAGCACCTAGGGGCGTTCCAAGCGC
* * * * ** *
1892230 AGAAGCGCCAAAGGTGTTCCAAATACAAAAGCGTCC-AGGGGTATTTCAAGCGC
1 AGAAGCGCCCAAGGTGTTCCAAGTACAGAAGC-ACCTAGGGGCGTTCCAAGCGC
*
1892283 AGAAGCGTCC-AGAGTGTTCCAAGTACAGAAGCAC
1 AGAAGCGCCCAAG-GTGTTCCAAGTACAGAAGCAC
1892317 TTATAGGCAT
Statistics
Matches: 157, Mismatches: 34, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
52 3 0.02
53 141 0.90
54 13 0.08
ACGTcount: A:0.30, C:0.24, G:0.29, T:0.16
Consensus pattern (53 bp):
AGAAGCGCCCAAGGTGTTCCAAGTACAGAAGCACCTAGGGGCGTTCCAAGCGC
Found at i:1892208 original size:106 final size:105
Alignment explanation
Indices: 1892070--1892316 Score: 289
Period size: 106 Copynumber: 2.3 Consensus size: 105
1892060 TTTTAATCAT
* * * * * *
1892070 AGAAGCGCCCAAGGGTGTTCCTAGTACAGAAGCACCTAGGGGCGTTCCAAGTACAGAAGCTCCCA
1 AGAAGCG-CC-AGGGTGTTCCAAGTACAGAAGCACCCAGGGGCATTCCAAGCACAGAAGCGCCAA
* * * *
1892135 AGGTGTTCCAAGTATAGAAGCG-CCTAGGGATGTTCCAAGCGC
64 AGGTGTTCCAAATACAAAAGCGTCC-AGGGATATTCCAAGCGC
* ** *
1892177 AGAAGCGCACAGGGTGTTCCAAGTACGGAAGCACCCAGGGGCATTTGAAGCGCAGAAGCGCCAAA
1 AGAAGCGC-CAGGGTGTTCCAAGTACAGAAGCACCCAGGGGCATTCCAAGCACAGAAGCGCCAAA
* *
1892242 GGTGTTCCAAATACAAAAGCGTCCAGGGGTATTTCAAGCGC
65 GGTGTTCCAAATACAAAAGCGTCCAGGGATATTCCAAGCGC
*
1892283 AGAAGCGTCCAGAGTGTTCCAAGTACAGAAGCAC
1 AGAAGCG-CCAGGGTGTTCCAAGTACAGAAGCAC
1892317 TTATAGGCAT
Statistics
Matches: 119, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
106 108 0.91
107 11 0.09
ACGTcount: A:0.30, C:0.24, G:0.29, T:0.16
Consensus pattern (105 bp):
AGAAGCGCCAGGGTGTTCCAAGTACAGAAGCACCCAGGGGCATTCCAAGCACAGAAGCGCCAAAG
GTGTTCCAAATACAAAAGCGTCCAGGGATATTCCAAGCGC
Found at i:1892419 original size:27 final size:28
Alignment explanation
Indices: 1892389--1892451 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
1892379 TTCCAAGTAC
* *
1892389 AGAAACACCCAAA-AGTGTT-CTAAGCGT
1 AGAAACACCCAAAGAGCGTTAC-AAGCAT
*
1892416 AGAAGCACCCAAAGAGCGTTACAAGCAT
1 AGAAACACCCAAAGAGCGTTACAAGCAT
1892444 AGAAACAC
1 AGAAACAC
1892452 TCTATGTGCA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 12 0.40
28 17 0.57
29 1 0.03
ACGTcount: A:0.44, C:0.24, G:0.19, T:0.13
Consensus pattern (28 bp):
AGAAACACCCAAAGAGCGTTACAAGCAT
Found at i:1909324 original size:16 final size:15
Alignment explanation
Indices: 1909292--1909331 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
1909282 AAAGGGGAAA
*
1909292 AGAAAAGAAGAAAAG
1 AGAAAAAAAGAAAAG
*
1909307 AGAAAGAAAAGAAGAG
1 AGAAA-AAAAGAAAAG
1909323 AGAAAAAAA
1 AGAAAAAAA
1909332 ACTTATTGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (15 bp):
AGAAAAAAAGAAAAG
Found at i:1914343 original size:2 final size:2
Alignment explanation
Indices: 1914336--1914369 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
1914326 AAATGTTTGC
* *
1914336 AT AT AT AT AT AT AT AT AT AT AT AT TT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1914370 TTTATAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1931637 original size:27 final size:27
Alignment explanation
Indices: 1931624--1931685 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
1931614 TTTTTTTTAT
*
1931624 AAAAGTAATGCAATATATTATTTTGATG
1 AAAA-TAATACAATATATTATTTTGATG
* *
1931652 AAAATAATACAATTTGTTATTTTGATG
1 AAAATAATACAATATATTATTTTGATG
1931679 AAAATAA
1 AAAATAA
1931686 ATGTTAACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
27 27 0.87
28 4 0.13
ACGTcount: A:0.47, C:0.03, G:0.11, T:0.39
Consensus pattern (27 bp):
AAAATAATACAATATATTATTTTGATG
Found at i:1933960 original size:43 final size:43
Alignment explanation
Indices: 1933899--1933986 Score: 158
Period size: 43 Copynumber: 2.0 Consensus size: 43
1933889 GATGTATCAG
* *
1933899 TTGTGTATGAGCGTTGTTTTGCTTCTTTTAATGTTATTAGGTT
1 TTGTGTATGAGCGTTGTTTTGCATCTTTTAATGTTAGTAGGTT
1933942 TTGTGTATGAGCGTTGTTTTGCATCTTTTAATGTTAGTAGGTT
1 TTGTGTATGAGCGTTGTTTTGCATCTTTTAATGTTAGTAGGTT
1933985 TT
1 TT
1933987 TACTTTTGGT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.15, C:0.07, G:0.24, T:0.55
Consensus pattern (43 bp):
TTGTGTATGAGCGTTGTTTTGCATCTTTTAATGTTAGTAGGTT
Found at i:1934620 original size:96 final size:98
Alignment explanation
Indices: 1934454--1934647 Score: 320
Period size: 96 Copynumber: 2.0 Consensus size: 98
1934444 CCCTAACCTT
* *
1934454 ACCATATTTGTTAGCTTTTATTTTGTTTTTTATTTTATGGATGGAAGTGTTGCTTCTAGATTTGT
1 ACCATATTTGTTAGCTTTTATTTTGTATTTTATTTTATGGATGGAAGTGTTGCCTCTAGATTTGT
* *
1934519 GAGCGTGATGTTTTAAATTTATGTTTTATGTTC
66 GAGCGTGATGTTTTAAAATTATGATTTATGTTC
**
1934552 ACCATATTTGTTAGCTTTTA-TTT-TATTTTATTTTATGGATTTAAGTGTTGCCTCTAGATTTGT
1 ACCATATTTGTTAGCTTTTATTTTGTATTTTATTTTATGGATGGAAGTGTTGCCTCTAGATTTGT
1934615 GAGCGTGATGTTTTAAAATTATGATTTATGTTC
66 GAGCGTGATGTTTTAAAATTATGATTTATGTTC
1934648 TAGCTGAACA
Statistics
Matches: 90, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
96 67 0.74
97 3 0.03
98 20 0.22
ACGTcount: A:0.21, C:0.08, G:0.18, T:0.53
Consensus pattern (98 bp):
ACCATATTTGTTAGCTTTTATTTTGTATTTTATTTTATGGATGGAAGTGTTGCCTCTAGATTTGT
GAGCGTGATGTTTTAAAATTATGATTTATGTTC
Found at i:1934641 original size:48 final size:48
Alignment explanation
Indices: 1934498--1934642 Score: 120
Period size: 49 Copynumber: 3.0 Consensus size: 48
1934488 TTATGGATGG
*
1934498 AAGTGTTGCTTCTAGATTTGTGAGCGTGATGTTTTAAATTTATG-TTT
1 AAGTGTTGCCTCTAGATTTGTGAGCGTGATGTTTTAAATTTATGATTT
* * * * * * * *
1934545 TA-TGTT-CAC-C-ATATTTGTTAGCTTTTATTTTATTTTATTTTATGGATTT
1 AAGTGTTGC-CTCTAGATTTGTGAGC-GTGA-TGT-TTTAAATTTAT-GATTT
*
1934594 AAGTGTTGCCTCTAGATTTGTGAGCGTGATGTTTTAAAATTATGATTT
1 AAGTGTTGCCTCTAGATTTGTGAGCGTGATGTTTTAAATTTATGATTT
1934642 A
1 A
1934643 TGTTCTAGCT
Statistics
Matches: 70, Mismatches: 18, Indels: 19
0.65 0.17 0.18
Matches are distributed among these distances:
44 10 0.14
45 4 0.06
46 6 0.09
47 10 0.14
48 7 0.10
49 12 0.17
50 7 0.10
51 4 0.06
52 10 0.14
ACGTcount: A:0.23, C:0.08, G:0.19, T:0.51
Consensus pattern (48 bp):
AAGTGTTGCCTCTAGATTTGTGAGCGTGATGTTTTAAATTTATGATTT
Found at i:1941198 original size:17 final size:17
Alignment explanation
Indices: 1941176--1941222 Score: 76
Period size: 17 Copynumber: 2.8 Consensus size: 17
1941166 CTTCATTCAT
1941176 ATTCAAAGCAAAGCAAA
1 ATTCAAAGCAAAGCAAA
* *
1941193 ATTCAAGGCAAAACAAA
1 ATTCAAAGCAAAGCAAA
1941210 ATTCAAAGCAAAG
1 ATTCAAAGCAAAG
1941223 TTGGTTTTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.57, C:0.17, G:0.13, T:0.13
Consensus pattern (17 bp):
ATTCAAAGCAAAGCAAA
Found at i:1943794 original size:18 final size:18
Alignment explanation
Indices: 1943771--1943809 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
1943761 CTATTAAAGA
1943771 TGAGGTTGTTCCTAACAT
1 TGAGGTTGTTCCTAACAT
*
1943789 TGAGGTTGTTTCTAACAT
1 TGAGGTTGTTCCTAACAT
1943807 TGA
1 TGA
1943810 TGCTATTCCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.13, G:0.23, T:0.41
Consensus pattern (18 bp):
TGAGGTTGTTCCTAACAT
Found at i:1947906 original size:42 final size:42
Alignment explanation
Indices: 1947708--1947915 Score: 206
Period size: 42 Copynumber: 4.9 Consensus size: 42
1947698 CGAGAGAAAA
* * * *
1947708 AAAAATGCATTTCAAGTAGTATTCTCAATAAGTCCAAG-AGAAG
1 AAAAA-GCATTGCAAGTAGTATTCTAAAT-ACTTCAAGAAGAAG
*
1947751 AAAAAGCATTGCAAGTATTATTCTAAATACTTACAAG-AGAAG
1 AAAAAGCATTGCAAGTAGTATTCTAAATACTT-CAAGAAGAAG
* * * * *
1947793 AAAAAACATTTCAAGTATTATGCTAAATACCTCTAAG-AGAAG
1 AAAAAGCATTGCAAGTAGTATTCTAAATACTTC-AAGAAGAAG
* * *
1947835 AAAAAGGATTGCGAGTAGTATTCTAAATACTTCTAGAAGAAG
1 AAAAAGCATTGCAAGTAGTATTCTAAATACTTCAAGAAGAAG
* * *
1947877 AAAAAGCATTACAAGTAGTATTTTGAATACCTTCAAGAA
1 AAAAAGCATTGCAAGTAGTATTCTAAATA-CTTCAAGAA
1947916 ATAAGGAAGC
Statistics
Matches: 138, Mismatches: 23, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
41 5 0.04
42 120 0.87
43 13 0.09
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.26
Consensus pattern (42 bp):
AAAAAGCATTGCAAGTAGTATTCTAAATACTTCAAGAAGAAG
Found at i:1947906 original size:84 final size:84
Alignment explanation
Indices: 1947708--1947914 Score: 254
Period size: 84 Copynumber: 2.5 Consensus size: 84
1947698 CGAGAGAAAA
* ** *
1947708 AAAAATGCATTTCAAGTAGTATTCTCAATAAGTCCAAGAGAAGAAAAAGCATTGCAAGTATTATT
1 AAAAA-GCATTTCAAGTAGTATTCTAAATACCTCCAAGAGAAGAAAAAGCATTGCAAGTAGTATT
1947773 CTAAATACTTACAAGAGAAG
65 CTAAATACTTACAAGAGAAG
* * * * * *
1947793 AAAAAACATTTCAAGTATTATGCTAAATACCTCTAAGAGAAGAAAAAGGATTGCGAGTAGTATTC
1 AAAAAGCATTTCAAGTAGTATTCTAAATACCTCCAAGAGAAGAAAAAGCATTGCAAGTAGTATTC
*
1947858 TAAATACTT-CTAGAAGAAG
66 TAAATACTTACAAG-AGAAG
* * * *
1947877 AAAAAGCATTACAAGTAGTATTTTGAATACCTTCAAGA
1 AAAAAGCATTTCAAGTAGTATTCTAAATACCTCCAAGA
1947915 AATAAGGAAG
Statistics
Matches: 102, Mismatches: 19, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
83 3 0.03
84 94 0.92
85 5 0.05
ACGTcount: A:0.45, C:0.13, G:0.15, T:0.27
Consensus pattern (84 bp):
AAAAAGCATTTCAAGTAGTATTCTAAATACCTCCAAGAGAAGAAAAAGCATTGCAAGTAGTATTC
TAAATACTTACAAGAGAAG
Found at i:1947941 original size:84 final size:84
Alignment explanation
Indices: 1947700--1947948 Score: 207
Period size: 84 Copynumber: 2.9 Consensus size: 84
1947690 TATACCTCCG
* * * * ** * * *
1947700 AGAGAAAAAAAAATGCATTTCAAGTAGTATTCTCAATAAGTCCAAGAGAAGAAAAAGCATTGCAA
1 AGAGAAGAAAAAA--CATTACAAGTAGTATGCTAAATACCTCTAAGAGAAGAAAAAGCATGGCGA
* *
1947765 GTATTATTCTAAATACTTACA
64 GCAATATTCTAAATACTTACA
* * * * *
1947786 AGAGAAGAAAAAACATTTCAAGTATTATGCTAAATACCTCTAAGAGAAGAAAAAGGATTGCGAGT
1 AGAGAAGAAAAAACATTACAAGTAGTATGCTAAATACCTCTAAGAGAAGAAAAAGCATGGCGAGC
* *
1947851 AGTATTCTAAATACTT-CT
66 AATATTCTAAATACTTACA
* ** * * *
1947869 AGAAGAAGAAAAAGCATTACAAGTAGTATTTTGAATACCT-TCAAGA-AATAAGGAAGCATGGCG
1 AG-AGAAGAAAAAACATTACAAGTAGTATGCTAAATACCTCT-AAGAGAAGAA-AAAGCATGGCG
*
1947932 AGCAATATTCTGAATAC
63 AGCAATATTCTAAATAC
1947949 CTCAAGAAAA
Statistics
Matches: 136, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
83 8 0.06
84 116 0.85
86 12 0.09
ACGTcount: A:0.46, C:0.12, G:0.17, T:0.25
Consensus pattern (84 bp):
AGAGAAGAAAAAACATTACAAGTAGTATGCTAAATACCTCTAAGAGAAGAAAAAGCATGGCGAGC
AATATTCTAAATACTTACA
Found at i:1961237 original size:67 final size:67
Alignment explanation
Indices: 1961124--1961257 Score: 250
Period size: 67 Copynumber: 2.0 Consensus size: 67
1961114 GGAAAAGTAT
*
1961124 GCTTCAATTTTGACAAATCATATTAGAGATAAGATATAAAGATGGTCTAAATTAACAGCAAAAAT
1 GCTTAAATTTTGACAAATCATATTAGAGATAAGATATAAAGATGGTCTAAATTAACAGCAAAAAT
1961189 AA
66 AA
*
1961191 GCTTAAATTTTGACAAATCATGTTAGAGATAAGATATAAAGATGGTCTAAATTAACAGCAAAAAT
1 GCTTAAATTTTGACAAATCATATTAGAGATAAGATATAAAGATGGTCTAAATTAACAGCAAAAAT
1961256 AA
66 AA
1961258 CATTGATGTT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 65 1.00
ACGTcount: A:0.48, C:0.10, G:0.14, T:0.28
Consensus pattern (67 bp):
GCTTAAATTTTGACAAATCATATTAGAGATAAGATATAAAGATGGTCTAAATTAACAGCAAAAAT
AA
Found at i:1969814 original size:23 final size:23
Alignment explanation
Indices: 1969778--1969821 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
1969768 AGAGCCCATT
*
1969778 TTTGTATAAATGTGTATATGATA
1 TTTGTATAAATGTGTACATGATA
**
1969801 TTTGTATATGTGTGTACATGA
1 TTTGTATAAATGTGTACATGA
1969822 ACATGTGGCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.30, C:0.02, G:0.20, T:0.48
Consensus pattern (23 bp):
TTTGTATAAATGTGTACATGATA
Found at i:1971676 original size:5 final size:5
Alignment explanation
Indices: 1971666--1971690 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
1971656 AGACACAAAT
1971666 ATCAA ATCAA ATCAA ATCAA ATCAA
1 ATCAA ATCAA ATCAA ATCAA ATCAA
1971691 CCGAAGCAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (5 bp):
ATCAA
Found at i:1980408 original size:13 final size:13
Alignment explanation
Indices: 1980390--1980415 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1980380 TTAAATAAAT
1980390 TTATATTTTTTTA
1 TTATATTTTTTTA
1980403 TTATATTTTTTTA
1 TTATATTTTTTTA
1980416 ATCAAATAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TTATATTTTTTTA
Found at i:1986600 original size:29 final size:29
Alignment explanation
Indices: 1986525--1986605 Score: 117
Period size: 29 Copynumber: 2.8 Consensus size: 29
1986515 TTTTTCTTAT
* ** **
1986525 TCTCTTATACTTGTTCACATACAACTTTT
1 TCTCTTGTACTTGTTCATGTACAACTTCC
1986554 TCTCTTGTACTTGTTCATGTACAACTTCC
1 TCTCTTGTACTTGTTCATGTACAACTTCC
1986583 TCTCTTGTACTTGTTCATGTACA
1 TCTCTTGTACTTGTTCATGTACA
1986606 GTTTATCTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.20, C:0.25, G:0.09, T:0.47
Consensus pattern (29 bp):
TCTCTTGTACTTGTTCATGTACAACTTCC
Found at i:1989526 original size:102 final size:102
Alignment explanation
Indices: 1989370--1989727 Score: 587
Period size: 102 Copynumber: 3.5 Consensus size: 102
1989360 TGCTTATATC
* * * * *
1989370 TTGGCTGCAATTATATTATATTATTGGTCGTAAGCTATATTGCTCAATCTTTGACCATAATTTAT
1 TTGGCTGTAATGATATTATATTATTAGTCGCAAGCTATATCGCTCAATCTTTGACCATAATTTAT
*
1989435 CATTAACATTTCAGCCACTAGCTTTATCTCTCATGAT
66 CATTAACGTTTCAGCCACTAGCTTTATCTCTCATGAT
*
1989472 TTGGCTGTAATGATATTATATTATTAGTTGCAAGCTATATCGCTCAATCTTTGACCATAATTTAT
1 TTGGCTGTAATGATATTATATTATTAGTCGCAAGCTATATCGCTCAATCTTTGACCATAATTTAT
1989537 CATTAACGTTTCAGCCACTAGCTTTATCTCTCATGAT
66 CATTAACGTTTCAGCCACTAGCTTTATCTCTCATGAT
*
1989574 TTGGCTGTAATGATATTATATTATTAGTTGCAAGCTATATCGCTCAATCTTTGACCATAATTTAT
1 TTGGCTGTAATGATATTATATTATTAGTCGCAAGCTATATCGCTCAATCTTTGACCATAATTTAT
*
1989639 CATTAACGTTTCAGCCACTAGCTTTATCACTCATGAT
66 CATTAACGTTTCAGCCACTAGCTTTATCTCTCATGAT
*
1989676 TTGGCTGTAATGATATTATGTTATT-GATCGCAAGCT-TCATCGCTC-ATCTTTG
1 TTGGCTGTAATGATATTATATTATTAG-TCGCAAGCTAT-ATCGCTCAATCTTTG
1989728 GCCTTAGGTT
Statistics
Matches: 244, Mismatches: 10, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
101 9 0.04
102 235 0.96
ACGTcount: A:0.27, C:0.18, G:0.13, T:0.41
Consensus pattern (102 bp):
TTGGCTGTAATGATATTATATTATTAGTCGCAAGCTATATCGCTCAATCTTTGACCATAATTTAT
CATTAACGTTTCAGCCACTAGCTTTATCTCTCATGAT
Found at i:1990561 original size:35 final size:36
Alignment explanation
Indices: 1990515--1990584 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
1990505 GGGAGGAGGA
*
1990515 AGCATGAGGATTAA-TAGAGTAGCTCTAGCACCATT
1 AGCATAAGGATTAATTAGAGTAGCTCTAGCACCATT
*
1990550 AGCATAAGGATTAATTAGAGTAGCTTTAGCACCAT
1 AGCATAAGGATTAATTAGAGTAGCTCTAGCACCAT
1990585 CAGTATCAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 13 0.41
36 19 0.59
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (36 bp):
AGCATAAGGATTAATTAGAGTAGCTCTAGCACCATT
Found at i:1991044 original size:13 final size:13
Alignment explanation
Indices: 1991028--1991054 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1991018 AAATTTATTT
1991028 ATAAAAAAATAAA
1 ATAAAAAAATAAA
1991041 ATAAAAAAATAAA
1 ATAAAAAAATAAA
1991054 A
1 A
1991055 AAATGTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
ATAAAAAAATAAA
Found at i:1993039 original size:13 final size:13
Alignment explanation
Indices: 1993023--1993047 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1993013 ATAATAAAAC
1993023 ATAACAAAATGAA
1 ATAACAAAATGAA
1993036 ATAACAAAATGA
1 ATAACAAAATGA
1993048 CATATTATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.08, G:0.08, T:0.16
Consensus pattern (13 bp):
ATAACAAAATGAA
Found at i:1993110 original size:15 final size:14
Alignment explanation
Indices: 1993077--1993139 Score: 56
Period size: 15 Copynumber: 4.3 Consensus size: 14
1993067 AAAATCAATG
*
1993077 AATAAAACTAAAAA
1 AATAAAAATAAAAA
*
1993091 AATAATAATAAAACA
1 AATAAAAATAAAA-A
1993106 AATAAAAATAATAATA
1 AATAAAAATAA-AA-A
*
1993122 AA-ACAAATAAAAA
1 AATAAAAATAAAAA
1993135 TAATA
1 -AATA
1993140 TATACATAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
13 1 0.03
14 15 0.38
15 19 0.47
16 5 0.12
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.19
Consensus pattern (14 bp):
AATAAAAATAAAAA
Found at i:1993114 original size:21 final size:21
Alignment explanation
Indices: 1993067--1993139 Score: 112
Period size: 21 Copynumber: 3.4 Consensus size: 21
1993057 AATATATAAT
*
1993067 AAAATCAATGAATAAAACTAA-A
1 AAAAT-AAT-AATAAAACAAATA
1993089 AAAATAATAATAAAACAAATA
1 AAAATAATAATAAAACAAATA
1993110 AAAATAATAATAAAACAAATA
1 AAAATAATAATAAAACAAATA
1993131 AAAATAATA
1 AAAATAATA
1993140 TATACATAAT
Statistics
Matches: 49, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
20 10 0.20
21 34 0.69
22 5 0.10
ACGTcount: A:0.74, C:0.05, G:0.01, T:0.19
Consensus pattern (21 bp):
AAAATAATAATAAAACAAATA
Found at i:1993938 original size:67 final size:63
Alignment explanation
Indices: 1993839--1993971 Score: 203
Period size: 64 Copynumber: 2.0 Consensus size: 63
1993829 TTATTATTTG
*
1993839 TATCTTGAAAATCTTATTTATATGAAAAATTATTATTATGTAATCAATCAAATACTACAAAAAAA
1 TATCTTGAAAATCTTATTTATATG-AAAA--ATTATTACGTAATCAATCAAATACTACAAAAAAA
1993904 TA
63 -A
* *
1993906 TATCTTGAAAATCTTATTTATATGGAAAATTATTACGTAATCAATCAAATATTACAAAAAAAA
1 TATCTTGAAAATCTTATTTATATGAAAAATTATTACGTAATCAATCAAATACTACAAAAAAAA
1993969 TAT
1 TAT
1993972 TGACATTACA
Statistics
Matches: 63, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
63 4 0.06
64 32 0.51
66 3 0.05
67 24 0.38
ACGTcount: A:0.49, C:0.09, G:0.05, T:0.37
Consensus pattern (63 bp):
TATCTTGAAAATCTTATTTATATGAAAAATTATTACGTAATCAATCAAATACTACAAAAAAAA
Found at i:2001711 original size:18 final size:17
Alignment explanation
Indices: 2001687--2001734 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
2001677 AAAAGCCTAT
*
2001687 AAAATAAAATAAACAGA
1 AAAATAAAATAAAAAGA
*
2001704 ATAAAT-AAATAAAAATA
1 A-AAATAAAATAAAAAGA
2001721 AAAATAAAGATAAA
1 AAAATAAA-ATAAA
2001735 GATAGAATAG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 4 0.15
17 13 0.50
18 9 0.35
ACGTcount: A:0.77, C:0.02, G:0.04, T:0.17
Consensus pattern (17 bp):
AAAATAAAATAAAAAGA
Found at i:2014821 original size:36 final size:36
Alignment explanation
Indices: 2014776--2014847 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
2014766 ATGTTCATGT
*
2014776 TTTTTTGTTATGTATTGACTTAAAGATAGCGATCTC
1 TTTTTTGTTAAGTATTGACTTAAAGATAGCGATCTC
* *
2014812 TTTTTTGTTAAGTATTGACTTAAAGATGGTGATCTC
1 TTTTTTGTTAAGTATTGACTTAAAGATAGCGATCTC
2014848 ATATCTCCCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.25, C:0.10, G:0.18, T:0.47
Consensus pattern (36 bp):
TTTTTTGTTAAGTATTGACTTAAAGATAGCGATCTC
Found at i:2015897 original size:27 final size:27
Alignment explanation
Indices: 2015846--2015899 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
2015836 AGGAGCAAAC
* **
2015846 ATAAGATATTAAAAGTTATGTGGATAA
1 ATAAGATATTAAAAATTATACGGATAA
2015873 ATAAGATATTAAAAATTATACGGATAA
1 ATAAGATATTAAAAATTATACGGATAA
2015900 TTATGAACAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.52, C:0.02, G:0.15, T:0.31
Consensus pattern (27 bp):
ATAAGATATTAAAAATTATACGGATAA
Found at i:2016089 original size:17 final size:19
Alignment explanation
Indices: 2016059--2016096 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
2016049 ATTTATAATA
2016059 AAAAATTATAAATA-TTAT
1 AAAAATTATAAATATTTAT
*
2016077 AAAAA-TATTAATATTTAT
1 AAAAATTATAAATATTTAT
2016095 AA
1 AA
2016097 TATCATTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAAATTATAAATATTTAT
Found at i:2017513 original size:33 final size:33
Alignment explanation
Indices: 2017433--2017513 Score: 90
Period size: 33 Copynumber: 2.5 Consensus size: 33
2017423 TATGCTGCGC
*
2017433 GATGCTAATGTGATATATTAACATAATATAATT
1 GATGCTGATGTGATATATTAACATAATATAATT
* ** * * *
2017466 GGTAATGATGTGATATATTGATATATTATAATT
1 GATGCTGATGTGATATATTAACATAATATAATT
*
2017499 GATGCTGATATGATA
1 GATGCTGATGTGATA
2017514 AGCTAATTTA
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.38, C:0.04, G:0.17, T:0.41
Consensus pattern (33 bp):
GATGCTGATGTGATATATTAACATAATATAATT
Found at i:2027668 original size:22 final size:21
Alignment explanation
Indices: 2027637--2027682 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
2027627 CCAAACAATT
* *
2027637 AAATTTAAAATTATTAAAATA
1 AAATTTAAAACTAATAAAATA
*
2027658 AAATATTAAAACTAATAAACTA
1 AAAT-TTAAAACTAATAAAATA
2027680 AAA
1 AAA
2027683 CTAAAATTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.30
Consensus pattern (21 bp):
AAATTTAAAACTAATAAAATA
Found at i:2036917 original size:2 final size:2
Alignment explanation
Indices: 2036910--2036956 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
2036900 TGTTTTCTGA
2036910 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2036952 AT AT A
1 AT AT A
2036957 AAACACTGGC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:2041689 original size:2 final size:2
Alignment explanation
Indices: 2041684--2041711 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
2041674 TATATATATA
2041684 TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG
2041712 ATTATGATCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:2048321 original size:40 final size:40
Alignment explanation
Indices: 2048271--2048348 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
2048261 TATTTTATAT
* *
2048271 AATTCAAAATTAATGTGATATGTTAAAATGTTGTAATGAA
1 AATTCAAAATTAATGTGATATGTGAAAATGTTATAATGAA
* * *
2048311 AATTTAAAATTGATGTGATATGTGGAAATGTTATAATG
1 AATTCAAAATTAATGTGATATGTGAAAATGTTATAATG
2048349 GATTCTGACG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.42, C:0.01, G:0.18, T:0.38
Consensus pattern (40 bp):
AATTCAAAATTAATGTGATATGTGAAAATGTTATAATGAA
Found at i:2056157 original size:6 final size:6
Alignment explanation
Indices: 2056148--2056173 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
2056138 CTAAGAGAGC
2056148 AAAGGG AAAGGG AAAGGG AAAGGG AA
1 AAAGGG AAAGGG AAAGGG AAAGGG AA
2056174 GAAATTGACG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (6 bp):
AAAGGG
Found at i:2057924 original size:24 final size:21
Alignment explanation
Indices: 2057877--2057918 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
2057867 GACTTGTAAT
*
2057877 AATTTTTTTAATAATATTATA
1 AATTTTTTTAATAAAATTATA
* *
2057898 AATTTTTTTAGTAAAAATATA
1 AATTTTTTTAATAAAATTATA
2057919 TAAAATCAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (21 bp):
AATTTTTTTAATAAAATTATA
Found at i:2058115 original size:2 final size:2
Alignment explanation
Indices: 2058108--2058135 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
2058098 ATAATAAAAT
2058108 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2058136 ATCTTTGGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2058385 original size:84 final size:84
Alignment explanation
Indices: 2058297--2058527 Score: 268
Period size: 84 Copynumber: 2.8 Consensus size: 84
2058287 ATTAATTTAA
* *
2058297 TTAATGAGTAAAGTCAGTCAGTTTGGTTAAAATGTGTATGAAAATC-GTTTAAATCAATTTATAG
1 TTAATGAGTAAAGTCAGTCAGTTTGGTTAAAATGTGTATGAAAATCAG-TTAAATAAATTAATAG
2058361 TAATTAATTAGTTAATTCGG
65 TAATTAATTAGTTAATTCGG
* * * *
2058381 TTAATGAGTAAAGT-TGATCAATTTAGTTCAAATGTGTATGAAAATCAGTTAAATAAATTAATAG
1 TTAATGAGTAAAGTCAG-TCAGTTTGGTTAAAATGTGTATGAAAATCAGTTAAATAAATTAATAG
* *
2058445 TAATTAATTAGTTAATTTGT
65 TAATTAATTAGTTAATTCGG
* * * * * * * * * *
2058465 TTAGTGAGTAAAATCGGTTAGTTAGGTTAAATTGTGTATGAAAAACAATTAAATTAGTTAATA
1 TTAATGAGTAAAGTCAGTCAGTTTGGTTAAAATGTGTATGAAAATCAGTTAAATAAATTAATA
2058528 ATATTTTTGA
Statistics
Matches: 123, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
83 1 0.01
84 120 0.98
85 2 0.02
ACGTcount: A:0.40, C:0.04, G:0.17, T:0.39
Consensus pattern (84 bp):
TTAATGAGTAAAGTCAGTCAGTTTGGTTAAAATGTGTATGAAAATCAGTTAAATAAATTAATAGT
AATTAATTAGTTAATTCGG
Found at i:2061023 original size:11 final size:11
Alignment explanation
Indices: 2061009--2061060 Score: 52
Period size: 11 Copynumber: 4.5 Consensus size: 11
2060999 ATTTTTTTAA
*
2061009 TTATTTTATTT
1 TTATTTTATGT
2061020 TTATTAAGTTAT-T
1 TTATT---TTATGT
2061033 TTATTTTATGT
1 TTATTTTATGT
*
2061044 TAATTTTATGT
1 TTATTTTATGT
2061055 TTATTT
1 TTATTT
2061061 GCCTTAGTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
10 4 0.11
11 21 0.60
13 6 0.17
14 4 0.11
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (11 bp):
TTATTTTATGT
Found at i:2061033 original size:19 final size:17
Alignment explanation
Indices: 2060997--2061039 Score: 68
Period size: 19 Copynumber: 2.4 Consensus size: 17
2060987 TAAGATTTAG
2060997 TTATTTTTTTAATTATT
1 TTATTTTTTTAATTATT
2061014 TTATTTTTATTAAGTTATT
1 TTATTTTT-TTAA-TTATT
2061033 TTATTTT
1 TTATTTT
2061040 ATGTTAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 8 0.33
18 4 0.17
19 12 0.50
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (17 bp):
TTATTTTTTTAATTATT
Found at i:2061040 original size:18 final size:17
Alignment explanation
Indices: 2060997--2061041 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 17
2060987 TAAGATTTAG
*
2060997 TTATTTTTTTAATTATT
1 TTATTTTATTAATTATT
2061014 TTATTTTTATTAAGTTATT
1 TTA-TTTTATTAA-TTATT
2061033 TTATTTTAT
1 TTATTTTAT
2061042 GTTAATTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 3 0.12
18 14 0.56
19 8 0.32
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (17 bp):
TTATTTTATTAATTATT
Found at i:2061050 original size:29 final size:30
Alignment explanation
Indices: 2060995--2061052 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
2060985 GTTAAGATTT
* * *
2060995 AGTTATTTTTTTAATTATTTTATTTTTATTA
1 AGTTATTTTATT-ATTATGTTAATTTTATTA
2061026 AGTTATTTTATT-TTATGTTAATTTTAT
1 AGTTATTTTATTATTATGTTAATTTTAT
2061053 GTTTATTTGC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 13 0.54
31 11 0.46
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (30 bp):
AGTTATTTTATTATTATGTTAATTTTATTA
Found at i:2062705 original size:14 final size:14
Alignment explanation
Indices: 2062686--2062715 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
2062676 ATAAATATGA
2062686 CCCAATACCCTCAG
1 CCCAATACCCTCAG
2062700 CCCAATACCCTCAG
1 CCCAATACCCTCAG
2062714 CC
1 CC
2062716 AATTTTTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.53, G:0.07, T:0.13
Consensus pattern (14 bp):
CCCAATACCCTCAG
Found at i:2067757 original size:170 final size:170
Alignment explanation
Indices: 2067475--2067782 Score: 422
Period size: 170 Copynumber: 1.8 Consensus size: 170
2067465 TCACAACCCC
* * * **
2067475 TTTAGGAAATGGGATGTGACAGCTCTCCTCTTTTGTCTTTGATCTAGACTTTATGATCCTTGATC
1 TTTAGGAAATGAGATGTGACAACTCTCCTCTTCTGTCTTTGATCTAGACTTTATGATCCTCAATC
* * * * *
2067540 CTCCAAATGCCTTATTGGAACGTACTATTACTTATCAGATAAAGGGACATCTATGTCAAACTAAT
66 CTCAAAATGCCTTATTGGAACGTACTATTACCTATCAGATAAAGGGACATCTAAGTAAAACCAAT
*
2067605 ATGGCTTTATGGTAGGGTCCATGCACCTGTCATGAACCTT
131 AAGGCTTTATGGTAGGGTCCATGCACCTGTCATGAACCTT
* *
2067645 TTTAGGAAATGAGATGTGACAACTCTTCTCTTCTGTCTTTGAT-TGAGAAC-TTATGATTCTCAA
1 TTTAGGAAATGAGATGTGACAACTCTCCTCTTCTGTCTTTGATCT-AG-ACTTTATGATCCTCAA
* * * * *
2067708 TCCTCAAAATGCCTTATTGGAATGTATTGTTGCCTGTCAGATAAAGGGACATCTAAGTAAAACCA
64 TCCTCAAAATGCCTTATTGGAACGTACTATTACCTATCAGATAAAGGGACATCTAAGTAAAACCA
2067773 ATAAGGCTTT
129 ATAAGGCTTT
2067783 TCTAGGGTGG
Statistics
Matches: 118, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
169 1 0.01
170 115 0.97
171 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (170 bp):
TTTAGGAAATGAGATGTGACAACTCTCCTCTTCTGTCTTTGATCTAGACTTTATGATCCTCAATC
CTCAAAATGCCTTATTGGAACGTACTATTACCTATCAGATAAAGGGACATCTAAGTAAAACCAAT
AAGGCTTTATGGTAGGGTCCATGCACCTGTCATGAACCTT
Found at i:2069123 original size:30 final size:30
Alignment explanation
Indices: 2069089--2069186 Score: 133
Period size: 30 Copynumber: 3.3 Consensus size: 30
2069079 AAGCATACGA
*
2069089 CTAAGTTGTTACATGCCATGCCTAAAATTC
1 CTAAGATGTTACATGCCATGCCTAAAATTC
*
2069119 CTAAGATGTTTCATGCCATGCCTAAAATTC
1 CTAAGATGTTACATGCCATGCCTAAAATTC
* * * *
2069149 CTAAGATGTTGCACGCCATACCTAAATTTC
1 CTAAGATGTTACATGCCATGCCTAAAATTC
*
2069179 CCAAGATG
1 CTAAGATG
2069187 CTATATGTCA
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 61 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (30 bp):
CTAAGATGTTACATGCCATGCCTAAAATTC
Found at i:2069737 original size:26 final size:26
Alignment explanation
Indices: 2069706--2069763 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
2069696 TAGAAATGAA
*
2069706 TCAAATGATGCCCTACTCAAATGACC
1 TCAAATGATACCCTACTCAAATGACC
* * *
2069732 TCAAATGATACTCTGCTCAAATGATC
1 TCAAATGATACCCTACTCAAATGACC
2069758 TCAAAT
1 TCAAAT
2069764 TGTTTTTCTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.28
Consensus pattern (26 bp):
TCAAATGATACCCTACTCAAATGACC
Found at i:2069875 original size:38 final size:38
Alignment explanation
Indices: 2069790--2069878 Score: 99
Period size: 38 Copynumber: 2.3 Consensus size: 38
2069780 TGGCCTGTGC
* * * * * *
2069790 ACTTGAATACGAGGAGTTTATTTTCAAATTGCTCCTGT
1 ACTTCAATATGAGGAGTTTATTTTCAAATGGCACATCT
*
2069828 ACTTGAATATGAGGAGTTTATTTTCAAATGGCACATACT
1 ACTTCAATATGAGGAGTTTATTTTCAAATGGCACAT-CT
2069867 -CTTCAATATGAG
1 ACTTCAATATGAG
2069879 CAGGTTTTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
38 43 0.98
39 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (38 bp):
ACTTCAATATGAGGAGTTTATTTTCAAATGGCACATCT
Found at i:2072596 original size:22 final size:23
Alignment explanation
Indices: 2072571--2072614 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
2072561 TGATGGATTT
*
2072571 TATATCCA-TTTCCAATGAATTG
1 TATACCCATTTTCCAATGAATTG
*
2072593 TATACCCATTTTCTAATGAATT
1 TATACCCATTTTCCAATGAATT
2072615 TTGCACCCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.32, C:0.18, G:0.07, T:0.43
Consensus pattern (23 bp):
TATACCCATTTTCCAATGAATTG
Found at i:2072610 original size:23 final size:23
Alignment explanation
Indices: 2072554--2072614 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
2072544 AATGGTAGAT
* * * *
2072554 CCATTTT-TGATGGATTTTATAT
1 CCATTTTCTAATGAATTGTATAC
*
2072576 CCA-TTTCCAATGAATTGTATAC
1 CCATTTTCTAATGAATTGTATAC
2072598 CCATTTTCTAATGAATT
1 CCATTTTCTAATGAATT
2072615 TTGCACCCAA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
21 3 0.10
22 16 0.52
23 12 0.39
ACGTcount: A:0.28, C:0.16, G:0.10, T:0.46
Consensus pattern (23 bp):
CCATTTTCTAATGAATTGTATAC
Found at i:2073597 original size:16 final size:16
Alignment explanation
Indices: 2073557--2073599 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
2073547 ACAAATTTTT
2073557 TTAAAATATATTTATA
1 TTAAAATATATTTATA
*
2073573 TTATTAATA-ATTTATAA
1 TTA-AAATATATTTAT-A
2073590 TTAAAATATA
1 TTAAAATATA
2073600 AATAATTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TTAAAATATATTTATA
Found at i:2073989 original size:3 final size:3
Alignment explanation
Indices: 2073981--2074005 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
2073971 AAAGAATTGA
2073981 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
2074006 TGAAAATAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:2096324 original size:13 final size:13
Alignment explanation
Indices: 2096306--2096333 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
2096296 CTTTCCTTAG
2096306 ACATCATCAAATC
1 ACATCATCAAATC
2096319 ACATCATCAAATC
1 ACATCATCAAATC
2096332 AC
1 AC
2096334 GCACAATGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.21
Consensus pattern (13 bp):
ACATCATCAAATC
Found at i:2112431 original size:25 final size:25
Alignment explanation
Indices: 2112383--2112433 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
2112373 TAATGCTTTA
*
2112383 TAAAAAAAATCTAAAATAAAATTTT
1 TAAAAAAAATCTAAAAGAAAATTTT
* * *
2112408 TAAAAAAATTCTTAAAGAAGATTTT
1 TAAAAAAAATCTAAAAGAAAATTTT
2112433 T
1 T
2112434 CTTCTCTTCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (25 bp):
TAAAAAAAATCTAAAAGAAAATTTT
Found at i:2117214 original size:205 final size:202
Alignment explanation
Indices: 2116830--2117228 Score: 554
Period size: 205 Copynumber: 2.0 Consensus size: 202
2116820 TGTTAATTGA
* * * *
2116830 ACATCATTGATTTCAAAAAAATTTCCTTCTTCCCCACTAGGTACAGAAAACAAAGGGTAGTCTAT
1 ACATCATTGATTTCAAAAAAATTTCCTTCTGCCCCACTAGATAAAGAAAACAAAGGGTAGTCGAT
*
2116895 ATGTCCAAAGGTTTTATTAATATATATACTGAAAGGAAAGAAGACTATTGCTCTAAGTAATGGCT
66 ATGTCCAAAGGTTTTATTAATATATATACTGAAAGGAAAGAAGAC-ATTGCTCAAAGTAATGGCT
2116960 TAACAGACCTGCATAATTAATGGAACCTTTATACTTACCCAAATTTACAGTTTATTTTCCTTTTC
130 TAACAGACCTGCATAATTAATGGAACCTTTATACTTACCCAAATTTACAGTTTATTTTCCTTTTC
2117025 TGCATTCT
195 TGCATTCT
* * *
2117033 ACATCATTGATTTCAAAAGAGTTTGCTTCTGCCTCCTACTAGATAAAGAAAACAAAGGGTAGTCG
1 ACATCATTGATTTCAAAAAAATTTCCTTCTGCC-CC-ACTAGATAAAGAAAACAAAGGGTAGTC-
* * * *
2117098 GATATGTTCTAAGGTTTTATTAATATATATACTGAAAGGAAAGAATAC-TTGTTCAAAGTAATGG
63 GATATGTCCAAAGGTTTTATTAATATATATACTGAAAGGAAAGAAGACATTGCTCAAAGTAATGG
* * * *
2117162 CTT-ACTGGACCTTGCATAATTAATGG-ACCTTGTATA-TTGACCCAACTTTACAGTTTGTTTTT
128 CTTAAC-AGACC-TGCATAATTAATGGAACCTT-TATACTT-ACCCAAATTTACAGTTTATTTTC
2117224 CTTTT
189 CTTTT
2117229 TTTGTCTTAT
Statistics
Matches: 173, Mismatches: 16, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
203 31 0.18
204 30 0.17
205 68 0.39
206 44 0.25
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (202 bp):
ACATCATTGATTTCAAAAAAATTTCCTTCTGCCCCACTAGATAAAGAAAACAAAGGGTAGTCGAT
ATGTCCAAAGGTTTTATTAATATATATACTGAAAGGAAAGAAGACATTGCTCAAAGTAATGGCTT
AACAGACCTGCATAATTAATGGAACCTTTATACTTACCCAAATTTACAGTTTATTTTCCTTTTCT
GCATTCT
Found at i:2119297 original size:26 final size:25
Alignment explanation
Indices: 2119267--2119321 Score: 101
Period size: 26 Copynumber: 2.2 Consensus size: 25
2119257 TTCGTAGGCA
2119267 TTGCTTGTTTTGATTCTCACTTGTGG
1 TTGCTTGTTTTGATTCTCACTTGT-G
2119293 TTGCTTGTTTTGATTCTCACTTGTG
1 TTGCTTGTTTTGATTCTCACTTGTG
2119318 TTGC
1 TTGC
2119322 ACCATGGCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 5 0.17
26 24 0.83
ACGTcount: A:0.07, C:0.16, G:0.22, T:0.55
Consensus pattern (25 bp):
TTGCTTGTTTTGATTCTCACTTGTG
Found at i:2121094 original size:31 final size:30
Alignment explanation
Indices: 2121007--2121098 Score: 80
Period size: 30 Copynumber: 3.0 Consensus size: 30
2120997 GACTTGCAAT
* * *
2121007 AAAATATTTTTAATATCCATAATAGCTAAC
1 AAAATATATTCAATATTCATAATAGCTAAC
* * *
2121037 ACAAGATATACAATA-TC-TACAGTAGCTAAGC
1 AAAATATATTCAATATTCATA-A-TAGCTAA-C
*
2121068 AAAATATATTGAATATTCATAATAGCTAAC
1 AAAATATATTCAATATTCATAATAGCTAAC
2121098 A
1 A
2121099 CATAATATTC
Statistics
Matches: 47, Mismatches: 10, Indels: 10
0.70 0.15 0.15
Matches are distributed among these distances:
28 2 0.04
29 2 0.04
30 19 0.40
31 19 0.40
32 3 0.06
33 2 0.04
ACGTcount: A:0.48, C:0.14, G:0.08, T:0.30
Consensus pattern (30 bp):
AAAATATATTCAATATTCATAATAGCTAAC
Found at i:2124428 original size:14 final size:14
Alignment explanation
Indices: 2124406--2124438 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
2124396 AATTTGAATG
*
2124406 CATGCTATTTCATT
1 CATGGTATTTCATT
2124420 CATGGTATTTCATT
1 CATGGTATTTCATT
2124434 CATGG
1 CATGG
2124439 CTTAATCTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.21, C:0.18, G:0.15, T:0.45
Consensus pattern (14 bp):
CATGGTATTTCATT
Found at i:2127169 original size:21 final size:22
Alignment explanation
Indices: 2127144--2127185 Score: 68
Period size: 21 Copynumber: 1.9 Consensus size: 22
2127134 TTTGAATGAT
2127144 GGCATCATTCTT-TGCCATGTA
1 GGCATCATTCTTGTGCCATGTA
2127165 GGCATCATTCTTGGTGCCATG
1 GGCATCATTCTT-GTGCCATG
2127186 AATTGCATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 12 0.63
23 7 0.37
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.36
Consensus pattern (22 bp):
GGCATCATTCTTGTGCCATGTA
Found at i:2135628 original size:2 final size:2
Alignment explanation
Indices: 2135621--2135649 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
2135611 TAGCTATCTG
2135621 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2135650 GTTTTGTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2152937 original size:23 final size:25
Alignment explanation
Indices: 2152891--2152953 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 25
2152881 TCTAAAATAT
*
2152891 TATTTATACTAAT-AAAATATTTT-A
1 TATTT-TAATAATAAAAATATTTTAA
2152915 -ATTTTAAT-ATAAAAATATATTTAA
1 TATTTTAATAATAAAAATAT-TTTAA
2152939 TATTTTAATAATAAA
1 TATTTTAATAATAAA
2152954 TTTAATTTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
21 2 0.06
22 10 0.30
23 7 0.21
24 1 0.03
25 8 0.24
26 5 0.15
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (25 bp):
TATTTTAATAATAAAAATATTTTAA
Found at i:2152963 original size:25 final size:25
Alignment explanation
Indices: 2152904--2152953 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
2152894 TTATACTAAT
2152904 AAAATAT-TTT-A-ATTTTAATATA
1 AAAATATATTTAATATTTTAATATA
2152926 AAAATATATTTAATATTTTAATAATA
1 AAAATATATTTAATATTTTAAT-ATA
2152952 AA
1 AA
2152954 TTTAATTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 7 0.29
23 3 0.12
24 1 0.04
25 8 0.33
26 5 0.21
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (25 bp):
AAAATATATTTAATATTTTAATATA
Found at i:2155486 original size:34 final size:34
Alignment explanation
Indices: 2155438--2155510 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 34
2155428 ATGTTACATA
* *
2155438 TCAAAACTTTAGCACCAGATCCTACACGCCAAGG
1 TCAAAACTTCAGCACCAAATCCTACACGCCAAGG
* * **
2155472 TCAAAGCTTCAGCACTAAATGTTACACGCCAAGG
1 TCAAAACTTCAGCACCAAATCCTACACGCCAAGG
*
2155506 CCAAA
1 TCAAA
2155511 CTTTATGCAT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.37, C:0.30, G:0.15, T:0.18
Consensus pattern (34 bp):
TCAAAACTTCAGCACCAAATCCTACACGCCAAGG
Found at i:2159160 original size:26 final size:27
Alignment explanation
Indices: 2159126--2159216 Score: 85
Period size: 28 Copynumber: 3.3 Consensus size: 27
2159116 CGCTAAGTGT
* *
2159126 TTCTCAAGTGCGTAATGCATAAG-GACG
1 TTCT-AAGTACGTAATGCACAAGTGACG
* *
2159153 TTCTAAGTACGTAACGCCCAAGTGACG
1 TTCTAAGTACGTAATGCACAAGTGACG
* * *
2159180 TTCCTAAGTACGTAATGCCCAAATGATG
1 TT-CTAAGTACGTAATGCACAAGTGACG
2159208 TTACTAAGT
1 TT-CTAAGT
2159217 GCATAACGCT
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 14 0.26
27 10 0.19
28 30 0.56
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (27 bp):
TTCTAAGTACGTAATGCACAAGTGACG
Found at i:2159189 original size:28 final size:27
Alignment explanation
Indices: 2159149--2159225 Score: 91
Period size: 28 Copynumber: 2.8 Consensus size: 27
2159139 AATGCATAAG
*
2159149 GACGTTCTAAGTACGTAACGCCCAAGT
1 GACGTTCTAAGTACGTAACGCCCAAAT
*
2159176 GACGTTCCTAAGTACGTAATGCCCAAAT
1 GACGTT-CTAAGTACGTAACGCCCAAAT
* * *
2159204 GATGTTACTAAGTGCATAACGC
1 GACGTT-CTAAGTACGTAACGC
2159226 TCAGTGTCAT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 6 0.14
28 36 0.86
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (27 bp):
GACGTTCTAAGTACGTAACGCCCAAAT
Found at i:2161715 original size:36 final size:36
Alignment explanation
Indices: 2161665--2161761 Score: 104
Period size: 36 Copynumber: 2.7 Consensus size: 36
2161655 GATTTCATCA
* *
2161665 TTTGCTGTGACAATGGGGTGTGATAAGACTCTGTTG
1 TTTGCTGTGACAATGGGGCGTGACAAGACTCTGTTG
* * * * *
2161701 TTTGCTTTGGCAATGGGGCGTGACATGATTGTGTTG
1 TTTGCTGTGACAATGGGGCGTGACAAGACTCTGTTG
***
2161737 TTTGCTACAACAATGGGGCGTGACA
1 TTTGCTGTGACAATGGGGCGTGACA
2161762 TGATATTGTA
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 50 1.00
ACGTcount: A:0.20, C:0.13, G:0.33, T:0.34
Consensus pattern (36 bp):
TTTGCTGTGACAATGGGGCGTGACAAGACTCTGTTG
Found at i:2164098 original size:21 final size:21
Alignment explanation
Indices: 2164074--2164114 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
2164064 TTAAAGTAAT
*
2164074 TTAAAGGAAAATAACATAAAA
1 TTAAACGAAAATAACATAAAA
* *
2164095 TTAAACTAAAATAACTTAAA
1 TTAAACGAAAATAACATAAA
2164115 TAAACTAATC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.63, C:0.07, G:0.05, T:0.24
Consensus pattern (21 bp):
TTAAACGAAAATAACATAAAA
Found at i:2167101 original size:43 final size:42
Alignment explanation
Indices: 2167040--2167134 Score: 104
Period size: 43 Copynumber: 2.2 Consensus size: 42
2167030 AAATTGCATC
*
2167040 ACCCCACATCTGACATTGCATTATG-TGACTTAGGCATTACATG
1 ACCCCACATCAGACATTGCA-TA-GATGACTTAGGCATTACATG
* *
2167083 ACCCCACATCCAG-CATTGCATAGCATGACTTAGGCATTGCGTG
1 ACCCCACAT-CAGACATTGCATAG-ATGACTTAGGCATTACATG
*
2167126 ACCCTACAT
1 ACCCCACAT
2167135 TTGTCATAGT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
41 1 0.02
42 2 0.04
43 40 0.89
44 2 0.04
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.26
Consensus pattern (42 bp):
ACCCCACATCAGACATTGCATAGATGACTTAGGCATTACATG
Found at i:2167236 original size:22 final size:22
Alignment explanation
Indices: 2167211--2167279 Score: 102
Period size: 22 Copynumber: 3.1 Consensus size: 22
2167201 ACACATTGTG
*
2167211 TGACTAGTTTTTAGGCATTATA
1 TGACTAGTTTTTAGGCATTACA
*
2167233 TGACTAGTTTTTAGGCATTCCA
1 TGACTAGTTTTTAGGCATTACA
* *
2167255 TAACTAGTTTTTAGGCATTGCA
1 TGACTAGTTTTTAGGCATTACA
2167277 TGA
1 TGA
2167280 TTGGTTCTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (22 bp):
TGACTAGTTTTTAGGCATTACA
Done.