Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397423.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_480.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20834
ACGTcount: A:0.32, C:0.11, G:0.12, T:0.29
Warning! 3536 characters in sequence are not A, C, G, or T
Found at i:4948 original size:170 final size:171
Alignment explanation
Indices: 4646--5085 Score: 519
Period size: 170 Copynumber: 2.6 Consensus size: 171
4636 AAGAAAATTG
* * * * * *
4646 AATCAATTATGAGATTATAAAACTTTTTAAAGTGACTAATATGGCTTTTGAAGGCATAGGCGACT
1 AATCAATTATGAGATTATAAAACTATTTAAAGAGACTGATAAGGCTTTCGAAGACATAGGCGACT
** * * * * * * * *
4711 ATAGATGGACTTTTCTTATCAATAAATAACTTTTTCTTCATGTTTGTTGATGTGGACATTCAAAT
66 ATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCATCACGTTTCTCGATATAGACATTCAAAT
* * *
4776 ATTATCT-TTTTAACCAAAAATGTAAAAATATTCT-AGTTAA
131 ATTATCTGTTCTAACCAAAAATATAAAAAAATT-TAAGTTAA
* * *
4816 AATCAATTATGAGATTATAAAACTATTTAAAGCGACTGATAAGGCTTTCGAAGACATGGGTGACT
1 AATCAATTATGAGATTATAAAACTATTTAAAGAGACTGATAAGGCTTTCGAAGACATAGGCGACT
4881 ATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCATCACGTTTCTCGATATAGACA-TCTAAA
66 ATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCATCACGTTTCTCGATATAGACATTC-AAA
** *
4945 TATTATCTGTTCTAGTCAAAAATATAAAAAAATTTAAGTTAT
130 TATTATCTGTTCTAACCAAAAATATAAAAAAATTTAAGTTAA
* * * **
4987 AATCAATTATGAGATTATAAAACTATTTAAATAGAGC-GATAAGGCTTTCAAAGACTTAAACGAC
1 AATCAATTATGAGATTATAAAACTATTTAAAGAGA-CTGATAAGGCTTTCGAAGACATAGGCGAC
* ** *
5051 TATAAATAAACTTTTCTTGCCAATGCATGACTTTT
65 TATAGATGGACTTTTCTTGCCAATGAATGACTTTT
5086 GCCTCCCCTT
Statistics
Matches: 230, Mismatches: 36, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
169 2 0.01
170 117 0.51
171 110 0.48
172 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (171 bp):
AATCAATTATGAGATTATAAAACTATTTAAAGAGACTGATAAGGCTTTCGAAGACATAGGCGACT
ATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCATCACGTTTCTCGATATAGACATTCAAAT
ATTATCTGTTCTAACCAAAAATATAAAAAAATTTAAGTTAA
Found at i:5110 original size:171 final size:170
Alignment explanation
Indices: 4646--5110 Score: 416
Period size: 171 Copynumber: 2.7 Consensus size: 170
4636 AAGAAAATTG
* * * * ** * **
4646 AATCAATTATGAGATTATAAAACTTTTTAAAGTGACTAATATGGCTTTTGAAGGCATAGGCGACT
1 AATCAATTATGAGATTATAAAACTATTTAAAGAGACTGATAAGGCTTTCAAAGACATAAACGACT
* ** ** * * * * ** * * * *
4711 ATAGATGGACTTTTCTTATCAATAAATAACTTTTTCTTCATGTTTGTTGATG-TGGACAT-TCAA
66 ATAAATAAACTTTTCTTGCCAATGAATGACTTTTGCATCACCTTT-CTCAAGATAGACATCT-AA
* * *
4774 ATATTATCTTTTTAACCAAAAATGTAAAAATATTCTAGTTAA
129 ATATTATCTTTCTAACCAAAAATATAAAAAAATTCTAGTTAA
* * ****
4816 AATCAATTATGAGATTATAAAACTATTTAAAGCGACTGATAAGGCTTTCGAAGACATGGGTGACT
1 AATCAATTATGAGATTATAAAACTATTTAAAGAGACTGATAAGGCTTTCAAAGACATAAACGACT
* ** * * * *
4881 ATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCATCACGTTTCTCGATATAGACATCTAAAT
66 ATAAATAAACTTTTCTTGCCAATGAATGACTTTTGCATCACCTTTCTCAAGATAGACATCTAAAT
** *
4946 ATTATCTGTTCTAGTCAAAAATATAAAAAAATT-TAAGTTAT
131 ATTATCT-TTCTAACCAAAAATATAAAAAAATTCT-AGTTAA
* *
4987 AATCAATTATGAGATTATAAAACTATTTAAATAGAGC-GATAAGGCTTTCAAAGACTTAAACGAC
1 AATCAATTATGAGATTATAAAACTATTTAAAGAGA-CTGATAAGGCTTTCAAAGACATAAACGAC
* * * *
5051 TATAAATAAACTTTTCTTGCCAATGCATGACTTTTGCCTCCCCTTTCTCAAGGTAGACAT
65 TATAAATAAACTTTTCTTGCCAATGAATGACTTTTGCATCACCTTTCTCAAGATAGACAT
5111 TCAATTATAA
Statistics
Matches: 245, Mismatches: 45, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
169 1 0.00
170 114 0.47
171 129 0.53
172 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (170 bp):
AATCAATTATGAGATTATAAAACTATTTAAAGAGACTGATAAGGCTTTCAAAGACATAAACGACT
ATAAATAAACTTTTCTTGCCAATGAATGACTTTTGCATCACCTTTCTCAAGATAGACATCTAAAT
ATTATCTTTCTAACCAAAAATATAAAAAAATTCTAGTTAA
Found at i:7254 original size:171 final size:171
Alignment explanation
Indices: 6826--8917 Score: 1825
Period size: 171 Copynumber: 12.3 Consensus size: 171
6816 NNNNNNNNNN
* * * *
6826 ACTTAAAATCAATTATGATATTATAAAACCATTTAAAGTGAGTAATAAAGCTTTCGAACGCATGA
1 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAACGCATGG
* * **
6891 GTGACTATAGATGAACTTTTCTTGCCAATGAATGTCTTTTTC-TTCATG-TTTCTTTGTGTAGAC
66 GTGACTATAGATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTTCATGTTTTC-AAG-GTAGAC
* * * *
6954 AATCAAATAATATCTGTTTTAACCAGAAATAT-AAAAAATTCA
129 ATTCAAATATTATCTGTTTTAACAAAAAATATAAAAAAATTCA
* * * * * * * ** * *
6996 TCTTAAAATCAATTAAGAGATTATAAAACCGTTCATAA-TGAGTAATCAGCCTTTTAAACACATT
1 ACTTAAAATCAATTATGAGATTATAAAACCATTTA-AAGCGAGTAATAAGGCTTTCGAACGCATG
* * * *
7060 GGTAACTATGGATGGACTTTTCTTGACAATGAATGGCTTTTTCTTCTCAT-TTTTCAAGGTAGGC
65 GGTGACTATAGATGGACTTTTCTTGCCAATGAATGGCTTTTTCTT-TCATGTTTTCAAGGTAGAC
* *
7124 ATTCTAATATTATCTGTTTTAACAAAAAATATAAACAAATTCA
129 ATTCAAATATTATCTGTTTTAACAAAAAATATAAAAAAATTCA
* * * *
7167 ACTTAAAATCAATTATGAGATTATAAAAGCATTTAAAGCGTGTAATAAGCCTTTCAAACGCATGG
1 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAACGCATGG
* * * *
7232 GTGACTATAGATAGACTTTTCTTGCCAATGAATGGCTTTTTC-TTCATGTTTCCCTATGTAGACA
66 GTGACTATAGATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTTCATGTTT-TCAAGGTAGACA
* * *
7296 TTCAAATATTATCTGTTTTAACCAAAAACATAAAATAATTCA
130 TTCAAATATTATCTGTTTTAACAAAAAATATAAAAAAATTCA
* *** *
7338 ACTTAAAATTAATTATGAGATTATAAAACCATTTAAAATAAGTAATAAGGCTTAT-GAA-GACTT
1 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT-TCGAACG-CAT
** * * * * ** * ** * * * * *
7401 AAGCGACTATAAATGGACTTTTTTTGCCAATGGATAACTTTTAC-CACACGTTCTCTGAGGCAAA
64 GGGTGACTATAGATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTTCATGTTTTC-AAGGTAGA
* * * * * * * *
7465 CATTCAATTATAATATATTTTTACTAAAGATGTAAAAAAATTCA
128 CATTCAAATATTATCTGTTTTAACAAAAAATATAAAAAAATTCA
* * * * * * *
7509 ATTTAAAATCAATTATGAGATTATAAAACTAGTTAAAGTGAGTAATAAGGCTTTTGAAGGCATAG
1 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAACGCATGG
* * *
7574 GTGACTTTAGATAGACTTTTCTTGCCAATGAATGGC-TTTTC-TTCATGTTTCTCAATGTAGACA
66 GTGACTATAGATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTTCATGTTT-TCAAGGTAGACA
* * * *
7637 TTCAAATGTTATCTATTTTAACCAAAAATGTAAAAAAATTCA
130 TTCAAATATTATCTGTTTTAACAAAAAATATAAAAAAATTCA
* * * * * * * *
7679 TCTTAAAATTAATTATGAGATTATAAAATCATTTAAAGTGAGTGATAAGGCTTTTGAA-GACTTA
1 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAACG-CATG
* * * ** * * * * * *
7743 AGCGACTATAAATGGACTTTTCTTATCAATGGATGACTGTTGCTTT-ATGTCTCTT-GAGGCAGA
65 GGTGACTATAGATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTTCATGT-T-TTCAAGGTAGA
* * * * * *
7806 CATTCAATTATAATATATTTTAATAAAAAATATAAAAACATTCA
128 CATTCAAATATTATCTGTTTTAACAAAAAATATAAAAAAATTCA
* * * ** **
7850 ACTTACAATCAATTATGAGATCATAAAACCATTTAAAGCCAGTAATAACTCTTTCGAGTGCATGG
1 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAACGCATGG
* * * *
7915 ATGACTATATATGGACTTTTCTTGCCAATGAAT-GCCTTTTCTTCTTAT-TTCTT-AAGGTAGAC
66 GTGACTATAGATGGACTTTTCTTGCCAATGAATGGCTTTTTCTT-TCATGTT-TTCAAGGTAGAC
*
7977 ATTCAAATATTATCTGTTTTAACAAAAACTATAAAAAAATTCA
129 ATTCAAATATTATCTGTTTTAACAAAAAATATAAAAAAATTCA
* * * * * *
8020 ACTTAAAATCAATTATGAGATCACAAAAAGCTTTTAAAGCGAGAAATAAGGCTTTTCAAACGCAT
1 ACTTAAAATCAATTATGAGATTA-TAAAACCATTTAAAGCGAGTAATAAGGC-TTTCGAACGCAT
* * * * * *
8085 GAGTGACTATAG-TGGACTTTTCTTACCAATAAATGTCTTTTTCTTT-ATGTTTCCCAATGTAGA
64 GGGTGACTATAGATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTTCATGTTT-TCAAGGTAGA
* * *
8148 CATTCAAATACTATCTGTTTTAACCAAAAATGTAAAAAAAATTCA
128 CATTCAAATATTATCTGTTTTAACAAAAAATAT-AAAAAAATTCA
** * * * * *
8193 ACTTAAAATCAATTATGAGATTATAAAATTATTTAAAACGGGTAATAAGGGTTTCGAATGTATGG
1 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAACGCATGG
* ** * * * * *
8258 GTGACTATATATGGACTTTTCTTTTCAATAAAGGGCTTTTT-TTCCCCT-TTTT-TAGGTAGACA
66 GTGACTATAGATGGACTTTTCTTGCCAATGAATGGCTTTTTCTT-TCATGTTTTCAAGGTAGACA
* * *
8320 TTCAAATATTATCTTTTTTAATAAAAAAATATAAAAAAAATCA
130 TTCAAATATTATCTGTTTTAA-CAAAAAATATAAAAAAATTCA
* * * *
8363 ACTTAAAATCAATTATAAGATTATAAAACTATTTAAAACGAGTAATAAGGCTTTCGAATGCATGG
1 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAACGCATGG
* * * * *
8428 GTGGCTATAGATGCACTTTT-TTGCCAATGAATGGCTTTTTC-TCCATGTTTTCCTATGTAGACA
66 GTGACTATAGATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTTCATGTTTT-CAAGGTAGACA
* * * ** *
8491 TTTAAATATTATCTGTTTAAACCAAAAACGTAAAACAATTCA
130 TTCAAATATTATCTGTTTTAACAAAAAATATAAAAAAATTCA
* * * * * * *
8533 AC-CAAACATCAATTATGAGATTATAAAACCATTCAAAGTGAGTAATATGACTTACGAA-GACTT
1 ACTTAAA-ATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAACG-CAT
** * * * * * ** ** ** *
8596 AAGCGACTATAAATGAAGTTTTCTTGCCAATGGATAACTTTGGCTTTACAT-TTCCCAAGGCAGA
64 GGGTGACTATAGATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTT-CATGTTTTCAAGGTAGA
* * * * * * * *
8660 CATTTAATTATAATATATTCTAATAAAAAA-AGTAAAAAAATTTA
128 CATTCAAATATTATCTGTTTTAACAAAAAATA-TAAAAAAATTCA
* * *
8704 ACTTAAAATTAATTATGAGATTATAAAACCATTTAAAGCGAGTATTAAGGCTTTCGAAGGCATGG
1 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAACGCATGG
* * * * * *
8769 GTGACTGTAAATGGACTTTTCTTGCTAATGAATGGCTTTTT-TTTCATGTTTCCTAATGTAGATA
66 GTGACTATAGATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTTCATGTTTTC-AAGGTAGACA
* * * *
8833 TTCAACTATTATCTGTTTTGATC-AAAAATGTTAAAAAATTCA
130 TTCAAATATTATCTGTTTT-AACAAAAAATATAAAAAAATTCA
8875 A-TATAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
1 ACT-TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
8918 GACAATATTT
Statistics
Matches: 1535, Mismatches: 337, Indels: 99
0.78 0.17 0.05
Matches are distributed among these distances:
168 3 0.00
169 33 0.02
170 536 0.35
171 789 0.51
172 136 0.09
173 38 0.02
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (171 bp):
ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAACGCATGG
GTGACTATAGATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTTCATGTTTTCAAGGTAGACAT
TCAAATATTATCTGTTTTAACAAAAAATATAAAAAAATTCA
Found at i:7739 original size:341 final size:339
Alignment explanation
Indices: 6826--9636 Score: 1734
Period size: 341 Copynumber: 8.3 Consensus size: 339
6816 NNNNNNNNNN
* * *
6826 ACTTAAAATCAATTATGATATTATAAAACCATTTAAAGTGAGTAATAAAGCTTTCGAACGCATGA
1 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAACGCATG-
* *
6891 GTGACTATAGAT-GAACTTTTCTTGCCAATGAATGTCTTTTTCTTCATGTTTCTTTGTGTAGACA
65 GTGACTATAGATAG-ACTTTTCTTGCCAATGAATGGC-TTTTCTTCATGTTTCTTTATGTAGACA
* * * * *
6955 ATCAAATAATATCTGTTTTAACCAGAAATAT-AAAAAATTCATCTTAAAATCAATTAAGAGATTA
128 TTCAAATATTATCTGTTTTAACCAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTA
* * * * * * * * ** **
7019 TAAAACCGTTCATAATGAGTAATCAGCCTTTTAAACACATT-GGTAACTATGGATGGACTTTTCT
193 TAAAACCATTTAAAATGAGTAATAAGGCTTTTGAAGAC-TTAAGCGACTATAAATGGACTTTTCT
* * * * * * * *
7083 TGA-CAATGAATGGCTTTTTCTTCTCAT-TTTTC-AAGGTAGGCATTCTAATATTATCTGTTTTA
257 T-ACCAATGAATGACTTTTTC--CTCATGTTCTCTAAGGCAGACATTC-AATATAATATATTTTT
* *
7145 ACAAAAAATATAAACAAATTCA
318 ACTAAAAATATAAAAAAATTCA
* * * *
7167 ACTTAAAATCAATTATGAGATTATAAAAGCATTTAAAGCGTGTAATAAGCCTTTCAAACGCATGG
1 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAACGCAT-G
**
7232 GTGACTATAGATAGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTTCCCTATGTAGACAT
65 GTGACTATAGATAGACTTTTCTTGCCAATGAATGGC-TTTTCTTCATGTTTCTTTATGTAGACAT
* * *
7297 TCAAATATTATCTGTTTTAACCAAAAACATAAAATAATTCAACTTAAAATTAATTATGAGATTAT
129 TCAAATATTATCTGTTTTAACCAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * *
7362 AAAACCATTTAAAATAAGTAATAAGGCTTATGAAGACTTAAGCGACTATAAATGGACTTTTTTTG
194 AAAACCATTTAAAATGAGTAATAAGGCTTTTGAAGACTTAAGCGACTATAAATGGACTTTTCTTA
* * * * * * *
7427 CCAATGGATAACTTTTACCACACGTTCTCTGAGGCAAACATTCAATTATAATATATTTTTACTAA
259 CCAATGAATGACTTTTTCCTCATGTTCTCTAAGGCAGACATTCAA-TATAATATATTTTTACTAA
* *
7492 AGATGTAAAAAAATTCA
323 AAATATAAAAAAATTCA
* * * * * *
7509 ATTTAAAATCAATTATGAGATTATAAAACTAGTTAAAGTGAGTAATAAGGCTTTTGAAGGCATAG
1 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAACGCAT-G
* **
7574 GTGACTTTAGATAGACTTTTCTTGCCAATGAATGGCTTTTCTTCATGTTTCTCAATGTAGACATT
65 GTGACTATAGATAGACTTTTCTTGCCAATGAATGGCTTTTCTTCATGTTTCTTTATGTAGACATT
* * * * *
7639 CAAATGTTATCTATTTTAACCAAAAATGTAAAAAAATTCATCTTAAAATTAATTATGAGATTATA
130 CAAATATTATCTGTTTTAACCAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
* * * *
7704 AAATCATTTAAAGTGAGTGATAAGGCTTTTGAAGACTTAAGCGACTATAAATGGACTTTTCTTAT
195 AAACCATTTAAAATGAGTAATAAGGCTTTTGAAGACTTAAGCGACTATAAATGGACTTTTCTTAC
* * * * * * *
7769 CAATGGATGACTGTTGCTTTATG-TCTCTTGAGGCAGACATTCAATTATAATATA-TTTTAATAA
260 CAATGAATGACTTTTTCCTCATGTTCTC-TAAGGCAGACATTCAA-TATAATATATTTTTACT-A
*
7832 AAAATATAAAAACATTCA
322 AAAATATAAAAAAATTCA
* * * ** **
7850 ACTTACAATCAATTATGAGATCATAAAACCATTTAAAGCCAGTAATAACTCTTTCGAGTGCATGG
1 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAACGCATGG
* * * * * * *
7915 ATGACTATATATGGACTTTTCTTGCCAATGAATGCCTTTTCTTCTTATTTCTTAAGGTAGACATT
66 -TGACTATAGATAGACTTTTCTTGCCAATGAATGGCTTTTCTTCATGTTTCTTTATGTAGACATT
*
7980 CAAATATTATCTGTTTTAA-CAAAAACTATAAAAAAATTCAACTTAAAATCAATTATGAGATCAC
130 CAAATATTATCTGTTTTAACCAAAAA-TATAAAAAAATTCAACTTAAAATCAATTATGAGATTA-
* * * ** * * * * * *
8044 AAAAAGCTTTTAAAGCGAGAAATAAGGCTTTTCAA-ACGCATGAGTGACTAT-AGTGGACTTTTC
193 TAAAACCATTTAAAATGAGTAATAAGGCTTTTGAAGA--CTTAAGCGACTATAAATGGACTTTTC
* * * * * * * * *
8107 TTACCAATAAATGTCTTTTTCTTTATGTT-TCCCAATGTAGACATTCAA-ATACTATCTGTTTTA
256 TTACCAATGAATGACTTTTTCCTCATGTTCT-CTAAGGCAGACATTCAATATAATATAT-TTTT-
* *
8170 ACCAAAAATGTAAAAAAAATTCA
318 ACTAAAAATAT-AAAAAAATTCA
** * * * * *
8193 ACTTAAAATCAATTATGAGATTATAAAATTATTTAAAACGGGTAATAAGGGTTTCGAATGTATGG
1 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAACGCAT-G
* * ** * * * *** *
8258 GTGACTATATATGGACTTTTCTTTTCAATAAAGGGCTTTTTTTCCCCTTT-TTTAGGTAGACATT
65 GTGACTATAGATAGACTTTTCTTGCCAATGAATGGCTTTTCTTCATGTTTCTTTATGTAGACATT
* ** * *
8322 CAAATATTATCTTTTTTAATAAAAAAATATAAAAAAAATCAACTTAAAATCAATTATAAGATTAT
130 CAAATATTATCTGTTTTAA-CCAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTAT
* * * * ** * * * *
8387 AAAACTATTTAAAACGAGTAATAAGGCTTTCGAATG-CATGGGTGGCTATAGATGCACTTTT-TT
194 AAAACCATTTAAAATGAGTAATAAGGCTTTTGAA-GACTTAAGCGACTATAAATGGACTTTTCTT
* * * * * * * * *
8450 GCCAATGAATGGCTTTTT-CTCCATGTTTTCCT-ATGTAGACATTTAA-ATATTATCTGTTTAAA
258 ACCAATGAATGACTTTTTCCT-CATGTTCT-CTAAGGCAGACATTCAATATAATATAT-TTT-TA
* ** *
8512 CCAAAAACGTAAAACAATTCA
319 CTAAAAATATAAAAAAATTCA
* * * * * * *
8533 AC-CAAACATCAATTATGAGATTATAAAACCATTCAAAGTGAGTAATATGACTTACGAA-GACTT
1 ACTTAAA-ATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAACG-CAT
* * * * * ** * * ** *** * *
8596 AAGCGACTATAAAT-GAAGTTTTCTTGCCAATGGATAACTTTGGCTTTACATTTCCCAAGGCAGA
64 -GGTGACTATAGATAG-ACTTTTCTTGCCAATGAATGGCTTT-TCTTCATGTTTCTTTATGTAGA
* * * * * * * * * *
8660 CATTTAATTATAATATATTCTAA-TAAAAAAAGTAAAAAAATTTAACTTAAAATTAATTATGAGA
126 CATTCAAATATTATCTGTTTTAACCAAAAATA-TAAAAAAATTCAACTTAAAATCAATTATGAGA
** * * * * ** * *
8724 TTATAAAACCATTTAAAGCGAGTATTAAGGCTTTCGAAGGCATGGGTGACTGTAAATGGACTTTT
190 TTATAAAACCATTTAAAATGAGTAATAAGGCTTTTGAAGACTTAAGCGACTATAAATGGACTTTT
* * * ** * * * * * * *
8789 CTTGCTAATGAATGGCTTTTTTTTCATGTT-TCCTAATGTAGATATTCAACTATTATCTGTTTTG
255 CTTACCAATGAATGACTTTTTCCTCATGTTCT-CTAAGGCAGACATTCAA-TATAATATATTTTT
* *
8853 A-TCAAAAATGTTAAAAAATTCA
318 ACT-AAAAATATAAAAAAATTCA
* * ** *
8875 A-TATAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTGACAA-TATTT-GAATGGACT
1 ACT-TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAA-CG-C-
* ** * * * * ** **** **** *
8937 TTTCTTGCCAATGGAT-GACTTTTACTT--C-A-G-GTTTC-TTGAGACAAACAT-TTTAT-TAT
62 -ATGGTGACTATAGATAGACTTTT-CTTGCCAATGAATGGCTTTTCTTCATGTTTCTTTATGTAG
**** * * * *
8993 A-A--C--ATATT-T-TAACATAA-AATATA----AAAAAATTCAACTTAAAATCAATTATGCGA
125 ACATTCAAATATTATCTGTTTTAACCAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGA
*** ** * **
9046 TTATAAAACCATTTAAAGCAAGTAATAAGG-TTTTCGAATG-CTTGGGTGACTATAGGTGGAC-T
190 TTATAAAACCATTTAAAATGAGTAATAAGGCTTTT-GAA-GACTTAAGCGACTATAAATGGACTT
*** * * * * * * *
9108 TTCTTGGTAATGAATGACTTTTTCTTC-TCGTTTTTTGAGGTAAACATTCAA-AT-ATGATCTCT
253 TTCTTACCAATGAATGACTTTTTCCTCAT-GTTCTCTAAGGCAGACATTCAATATAAT-ATAT-T
*
9170 TTTAATAAAAA-ATGAAAAGAAATTCA
315 TTTACTAAAAATAT-AAAA-AAATTCA
* * * * ** *
9196 ACTTCAAATCAATTATGAGATTATAAAATCATTTAAAGTGGGTAATAAGAATTTCGAA-GACTTA
1 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAACG-CAT-
* ** * * * * * * * * **
9260 AGCAAATATAAATAGACTTTTCCTACCAATGGATGACTTTTGCCTCACGTTTCTCGA-GATA-AG
64 GGTGACTATAGATAGACTTTTCTTGCCAATGAATGGCTTTT-CTTCATGTTTCTTTATG-TAGA-
* * * * * *
9323 CATTCAATTGTTATATATTTTAACAAAAAATATAAAAAATTTCAACTTAAAATCAATTATGAGAT
126 CATTCAAATATTATCTGTTTTAACCAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGAT
* ** * * * ** * * *
9388 TATAAAACCGTTTAAAGCGAGTAATAAGGCTTTCGTATG-CATGGGTGTCTATAGATGGACTTTT
191 TATAAAACCATTTAAAATGAGTAATAAGGCTTTTG-AAGACTTAAGCGACTATAAATGGACTTTT
* * ** * * *
9452 CTTTCCAATGAATGACTTTTTCTTCTCAT-TT-TTTGTGGTAGACATTCAA-ATATTATCTGTTT
255 CTTACCAATGAATGACTTTTTC--CTCATGTTCTCTAAGGCAGACATTCAATATAATATAT-TTT
*
9514 TAACAAAAAATATAAAAAAATTCA
317 T-ACTAAAAATATAAAAAAATTCA
* *
9538 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGCCTTTCGAACGCATGG
1 ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAACGCAT-G
* *
9603 GTGACTATAGATGGACTTTTCTTACCAATGAATG
65 GTGACTATAGATAGACTTTTCTTGCCAATGAATG
9637 TTTTAACCAA
Statistics
Matches: 1973, Mismatches: 400, Indels: 193
0.77 0.16 0.08
Matches are distributed among these distances:
318 2 0.00
319 7 0.00
320 19 0.01
321 101 0.05
322 82 0.04
323 5 0.00
324 1 0.00
325 2 0.00
326 2 0.00
327 11 0.01
328 4 0.00
329 5 0.00
330 1 0.00
332 1 0.00
333 1 0.00
334 5 0.00
335 2 0.00
336 9 0.00
337 6 0.00
338 2 0.00
339 6 0.00
340 120 0.06
341 748 0.38
342 633 0.32
343 179 0.09
344 18 0.01
345 1 0.00
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (339 bp):
ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAACGCATGG
TGACTATAGATAGACTTTTCTTGCCAATGAATGGCTTTTCTTCATGTTTCTTTATGTAGACATTC
AAATATTATCTGTTTTAACCAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
AACCATTTAAAATGAGTAATAAGGCTTTTGAAGACTTAAGCGACTATAAATGGACTTTTCTTACC
AATGAATGACTTTTTCCTCATGTTCTCTAAGGCAGACATTCAATATAATATATTTTTACTAAAAA
TATAAAAAAATTCA
Found at i:9382 original size:171 final size:170
Alignment explanation
Indices: 8930--9636 Score: 779
Period size: 171 Copynumber: 4.1 Consensus size: 170
8920 CAATATTTGA
* * * * ** * *
8930 ATGGACTTTTCTTGCCAATGGATGACTTTTACTTCAGGTTTCTTGAGACAAACATTTTATTATAA
1 ATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACGTTTCTTGAGATAAACATTCAAATATTA
* * *
8995 CATATTTTAACATAAAATATAAAAAAATTCAACTTAAAATCAATTATGCGATTATAAAACCATTT
66 TATATTTTAACAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTT
* *
9060 AAAGCAAGTAATAAGGTTTTCGAATGCTTGGGTGACTATAG
131 AAAGCGAGTAATAAGGCTTTCGAA-GCTTGGGTGACTATAG
* ** * * * *
9101 GTGGAC-TTTCTTGGTAATGAATGACTTTTTCTTCTCGTTTTTTGAGGTAAACATTCAAATATGA
1 ATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACGTTTCTTGAGATAAACATTCAAATATTA
* * * * * *
9165 TCTCTTTTAATAAAAAATGA-AAAGAAATTCAACTTCAAATCAATTATGAGATTATAAAATCATT
66 TATATTTTAACAAAAAAT-ATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * ** ** ** * *
9229 TAAAGTGGGTAATAAGAATTTCGAAGACTTAAGCAAATATAA
130 TAAAGCGAGTAATAAGGCTTTCGAAG-CTTGGGTGACTATAG
* * * * * * * * * *
9271 ATAGACTTTTCCTACCAATGGATGACTTTTGCCTCACGTTTCTCGAGATAAGCATTCAATTGTTA
1 ATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACGTTTCTTGAGATAAACATTCAAATATTA
* *
9336 TATATTTTAACAAAAAATATAAAAAATTTCAACTTAAAATCAATTATGAGATTATAAAACCGTTT
66 TATATTTTAACAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTT
* * *
9401 AAAGCGAGTAATAAGGCTTTCGTATGCATGGGTGTCTATAG
131 AAAGCGAGTAATAAGGCTTTCG-AAGCTTGGGTGACTATAG
* * * * * * *
9442 ATGGACTTTTCTTTCCAATGAATGACTTTTTCTTCTCATTTTTTGTGGTAGACATTCAAATATTA
1 ATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACGTTTCTTGAGATAAACATTCAAATATTA
* *
9507 TCTGTTTTAACAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTT
66 TATATTTTAACAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTT
* * *
9572 AAAGTGAGTAATAAGCCTTTCGAACGCATGGGTGACTATAG
131 AAAGCGAGTAATAAGGCTTTCGAA-GCTTGGGTGACTATAG
*
9613 ATGGACTTTTCTTACCAATGAATG
1 ATGGACTTTTCTTGCCAATGAATG
9637 TTTTAACCAA
Statistics
Matches: 433, Mismatches: 97, Indels: 12
0.80 0.18 0.02
Matches are distributed among these distances:
169 1 0.00
170 133 0.31
171 297 0.69
172 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (170 bp):
ATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACGTTTCTTGAGATAAACATTCAAATATTA
TATATTTTAACAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTT
AAAGCGAGTAATAAGGCTTTCGAAGCTTGGGTGACTATAG
Found at i:9736 original size:126 final size:125
Alignment explanation
Indices: 9509--9767 Score: 313
Period size: 126 Copynumber: 2.0 Consensus size: 125
9499 AAATATTATC
9509 TGTTTTAACAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
1 TGTTTTAACAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
** ** * * *
9574 AGTGAGTAATAAGCCTTTCGAACGCATGGGTGACTATAGATGGACTTTTCTTACCAATGAA
66 AGTGAGTAATAAGCCTTTC-AACAAATAAGTAACTATAAATAGACTTTTCTTACCAATGAA
* * * * *
9635 TGTTTTAACCAAAAATGTAAGAAAATTTAACTTAAAATGAATTATGAGATTATAAAACCATTTAA
1 TGTTTTAACAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
** ** * *
9700 AGTGAGTAATTGGGTTTTC-ACAAATTTAAGTAACTATAAATAGACTTTTCTTATCAATGGA
66 AGTGAGTAATAAGCCTTTCAACAAA--TAAGTAACTATAAATAGACTTTTCTTACCAATGAA
9761 TGATTTT
1 TG-TTTT
9768 TGCCTCGCGT
Statistics
Matches: 112, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
124 3 0.03
126 105 0.94
127 4 0.04
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.34
Consensus pattern (125 bp):
TGTTTTAACAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
AGTGAGTAATAAGCCTTTCAACAAATAAGTAACTATAAATAGACTTTTCTTACCAATGAA
Found at i:10053 original size:468 final size:468
Alignment explanation
Indices: 9189--10103 Score: 1169
Period size: 468 Copynumber: 2.0 Consensus size: 468
9179 AAATGAAAAG
* * *
9189 AAATTCAACTTCAAATCAATTATGAGATTATAAAATCATTTAAAGTGGGTAATAAGAATTTCGAA
1 AAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGAATTTCGAA
*
9254 GACTTAAGCAAATATAAATAGACTTTTCCTACCAATGGATGACTTTTGCCTCACGTTTCTCGAGA
66 AACTTAAGCAAATATAAATAGACTTTTCCTACCAATGGATGACTTTTGCCTCACGTTTCTCGAGA
*** *
9319 TAAGCATTCAATTGTTATATATTTTAACAAAAAATATAAAAAATTTCAACTTAAAATCAATTATG
131 TAAGCATTCAATTACAATATATTTTAACAAAAAATATAAAAAAATTCAACTTAAAATCAATTATG
* * * ** * * *
9384 AGATTATAAAACCGTTTAAAGCGAGTAATAAGGCTTTCGTATGCATGGGTGTCTATAGATGGACT
196 AGATTATAAAACCATTTAAAGCGAGTAATAAAGCTTTCGTAAGCATAAGCGACTATAAATGGACT
* * ** ** * * * *
9449 TTTCTTTCCAATGAATGACTTTTTCTTCTCATTTTTTGTGGTAGACATTCAAATATTATCTGTTT
261 TTTCTTGCCAATGAATAACTTTTGATTCTCATTTCCTGAGGTAGACATTCAAATATAATATATTT
**
9514 TAACAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGA
326 TAACAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAACGA
*
9579 GTAATAAGCCTTTCGAACGCATGGGTGACTATAGATGGACTTTTCTT-ACCAATGAATGTTTTAA
391 GTAATAAGCCTTTCGAACGCATGGGTGACTATAGATGAACTTTTCTTGA-CAATGAATGTTTTAA
9643 CCAAAAATGTAAGA
455 CCAAAAATGTAAGA
* * ** **
9657 AAATTTAACTTAAAATGAATTATGAGATTATAAAACCATTTAAAGTGAGTAATTGGGTTTTC-AC
1 AAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGAATTTCGA-
* * * * * * *
9721 AAATTTAAGTAACTATAAATAGACTTTTCTTATCAATGGATGATTTTTGCCTCGCGTTT-TCCGA
65 AAACTTAAGCAAATATAAATAGACTTTTCCTACCAATGGATGACTTTTGCCTCACGTTTCT-CGA
* * * * *
9785 GGT-CGACATGT-AATTACAATATATTTTAACAAAAAATGTAAAAAAATTCAATTTAAAATCTAT
129 GATAAG-CAT-TCAATTACAATATATTTTAACAAAAAATATAAAAAAATTCAACTTAAAATCAAT
* * *
9848 TATGAGATTATTAAACCATTTAAAGTGAGTAATAAAGCTTTCG-AAGACTTAAGCGACTATAAAT
192 TATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCTTTCGTAAG-CATAAGCGACTATAAAT
* * * * *
9912 GGATTTTTCTTGCTAATGCATAACTTTTGATTCTCGTTTCCTGAGGTAGACAATT-AATTATAAT
256 GGACTTTTCTTGCCAATGAATAACTTTTGATTCTCATTTCCTGAGGTAGAC-ATTCAAATATAAT
* * *
9976 ATATTTTAATAAAAAATATAAAAAAATTTAACTTAAAATTAATTATGAGATTATAAAACCATTTA
320 ATATTTTAACAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTA
* * *
10041 AAACGAGTAATAAGGCTTTTGAACGCATGGGTGACTATAGGTGAACTTTTCTTGACAATGAAT
385 AAACGAGTAATAAGCCTTTCGAACGCATGGGTGACTATAGATGAACTTTTCTTGACAATGAAT
10104 AGCTTTTTCT
Statistics
Matches: 379, Mismatches: 61, Indels: 14
0.83 0.13 0.03
Matches are distributed among these distances:
467 5 0.01
468 369 0.97
469 5 0.01
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.35
Consensus pattern (468 bp):
AAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGAATTTCGAA
AACTTAAGCAAATATAAATAGACTTTTCCTACCAATGGATGACTTTTGCCTCACGTTTCTCGAGA
TAAGCATTCAATTACAATATATTTTAACAAAAAATATAAAAAAATTCAACTTAAAATCAATTATG
AGATTATAAAACCATTTAAAGCGAGTAATAAAGCTTTCGTAAGCATAAGCGACTATAAATGGACT
TTTCTTGCCAATGAATAACTTTTGATTCTCATTTCCTGAGGTAGACATTCAAATATAATATATTT
TAACAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAACGA
GTAATAAGCCTTTCGAACGCATGGGTGACTATAGATGAACTTTTCTTGACAATGAATGTTTTAAC
CAAAAATGTAAGA
Found at i:10079 original size:171 final size:170
Alignment explanation
Indices: 9637--10221 Score: 552
Period size: 171 Copynumber: 3.4 Consensus size: 170
9627 CCAATGAATG
* * *
9637 TTTTAACCAAAAATGTAAGAAAATTTAACTTAAAATGAATTATGAGATTATAAAACCATTTAAAG
1 TTTTAACAAAAAATATAAAAAAATTTAACTTAAAATGAATTATGAGATTATAAAACCATTTAAAG
* * * * ** * * * * *
9702 TGAGTAAT-TGGGTTTT-CACAAATTTAAGTAACTATAAATAGACTTTTCTT-ATCAATGGATGA
66 CGAGTAATAAGGCTTTTGAACGCA--TAAGTGACTATAAATGGACTTTTCTTGCT-AATGAATAA
* * * * *
9764 TTTTTGCCTCGCGTTTTCC-GAGGTCGACATGTAATTACAATATA
128 CTTTTGCTTCACG-TTTCCTGAGGTAGACAT-TAATTATAATATA
* * * ** *
9808 TTTTAACAAAAAATGTAAAAAAATTCAATTTAAAATCTATTATGAGATTATTAAACCATTTAAAG
1 TTTTAACAAAAAATATAAAAAAATTTAACTTAAAATGAATTATGAGATTATAAAACCATTTAAAG
* * * * * * *
9873 TGAGTAATAAAGCTTTCGAA-GACTTAAGCGACTATAAATGGATTTTTCTTGCTAATGCATAACT
66 CGAGTAATAAGGCTTTTGAACG-CATAAGTGACTATAAATGGACTTTTCTTGCTAATGAATAACT
* *
9937 TTTGATTCTCGTTTCCTGAGGTAGACAATTAATTATAATATA
130 TTTGCTTCACGTTTCCTGAGGTAGAC-ATTAATTATAATATA
* * *
9979 TTTTAATAAAAAATATAAAAAAATTTAACTTAAAATTAATTATGAGATTATAAAACCATTTAAAA
1 TTTTAACAAAAAATATAAAAAAATTTAACTTAAAATGAATTATGAGATTATAAAACCATTTAAAG
** ** * *
10044 CGAGTAATAAGGCTTTTGAACGCATGGGTGACTATAGGTGAACTTTTCTTGAC-AATGAATAGCT
66 CGAGTAATAAGGCTTTTGAACGCATAAGTGACTATAAATGGACTTTTCTTG-CTAATGAATAACT
* * * * * * *
10108 TTTTCTTCACATTTCTTGATGTAGACATTCAAATATTATCTA
130 TTTGCTTCACGTTTCCTGAGGTAGACATT-AATTATAATATA
* * * **
10150 TTTTAGCAAAAAATATAAGAAAATTTAAGTTAAAATGAATTATGAGATTATAAAAGTATTTAAAG
1 TTTTAACAAAAAATATAAAAAAATTTAACTTAAAATGAATTATGAGATTATAAAACCATTTAAAG
10215 CGAGTAA
66 CGAGTAA
10222 NNNNNNNNNN
Statistics
Matches: 339, Mismatches: 66, Indels: 18
0.80 0.16 0.04
Matches are distributed among these distances:
170 8 0.02
171 321 0.95
172 9 0.03
173 1 0.00
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.36
Consensus pattern (170 bp):
TTTTAACAAAAAATATAAAAAAATTTAACTTAAAATGAATTATGAGATTATAAAACCATTTAAAG
CGAGTAATAAGGCTTTTGAACGCATAAGTGACTATAAATGGACTTTTCTTGCTAATGAATAACTT
TTGCTTCACGTTTCCTGAGGTAGACATTAATTATAATATA
Found at i:11220 original size:171 final size:169
Alignment explanation
Indices: 10921--15881 Score: 1528
Period size: 170 Copynumber: 29.2 Consensus size: 169
10911 NNNNNNNNNN
* * * * *
10921 AAATCAATTATGAGATTATAAAACTATTTAAAACGAGTAATAAGGCTTT-GAAAG-ACTTGATCG
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCA-TAGGT-G
* * * * * * **** * * *
10984 ATTATAAATGAACTTTTCTTGCCAATCAATAACTTTTGCTTTGTGTTTCCTGAGGCAAACATTCA
64 ACTATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACATTTTCTGAGG-TAGCATTCA
* * *
11049 ATTATAATATATTTTAACAAAAAGTGAAAAAAAATTCAACTTA
128 AATATTATCTATTTTAACAAAAA-TGAAAAAAAATTCAACTTA
* *
11092 AAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGGGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGAC
* * *
11157 TATAGATGGACTTTTCTTGCCAATGAATGACTTTCTCTCCACATTTTCTGATGTATGCATTCAAA
66 TATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACATTTTCTGAGGTA-GCATTCAAA
** * * * *
11222 GGTTATCTGTTTTAGA-AAAAAGTGTAAGAAAATTGAACTTA
130 TATTATCTATTTTA-ACAAAAA-TGAAAAAAAATTCAACTTA
** * * * * * * * * *
11263 AAAAGAACTATGAGATTATAAAATCATTTAAAGTGAGTAATAAGGCCTTCGAAGACTTAAGCGAT
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGAC
* ** * ** * *
11328 TATAAATGGACTTTTCTTATCAATGAATGACTTTTACTTCACA-TTTCCCAGGAAACACATTCAA
66 TATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACATTTTCTGAGG-TA-GCATTCAA
* *** * *
11392 TTGCAATATATTTTAACAAAAAAT-ATAAAAAAATTCAACATA
129 ATATTATCTATTTTAAC-AAAAATGA-AAAAAAATTCAACTTA
* * *
11434 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAACGCTTAGGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGAC
* * * * *
11499 TATAGATGGACTTTTCTTGTCAATGAATGTCTTTTTCTTCACA-TTTCTCAATGTAAACATTCAA
66 TATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACATTTTCT-GAGGT-AGCATTCAA
* *
11563 ATATTATCTGTTTTAACCAAAAATG-TAAAAAATTCAACTTA
129 ATATTATCTATTTTAA-CAAAAATGAAAAAAAATTCAACTTA
* * * * *
11604 AAATAAATTGA-GAGATTATAAAACTATTTAAAACGAGTAATAAGGCTTTCGAAAG--TGGGTGA
1 AAATCAATT-ATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGA
* * * ** * **
11666 CTGTAGATGAACTTTTCTTGCCAATGAATGTCTTTTTCTTCATGTTTT-TCAATATAGACATTCA
65 CTATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACATTTTCT-GAGGTAG-CATTCA
* * ** * *
11730 AATATTATCTGTTTTGACAAAAAAATGCTAAAAAATTGAACATA
128 AATATTATCTATTTT-A-ACAAAAATGAAAAAAAATTCAACTTA
* * * * * *
11774 AAATCAATTATAAGGTTACAAAACCATTTAAAGCGAGTAAT-AGGGTTTACGAATGCATAGGTTA
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT-CGAAGGCATAGGTGA
* ** *** * *
11838 CTATAGATGCACTTTTCTTATCAATGAAT-AGCTTTTTCTTCTTGTTTTTTGAGGTAGATATTCA
65 CTATAGATGGACTTTTCTTGCCAATGAATGA-CTTTTTCTTCACATTTTCTGAGGTAG-CATTCA
* *
11902 AATATTATCTATTTTAATAAAAAAT-ATAAAAAAATTAAACTTA
128 AATATTATCTATTTTAA-CAAAAATGA-AAAAAAATTCAACTTA
* * * * * * * *
11945 AAATCAATTATGATATTATAAAATCATTTGAAGCGTGTAATATGGCTTTCAAACGCATTGGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGAC
* * * * *
12010 TATAGATGGACTTTTCTTGCTAATGAAT-ATCTTTTTCTTTAC-GTTTCTTGATGTAGGCAATCA
66 TATAGATGGACTTTTCTTGCCAATGAATGA-CTTTTTCTTCACATTTTC-TGAGGTA-GCATTCA
* * *
12073 AATATTATTTGTTTTAACCAAAAATG-TAAAAAATTCAACTTA
128 AATATTATCTATTTTAA-CAAAAATGAAAAAAAATTCAACTTA
* * * * * *
12115 AAATTAATTAAGAGATTATAAAACCATTTAAAGGGAGTAATAAGGCTTTCGAAAGCATGGGTTAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGAC
* * * * * * *
12180 TATAGATGCACTTTTCTTGGCAATAAAT-AGCTTTTTTTTCTC-GTTTCTTGAGGTAGACATTCT
66 TATAGATGGACTTTTCTTGCCAATGAATGA-CTTTTTCTTCACATTTTC-TGAGGTAG-CATTCA
* * * * * *
12243 AATCTTATCTGTTTTAATGAAAAAT-ATAAAACAATTTAACTCA
128 AATATTATCTATTTTAA-CAAAAATGA-AAAAAAATTCAACTTA
* * * * * * *
12286 AAATCAATTATGAGATTATAAGATCATTTAAAGCGAGTAATAAGGCTTTTGAAGACTTAAGCGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGAC
* * * * * * * *
12351 TATAAATAGTC-TTTCTTGCCAACGGATGACTTTTGCCTT-ACA-TTTCTTGAGGCAAACATTCA
66 TATAGATGGACTTTTCTTGCCAATGAATGACTTTT-TCTTCACATTTTC-TGAGG-TAGCATTCA
* ** * * *** *
12413 ATTACAATGTATTTTAATAAAGAATTTTAAAAAATTTAACTTA
128 AATATTATCTATTTTAACAAA-AATGAAAAAAAATTCAACTTA
** * * * *
12456 AAATCAATTATGAGATTATAAAATAATTTAAAGCGAGTAATTA-GCTTTACGAAGGCTTAAGCGA
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT-CGAAGGCATAGGTGA
** * * * * *
12520 CGGTACATGGACTTTTCTTGCCAATGGATAACTTTTACTT--CATGTTTCTCAAGGTAGACATTC
65 CTATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACAT-TTTCT-GAGGTAG-CATTC
* ** * * *
12583 AATTACAATATATTTTAACAAAAAATGTAAAACAATTCAACTTA
127 AAATATTATCTATTTTAAC-AAAAATGAAAAAAAATTCAACTTA
* * * * *
12627 AAATCAATTATGAGATTATAAAACTATTTAGAGTGAGTAATGAGGC--T-------ATA-TTG--
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGAC
* * * *
12680 TA-A-ATGGACTTTT-TTAGCTAATGAATGACTTTTTTTTCATA-TTTCTCGATGTAGACATTCA
66 TATAGATGGACTTTTCTT-GCCAATGAATGACTTTTTCTTCACATTTTCT-GAGGTAG-CATTCA
* * * * *
12741 AATATTATCTGTTTTACCTAAAAAT-ATAAGATAATTTAACTTA
128 AATATTATCTATTTTAAC-AAAAATGA-AAAAAAATTCAACTTA
* * * * *** *
12784 AGATGAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGATTTCGAAGATTTAAGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGAC
* * * * * * ** *
12849 TATAAATAGACTTTTCTTGCCAATG-GTGACTTTTGCTTCACGTTTCCTGAGACAGACATTCAAT
66 TATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACATTTTCTGAGGTAG-CATTCAAA
* * ** ** * *
12913 TATAATATATTTTAA-AAAACTATTTAAAGCAATTAAAAGGCTTTT
130 TATTATCTATTTTAACAAAA--ATGAAAAAAAATT-CAA--C-TTA
** ** * * * *** ** ** *******************
12958 GTAT-AGA-TGGGTGACTATAGATGGATTT--TTCTTGTCAANNNNNNNNNNNNNNNNNNNNNNN
1 AAATCA-ATTATGAGATTATAAAACCATTTAAAGCGAGT-AA----TAAGGCTTTCGAAGGCATA
*****************************************************************
13019 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
60 GGTGACTATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACATTTTCTGAGGTAGCAT
****************** *
13084 NNNNNNNNNNNNNNNNNNAATAAAAAAT-ATAAAAAAATTCAACTTA
125 TCAAATATTATCTATTTTAA-CAAAAATGA-AAAAAAATTCAACTTA
* * * * * * * * *
13130 AAATTAATTATGGGATTATAAAATCATTTAAGGCGAGTAATGAGGATTTCGAAGACTTAAGCT-A
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCAT-AGGTGA
* * * * * * *
13194 CTATAAATGGAC-TTTCTTGCTAATGGATGACTTTTGCCTCACGTTTTCTGCA-GAAGACATTCA
65 CTATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACATTTTCTG-AGGTAG-CATTCA
* * * * * ********
13257 ATTGTAATATATTTTAACAAAAAATGTAAAAAAATNNNNNNNN
128 AATATTATCTATTTTAAC-AAAAATGAAAAAAAATTCAACTTA
** * * * * * * *
13300 NNATCAATTATGAGATTAAAAAACTATTTAAAGCAAGTAATAAAGCTTTCGAATGCATGGGTGAG
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGAC
* ** ** * *
13365 TATAGATGGACTTTTCTTGCCACTGAATGGTTTTTTCTTCATGTTTCCCT-ATGTAGACATTCAA
66 TATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACATTT-TCTGAGGTAG-CATTCAA
* * * *
13429 ATATTATCTATTTTTACCAAAATGTAAAAAAATTTAACTTA
129 ATATTATCTATTTTAACAAAAATGAAAAAAAATTCAACTTA
** * * * * * *
13470 AAATCAATTATCTGATTATAAAATCATTTAAAACGAGTAGTAAGGATTTCGAAGACTTAAGG-GA
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCAT-AGGTGA
* * * * * *
13534 CTATA-ACTGGACTTTT-TCTGCTAATGGATGACTTTTGC--CTCATGTTTCACGAGGCAGACAT
65 CTATAGA-TGGACTTTTCT-TGCCAATGAATGACTTTTTCTTCACAT-TTTC-TGAGGTAG-CAT
* * * ** * * *
13595 TCAATTCTAAAATATTTTAATAGAAAATGTAAAAAATTTCAACTTA
125 TCAAATATTATCTATTTTAACA-AAAATGAAAAAAAATTCAACTTA
* ********** * * *
13641 AAATTAATTNNNNNNNNNNAAAACCATTTAAAGTGAGTAATAAGGCTTTC-AGATGCATGGGTGA
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGA-AGGCATAGGTGA
* * * * * * * *
13705 CTATATATCGACTTTTCTTACCAATGAATGGCTTTTTCTTCTCGTTCTTC-AAGGTAAACA-TCA
65 CTATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACATT-TTCTGAGGT-AGCATTCA
* *
13768 AATATTATCTGTTTTAACAAAAAAT-ATAAAAAAATTCAACTTN
128 AATATTATCTATTTTAAC-AAAAATGA-AAAAAAATTCAACTTA
********* * * ** * *
13811 NNNNNNNNNATGAGATTATAAAACCATTTAAAGAGAGTAATAAAGCTTTTAAACGCAT-GAGTAA
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAG-GTGA
* ** * * * * **
13875 CTATAG-TGGACTTTTCTTACCAATGAATGTGTTTTTATTCAC-GTTTCTTAATGTGAAAATTCA
65 CTATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACATTTTC-TGAGGT-AGCATTCA
* *
13938 AATATTATCTGTTTTAACTAAAAAT-ATAAAAAATATCAACTTA
128 AATATTATCTATTTTAAC-AAAAATGAAAAAAAAT-TCAACTTA
* * * * **
13981 AAATCAAATAAGAGATTATAAAACTATTTAAAGCGAGTAATAAGGC-TTCGAACGCATAAATGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGAC
* * * * * *
14045 TATAGATGGACTTCTCTTGTCAATAAATGGCTTTTTCTTC-C-TGTTTTTCAAGGTAGGCATTCA
66 TATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACAT-TTTCT-GAGGTA-GCATTCA
* * * **********
14108 AACATTATCTATTTTAATAAAAAAT-ATAAAAANNNNNNNNNN
128 AATATTATCTATTTTAA-CAAAAATGAAAAAAAATTCAACTTA
** * * *
14150 AAATCAATTATGAGATTATAAAATTATTTAAAGCGAGTCATAAAGC-TTCGAATGCAT-GCGTGA
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAG-GTGA
* ** * * * * * * *
14213 CTATAGATGGACCTTTCTTATCAATAAAT-ATTTTTTTCTTCACGTTTCCCT-ATGTAAACAATC
65 CTATAGATGGACTTTTCTTGCCAATGAATGA-CTTTTTCTTCACATTT-TCTGAGGT-AGCATTC
* * * * *
14276 AAATATTATTTGTTTTTACCAAAAAT-ATAAAAAAATTTAACTTN
127 AAATATTATCT-ATTTTAACAAAAATGA-AAAAAAATTCAACTTA
********* * * * * ** * * *
14320 NNNNNNNNNATGTGATTATAAAACCATTTAAAGCAAGTAATAACGATTTTAAAGACTTAAGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGAC
* * * * * * ** * * * * *
14385 TATAAATGGAC-TTTCCTACCAATGGATGACTTTTACCTCATGTTTCCAGAGATAAACATTCAAT
66 TATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACATTTTCTGAGGT-AGCATTCAAA
* ** * * * *
14449 TATAAAATATTTTAATGC-AAAATGTAAAAAATTTTAACTTT
130 TATTATCTATTTTAA--CAAAAATGAAAAAAAATTCAACTTA
* * * *
14490 AAATCAATTATGAGATTATAAAACCATTTAAAGCGCGTAATAAGGCTTTCGAATGTATGGGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGAC
** * ** * * * * *
14555 TATAGATCTACTTTTTTTTGTAAATGAATGGCTTTTTCTTCTCGTTTTTTGAGATAGACATTCAA
66 TATAGATGGAC-TTTTCTTGCCAATGAATGACTTTTTCTTCACATTTTCTGAGGTAG-CATTCAA
* * *
14620 ATATTATCT-GTTTAACAAAAAACGTAAAAAAATTCAACTTA
129 ATATTATCTATTTTAAC-AAAAATGAAAAAAAATTCAACTTA
********** * * *
14661 AAATCANNNNNNNNNNTATAAAACCATTTAAAGCGAGTAATTAA-ACTTTCAAACGCAT-GAGTG
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAA-TAAGGCTTTCGAAGGCATAG-GTG
* * * * **
14724 ACTATAG-TGGACTTTTCTTGCCAATAAATGTCTTTTTCTTCA-ATTTTTTTGATGTAAAAATTC
64 ACTATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACA-TTTTCTGAGGT-AGCATTC
* * * *
14787 AAATATTATCTGTTCTAACTAAAAATG-TAAAATATATCAACTTA
127 AAATATTATCTATTTTAAC-AAAAATGAAAAAAAAT-TCAACTTA
* * * * *
14831 AAATCAAGTAGGAGATTATAAAACGATTTAAAGCGAGTAATAAGGC-TTCGAATGCATGGGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGAC
** * *** *
14895 TATAGATGGAGGTTTCTTACCAATGAATGGA-TTTTTCTTCTTGTTTTCTAAGGTAGGCATTCAA
66 TATAGATGGACTTTTCTTGCCAATGAAT-GACTTTTTCTTCACATTTTCTGAGGTA-GCATTCAA
* * * * *
14959 ATATTACCTGTTTCAATGAAAAATGTAAAAAAATTCAACTTA
129 ATATTATCTATTTTAA-CAAAAATGAAAAAAAATTCAACTTA
********** * * * **
15001 ANNNNNNNNNNGAGATTATGAAACTATTTAAAGCGAGTCATAAGGCTTTCGAATACAT-GAGTGA
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAG-GTGA
* * ** * * * *
15065 CTATAGATAGTCTTTTCTTGCCAATGAATGGTTTTTTCTTCCCGTTTCCCT-ATGTAGACATTC-
65 CTATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACATTT-TCTGAGGTAG-CATTCA
* * *
15128 AATATTATCTGTTTTTACCAAAAATGTAAAAAAATTCAACTTA
128 AATATTATCT-ATTTTAACAAAAATGAAAAAAAATTCAACTTA
* * *** * * ***
15171 AAATCAATTAT-ATGATTTTAAAACTATTTAAAGCGAGTCGCAAGGATTTTGAAGATTTAAGG-G
1 AAATCAATTATGA-GATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCAT-AGGTG
* * ** * ** * * *
15234 ACTATA-ACTGAACTTTTTCTAT--CAATGGATGACTTTAGCCTCATGTTTCCTGAAGCAGACAT
64 ACTATAGA-TGGAC-TTTTCT-TGCCAATGAATGACTTTTTCTTCACATTTTCTGAGGTAG-CAT
** * ** * * * * *
15296 TCATTTATAAAATATTGTAATAGAAAATGTAAAAAATTTCAACTCA
125 TCAAATATTATCTATTTTAACA-AAAATGAAAAAAAATTCAACTTA
* * * *
15342 AAATCAATTATGAGATTATAAAACCATTTAAAG-GAAGTAATAAGACTTTCGAATGCATGGGTCA
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCG-AGTAATAAGGCTTTCGAAGGCATAGGTGA
* * * * **********
15406 CTATAGATCGACTTTTCTTACCAATGAATGACTTTTTCTTCTCGTNNNNNNNNNNAGACATTCAA
65 CTATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACATTTTCTGAGGTAG-CATTCAA
* * * *
15471 ATATTATCTGTTTTCACAAAAAATGTAAAAAAATTAAACTT-
129 ATATTATCTATTTTAAC-AAAAATGAAAAAAAATTCAACTTA
* * * * * *
15512 AAATCAATTATCAGATTATAAAACCATTTAAAGAGAGTAATAAAGCGTTT-AAACGCAT-GAGTC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC-TTTCGAAGGCATAG-GTG
* * * * **
15575 AATATAG-TGGACTTTTCTTGCCAATGGATGTCTTTTTCTT--CATGTTTCTTGATGTAAAAATT
64 ACTATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACAT-TTTC-TGAGGT-AGCATT
* * *
15637 CAAATATTATATTTTTTAACAAAAAATG-TAAAAAATATCAACTTA
126 CAAATATTATCTATTTTAAC-AAAAATGAAAAAAAAT-TCAACTTA
* ********** * * *
15682 AAATCAATTAAGAGNNNNNNNNNNCATTTAAAGCGAGTAATAAGGC-TTCGAACGTATGGGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGAC
* * * * * * *
15746 TATAGGTGGACTTTTCTTGTCAATAAATGGCTGTTTCTTCTCATTTTTTGAGGTAGGCATTCAAA
66 TATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACATTTTCTGAGGTA-GCATTCAAA
* * * *
15811 TATTATCTGTTTCAATGC-AAAAT-ATAAAAAAATTAAAGTTA
130 TATTATCTATTTTAA--CAAAAATGA-AAAAAAATTCAACTTA
*
15852 AAATCAATTATGAGATTATAAAACTATTTA
1 AAATCAATTATGAGATTATAAAACCATTTA
15882 NNNNNNNNNN
Statistics
Matches: 3446, Mismatches: 1144, Indels: 401
0.69 0.23 0.08
Matches are distributed among these distances:
156 2 0.00
157 113 0.03
158 1 0.00
159 2 0.00
161 1 0.00
162 2 0.00
166 2 0.00
167 8 0.00
168 89 0.03
169 385 0.11
170 1434 0.42
171 1174 0.34
172 167 0.05
173 39 0.01
174 7 0.00
175 5 0.00
176 11 0.00
178 4 0.00
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.34
Consensus pattern (169 bp):
AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGAC
TATAGATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACATTTTCTGAGGTAGCATTCAAAT
ATTATCTATTTTAACAAAAATGAAAAAAAATTCAACTTA
Found at i:11949 original size:511 final size:505
Alignment explanation
Indices: 10921--12931 Score: 1831
Period size: 511 Copynumber: 4.0 Consensus size: 505
10911 NNNNNNNNNN
* * * *
10921 AAATCAATTATGAGATTATAAAACTATTTAAAACGAGTAATAAGGCTTT-GAAAGACTTGATCGA
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAACG-CTTGGT-GA
* * * * * *** * *
10985 TTATAAATGAACTTTTCTTGCCAATCAATAACTTTTGCTTTGTGTTTC-CTGAGGCAAACATTCA
64 CTATAGATGGACTTTTCTTGCCAATGAATAACTTTTTCTTCACGTTTCTC-AAGGTAAACATTCA
* *
11049 ATTATAATATATTTTAA-CAAAAAGTGAAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
128 AATATAATATATTTTAACCAAAAA-TG-TAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
* * *
11113 AACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAGATGGACTTTTCTTGCC
191 AACCATTTAAAGCGAGTAATAAGGCTTTCGAAAG-ATGGGTGACTATAGATGAACTTTTCTTGCC
* * ** **
11178 AATGAATGACTTTCTCTCCA-CATTTTCTGATGTATG-CATTCAAAGGTTATCTGTTTTAGAAAA
255 AATGAATG-CTTTTTCTTCATGTTTTTC-GATGTA-GACATTCAAATATTATCTGTTTTA-AAAA
* ** * *
11241 AAGTGTAAGAAAATTGAACTTAAAAAGAACTATGAGATTATAAAATCATTTAAAGTGAGTAATAA
316 AAATGTAA-AAAATTGAAC-TAAAATCAATTATGAGATTATAAAATCATTTAAAGCGAGTAATAA
* * **
11306 GGCCTTCGAAGACTTAAGCGATTATAAATGGACTTTTCTTATCAATGAATGACTTTTACTTCACA
379 GGCTTTCGAAGACTTAAGCGACTATAAAT-GACTTTTCTTATCAATGAATGACTTTTACTTCTTA
*** * * * *
11371 -TTTCCCAGGAAACACATTCAATTGCAATATATTTTAACAAAAAATATAAAAAAATTCAACATA
443 TTTTTTGAGGAAA-ACATTCAATTACAATATATTTTAATAAAAAATATAAAAAAATTAAACTTA
*
11434 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAACGCTTAGGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAACGCTT-GGTGAC
* ** * *
11499 TATAGATGGACTTTTCTTGTCAATGAATGTCTTTTTCTTCACATTTCTCAATGTAAACATTCAAA
65 TATAGATGGACTTTTCTTGCCAATGAATAACTTTTTCTTCACGTTTCTCAAGGTAAACATTCAAA
* * * *
11564 TATTATCTGTTTTAACCAAAAATGTAAAAAATTCAACTTAAAATAAATTGA-GAGATTATAAAAC
130 TATAATATATTTTAACCAAAAATGTAAAAAATTCAACTTAAAATCAATT-ATGAGATTATAAAAC
* * *
11628 TATTTAAAACGAGTAATAAGGCTTTCGAAAG-TGGGTGACTGTAGATGAACTTTTCTTGCCAATG
194 CATTTAAAGCGAGTAATAAGGCTTTCGAAAGATGGGTGACTATAGATGAACTTTTCTTGCCAATG
* *
11692 AATGTCTTTTTCTTCATGTTTTTCAATATAGACATTCAAATATTATCTGTTTTGACAAAAAAATG
259 AATG-CTTTTTCTTCATGTTTTTCGATGTAGACATTCAAATATTATCTGTTTT-A-AAAAAAATG
* * * * *
11757 CTAAAAAATTGAACATAAAATCAATTATAAGGTTACAAAACCATTTAAAGCGAGTAAT-AGGGTT
321 -TAAAAAATTGAAC-TAAAATCAATTATGAGATTATAAAATCATTTAAAGCGAGTAATAAGGCTT
* * ** * * *
11821 TACGAATG-CATAGGTTACTATAGATGCACTTTTCTTATCAATGAAT-AGCTTTTTCTTCTTGTT
384 T-CGAA-GACTTAAGCGACTATAAATG-ACTTTTCTTATCAATGAATGA-CTTTTACTTCTTATT
* * * * ** *
11884 TTTTGAGGTAGATATTCAAATATTATCTATTTTAATAAAAAATATAAAAAAATTAAACTTA
445 TTTTGAGGAAAACATTCAATTACAATATATTTTAATAAAAAATATAAAAAAATTAAACTTA
* * * * * *
11945 AAATCAATTATGATATTATAAAATCATTTGAAGCGTGTAATATGGCTTTCAAACGCATTGGTGAC
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAACGC-TTGGTGAC
* * * ** * ** *
12010 TATAGATGGACTTTTCTTGCTAATGAATATCTTTTTCTTTACGTTTCTTGATGTAGGCAATCAAA
65 TATAGATGGACTTTTCTTGCCAATGAATAACTTTTTCTTCACGTTTCTCAAGGTAAACATTCAAA
* * * * *
12075 TATTATTTGTTTTAACCAAAAATGTAAAAAATTCAACTTAAAATTAATTAAGAGATTATAAAACC
130 TATAATATATTTTAACCAAAAATGTAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACC
* * * * *
12140 ATTTAAAGGGAGTAATAAGGCTTTCGAAAGCATGGGTTACTATAGATGCACTTTTCTTGGCAATA
195 ATTTAAAGCGAGTAATAAGGCTTTCGAAAG-ATGGGTGACTATAGATGAACTTTTCTTGCCAATG
* * * * *
12205 AATAGCTTTTTTTTC-TCGTTTCTT-GAGGTAGACATTCTAATCTTATCTGTTTTAATGAAAAAT
259 AAT-GCTTTTTCTTCAT-GTTT-TTCGATGTAGACATTCAAATATTATCTGTTTTAA-AAAAAAT
* * *
12268 ATAAAACAATTTAACTCAAAATCAATTATGAGATTATAAGATCATTTAAAGCGAGTAATAAGGCT
320 GTAAAA-AATTGAACT-AAAATCAATTATGAGATTATAAAATCATTTAAAGCGAGTAATAAGGCT
* * ** * * *
12333 TTTGAAGACTTAAGCGACTATAAAT-AGTCTTTCTTGCCAACGGATGACTTTTGC--CTTACATT
383 TTCGAAGACTTAAGCGACTATAAATGACT-TTTCTTATCAATGAATGACTTTTACTTCTT--ATT
* * * * * * *
12395 TCTTGAGGCAAACATTCAATTACAATGTATTTTAATAAAGAATTTTAAAAAATTTAACTTA
445 TTTTGAGGAAAACATTCAATTACAATATATTTTAATAAAAAATATAAAAAAATTAAACTTA
** * * * *
12456 AAATCAATTATGAGATTATAAAATAATTTAAAGCGAGTAATTA-GCTTTACGAAGGCTTAAGCGA
1 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT-CGAACGCTT-GGTGA
** * * * * *
12520 CGGTACATGGACTTTTCTTGCCAATGGATAACTTTTACTTCATGTTTCTCAAGGTAGACATTCAA
64 CTATAGATGGACTTTTCTTGCCAATGAATAACTTTTTCTTCACGTTTCTCAAGGTAAACATTCAA
* * *
12585 TTACAATATATTTTAACAAAAAATGTAAAACAATTCAACTTAAAATCAATTATGAGATTATAAAA
129 ATATAATATATTTTAACCAAAAATGTAAAA-AATTCAACTTAAAATCAATTATGAGATTATAAAA
* * * * * * *
12650 CTATTTAGAGTGAGTAATGAGGC--T----ATAT---TG--TA-A-ATGGACTTTT-TTAGCTAA
193 CCATTTAAAGCGAGTAATAAGGCTTTCGAAAGATGGGTGACTATAGATGAACTTTTCTT-GCCAA
* * * **
12701 TGAATGACTTTTTTTTCATATTTCTCGATGTAGACATTCAAATATTATCTGTTTTACCTAAAAAT
257 TGAATG-CTTTTTCTTCATGTTTTTCGATGTAGACATTCAAATATTATCTGTTTTA-AAAAAAAT
* * * * * * * *
12766 ATAAGATAATTTAACTTAAGATGAATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGAT
320 GTAA-AAAATTGAAC-TAAAATCAATTATGAGATTATAAAATCATTTAAAGCGAGTAATAAGGCT
* * ** * * *** *
12831 TTCGAAGATTTAAGTGACTATAAATAGACTTTTCTTGCCAATG-GTGACTTTTGCTTCACGTTTC
383 TTCGAAGACTTAAGCGACTATAAAT-GACTTTTCTTATCAATGAATGACTTTTACTTCTTATTTT
* * *
12895 CTGA-GACAGACATTCAATTATAATATATTTTAA-AAAA
447 TTGAGGA-AAACATTCAATTACAATATATTTTAATAAAA
12932 CTATTTAAAG
Statistics
Matches: 1238, Mismatches: 215, Indels: 106
0.79 0.14 0.07
Matches are distributed among these distances:
497 8 0.01
498 178 0.14
499 16 0.01
500 5 0.00
502 1 0.00
505 2 0.00
506 1 0.00
509 4 0.00
510 85 0.07
511 538 0.43
512 195 0.16
513 189 0.15
514 16 0.01
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (505 bp):
AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAACGCTTGGTGACT
ATAGATGGACTTTTCTTGCCAATGAATAACTTTTTCTTCACGTTTCTCAAGGTAAACATTCAAAT
ATAATATATTTTAACCAAAAATGTAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCA
TTTAAAGCGAGTAATAAGGCTTTCGAAAGATGGGTGACTATAGATGAACTTTTCTTGCCAATGAA
TGCTTTTTCTTCATGTTTTTCGATGTAGACATTCAAATATTATCTGTTTTAAAAAAAATGTAAAA
AATTGAACTAAAATCAATTATGAGATTATAAAATCATTTAAAGCGAGTAATAAGGCTTTCGAAGA
CTTAAGCGACTATAAATGACTTTTCTTATCAATGAATGACTTTTACTTCTTATTTTTTGAGGAAA
ACATTCAATTACAATATATTTTAATAAAAAATATAAAAAAATTAAACTTA
Found at i:12155 original size:341 final size:340
Alignment explanation
Indices: 10921--12911 Score: 1422
Period size: 341 Copynumber: 5.9 Consensus size: 340
10911 NNNNNNNNNN
* * *
10921 AAATCAATTATGAGATTATAAAA-CTATTTAAAACGAGTAATAAGGCTTTGAAAGACTTGATCGA
1 AAATCAATTATGAGATTATAAAATC-ATTTAAAGCGAGTAATAAGGCTTTCAAAGA-TTGGT-GA
* * * * * * * *** * * * * * *
10985 TTATAAATGAACTTTTCTTGCCAATCAATAACTTTTGCTTTGTGTTTCCTGAGGCAAACATTCAA
63 CTATAGATGGACTTTTCTTGCTAATGAATATCTTTTTCTTCACGTTTCTTAATGTAGACAATCAA
* * * * * * *
11050 TTATAATATATTTTAACAAAAAGTGAAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAA
128 ATATTATATGTTTTAACAAAAAATGATAAAAAATTCAACATAAAATCAATTAAGAGATTATAAAA
* * * * *
11115 CCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAGATGGACTTTTCTTGCCAA
193 CCATTTAAAGCGAGTAATAAGGCTTTCGAAAGCATAGGTGACTATAGATGCACTTTTCTTGTCAA
* * * **
11180 TGAATGACTTTCTCTCCACATTT-TCTGATGTATG-CATTCAAAGGTTATCTGTTTTAGA-AAAA
258 TGAATGACTTTTTCTTCACATTTCT-TGAGGTA-GACATTCAAATATTATCTGTTTTA-ATAAAA
* * * *
11242 AGTGTAAGAAAATTGAACTTA
320 AATATAAAAAAATTAAACTTA
** * * * * * * *
11263 AAAAGAACTATGAGATTATAAAATCATTTAAAGTGAGTAATAAGGCCTTCGAAGACTTAAGCGAT
1 AAATCAATTATGAGATTATAAAATCATTTAAAGCGAGTAATAAGGCTTTCAAAGA-TT-GGTGAC
* * * * ** * *
11328 TATAAATGGACTTTTCTT-ATCAATGAATGA-CTTTTACTTCACATTTC-CCA-GGAAACACATT
64 TATAGATGGACTTTTCTTGCT-AATGAAT-ATCTTTTTCTTCACGTTTCTTAATGTAGACA-A-T
* *** * *
11389 CAATTGCAATATATTTTAACAAAAAAT-ATAAAAAAATTCAACATAAAATCAATTATGAGATTAT
125 CAAATATTATATGTTTTAACAAAAAATGAT-AAAAAATTCAACATAAAATCAATTAAGAGATTAT
* * * *
11453 AAAACCATTTAAAGCGAGTAATAAGGCTTTTGAACGCTTAGGTGACTATAGATGGACTTTTCTTG
189 AAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAAGCATAGGTGACTATAGATGCACTTTTCTTG
* ** * * **
11518 TCAATGAATGTCTTTTTCTTCACATTTCTCAATGTAAACATTCAAATATTATCTGTTTTAACCAA
254 TCAATGAATGACTTTTTCTTCACATTTCTTGAGGTAGACATTCAAATATTATCTGTTTTAATAAA
* *
11583 AAATGT-AAAAAATTCAACTTA
319 AAATATAAAAAAATTAAACTTA
* * *
11604 AAATAAATTGA-GAGATTATAAAA-CTATTTAAAACGAGTAATAAGGCTTTCGAAAG-TGGGTGA
1 AAATCAATT-ATGAGATTATAAAATC-ATTTAAAGCGAGTAATAAGGCTTTC-AAAGATTGGTGA
* * * * * * *
11666 CTGTAGATGAACTTTTCTTGCCAATGAATGTCTTTTTCTTCATGTTT-TTCAATATAGACATTCA
63 CTATAGATGGACTTTTCTTGCTAATGAATATCTTTTTCTTCACGTTTCTT-AATGTAGACAATCA
* * * * * *
11730 AATATTATCTGTTTTGACAAAAAAATGCTAAAAAATTGAACATAAAATCAATTATA-AGGTTACA
127 AATATTATATGTTTTAAC-AAAAAATGATAAAAAATTCAACATAAAATCAATTA-AGAGATTATA
* * * *
11794 AAACCATTTAAAGCGAGTAAT-AGGGTTTACGAATGCATAGGTTACTATAGATGCACTTTTCTTA
190 AAACCATTTAAAGCGAGTAATAAGGCTTT-CGAAAGCATAGGTGACTATAGATGCACTTTTCTTG
*** * * *
11858 TCAATGAAT-AGCTTTTTCTTCTTGTTTTTTGAGGTAGATATTCAAATATTATCTATTTTAATAA
254 TCAATGAATGA-CTTTTTCTTCACATTTCTTGAGGTAGACATTCAAATATTATCTGTTTTAATAA
11922 AAAATATAAAAAAATTAAACTTA
318 AAAATATAAAAAAATTAAACTTA
* * * *
11945 AAATCAATTATGATATTATAAAATCATTTGAAGCGTGTAATATGGCTTTCAAACGCATTGGTGAC
1 AAATCAATTATGAGATTATAAAATCATTTAAAGCGAGTAATAAGGCTTTCAAA-G-ATTGGTGAC
* * *
12010 TATAGATGGACTTTTCTTGCTAATGAATATCTTTTTCTTTACGTTTCTTGATGTAGGCAATCAAA
64 TATAGATGGACTTTTCTTGCTAATGAATATCTTTTTCTTCACGTTTCTTAATGTAGACAATCAAA
* * * *
12075 TATTATTTGTTTTAACCAAAAATG-TAAAAAATTCAACTTAAAATTAATTAAGAGATTATAAAAC
129 TATTATATGTTTTAACAAAAAATGATAAAAAATTCAACATAAAATCAATTAAGAGATTATAAAAC
* * * *
12139 CATTTAAAGGGAGTAATAAGGCTTTCGAAAGCATGGGTTACTATAGATGCACTTTTCTTGGCAAT
194 CATTTAAAGCGAGTAATAAGGCTTTCGAAAGCATAGGTGACTATAGATGCACTTTTCTTGTCAAT
* * * * * * *
12204 AAAT-AGCTTTTTTTTCTCGTTTCTTGAGGTAGACATTCTAATCTTATCTGTTTTAATGAAAAAT
259 GAATGA-CTTTTTCTTCACATTTCTTGAGGTAGACATTCAAATATTATCTGTTTTAATAAAAAAT
* * *
12268 ATAAAACAATTTAACTCA
323 ATAAAAAAATTAAACTTA
* ** * *
12286 AAATCAATTATGAGATTATAAGATCATTTAAAGCGAGTAATAAGGCTTTTGAAGACTTAAGCGAC
1 AAATCAATTATGAGATTATAAAATCATTTAAAGCGAGTAATAAGGCTTTCAAAGA-TT-GGTGAC
* * * * * * * * * * * * *
12351 TATAAATAGTC-TTTCTTGCCAACGGATGA-CTTTTGCCTT-ACATTTCTTGAGGCAAACATTCA
64 TATAGATGGACTTTTCTTGCTAATGAAT-ATCTTTT-TCTTCACGTTTCTTAATGTAGACAATCA
* ** * * * * ** * * *
12413 ATTACAATGTATTTTAATAAAGAATTTTAAAAAATTTAACTTAAAATCAATTATGAGATTATAAA
127 AATATTATATGTTTTAACAAAAAATGATAAAAAATTCAACATAAAATCAATTAAGAGATTATAAA
** * * * * * ** * * *
12478 ATAATTTAAAGCGAGTAATTA-GCTTTACGAAGGCTTAAGCGACGGTACATGGACTTTTCTTGCC
192 ACCATTTAAAGCGAGTAATAAGGCTTT-CGAAAGCATAGGTGACTATAGATGCACTTTTCTTGTC
* * * ** ** * ** * * *
12542 AATGGATAACTTTTACTTCATGTTTCTCAAGGTAGACATTCAATTACAATATATTTTAACAAAAA
256 AATGAATGACTTTTTCTTCACATTTCTTGAGGTAGACATTCAAATATTATCTGTTTTAATAAAAA
* * *
12607 ATGTAAAACAATTCAACTTA
321 ATATAAAAAAATTAAACTTA
* * * *
12627 AAATCAATTATGAGATTATAAAA-CTATTTAGAGTGAGTAATGAGGC--T---ATA-T--TG--T
1 AAATCAATTATGAGATTATAAAATC-ATTTAAAGCGAGTAATAAGGCTTTCAAAGATTGGTGACT
* ** ** *
12681 A-A-ATGGACTTTT-TTAGCTAATGAATGA-CTTTTTTTTCATATTTCTCGATGTAGACATTCAA
65 ATAGATGGACTTTTCTT-GCTAATGAAT-ATCTTTTTCTTCACGTTTCTTAATGTAGACAATCAA
* * * * * * * * *
12742 ATATTATCTGTTTTACCTAAAAAT-ATAAGATAATTTAACTTAAGATGAATTATGAGATTATAAA
128 ATATTATATGTTTTAACAAAAAATGATAA-AAAATTCAACATAAAATCAATTAAGAGATTATAAA
* * * *
12806 ACCATTTAAAGCAAGTAATAAGGATTTCG-AAG-ATTTAAGTGACTATAAATAG-ACTTTTCTTG
192 ACCATTTAAAGCGAGTAATAAGGCTTTCGAAAGCA--TAGGTGACTATAGAT-GCACTTTTCTTG
* * * * * **
12868 CCAATG-GTGACTTTTGCTTCACGTTTCCTGAGACAGACATTCAA
254 TCAATGAATGACTTTTTCTTCACATTTCTTGAGGTAGACATTCAA
12912 TTATAATATA
Statistics
Matches: 1331, Mismatches: 270, Indels: 111
0.78 0.16 0.06
Matches are distributed among these distances:
327 42 0.03
328 130 0.10
329 7 0.01
331 1 0.00
334 1 0.00
336 2 0.00
339 60 0.05
340 218 0.16
341 514 0.39
342 278 0.21
343 76 0.06
344 2 0.00
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.36
Consensus pattern (340 bp):
AAATCAATTATGAGATTATAAAATCATTTAAAGCGAGTAATAAGGCTTTCAAAGATTGGTGACTA
TAGATGGACTTTTCTTGCTAATGAATATCTTTTTCTTCACGTTTCTTAATGTAGACAATCAAATA
TTATATGTTTTAACAAAAAATGATAAAAAATTCAACATAAAATCAATTAAGAGATTATAAAACCA
TTTAAAGCGAGTAATAAGGCTTTCGAAAGCATAGGTGACTATAGATGCACTTTTCTTGTCAATGA
ATGACTTTTTCTTCACATTTCTTGAGGTAGACATTCAAATATTATCTGTTTTAATAAAAAATATA
AAAAAATTAAACTTA
Found at i:12736 original size:157 final size:157
Alignment explanation
Indices: 12526--12813 Score: 362
Period size: 157 Copynumber: 1.8 Consensus size: 157
12516 GCGACGGTAC
* * *
12526 ATGGACTTTTCTTGCCAATGGATAACTTTTACTTCATGTTTCTCAAGGTAGACATTCAATTACAA
1 ATGGACTTTTCTTGCCAATGAATAACTTTTACTTCATATTTCTCAAGGTAGACATTCAAATACAA
* *
12591 TATATTTTAACAAAAAATGTAAAACAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTT
66 TATATTTTAACAAAAAATATAAAACAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTT
12656 AGAGTGAGTAATGAGGCTATATTGTAA
131 AGAGTGAGTAATGAGGCTATATTGTAA
* * ** * * **
12683 ATGGACTTTT-TTAGCTAATGAATGACTTTTTTTTCATATTTCTCGATGTAGACATTCAAATATT
1 ATGGACTTTTCTT-GCCAATGAATAACTTTTACTTCATATTTCTCAAGGTAGACATTCAAATACA
* * * * * * * * *
12747 ATCTGTTTTACCTAAAAATATAAGATAATTTAACTTAAGATGAATTATGAGATTATAAAACCATT
65 ATATATTTTAACAAAAAATATAAAACAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
12812 TA
130 TA
12814 AAGCAAGTAA
Statistics
Matches: 108, Mismatches: 22, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
156 2 0.02
157 106 0.98
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (157 bp):
ATGGACTTTTCTTGCCAATGAATAACTTTTACTTCATATTTCTCAAGGTAGACATTCAAATACAA
TATATTTTAACAAAAAATATAAAACAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTT
AGAGTGAGTAATGAGGCTATATTGTAA
Found at i:13735 original size:341 final size:340
Alignment explanation
Indices: 13107--15554 Score: 857
Period size: 341 Copynumber: 7.2 Consensus size: 340
13097 NNNNNAATAA
* * ** *
13107 AAAATATAAAAAAATTCAACTTAAAATTAATTATGGGATTATAAAATCATTTAAGGCGAGTAATG
1 AAAATATAAAAAAATTCAACTTAAAATCAATTATCGGATTATAAAATCATTTAAAACGAGTAATA
*
13172 AGGATTTCGAAGACTTAAGCTACTATAAATGGACTTTCTTGCTAATGGATGACTTTTGCCTCACG
66 AGGATTTCGAAGACTTAAGCGACTATAAATGGACTTTCTTGCTAATGGATGACTTTTGCCTCACG
* * * **********
13237 TTTTCTGCAGAAGACATTCAATTGTAATATATTTTAACAAAAAATGTAAAAAAATNNNNNNNNNN
131 TTTTCCGCAGAAGACATTCAATTCTAAAATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAA
* *
13302 ATCAATTATGAGATTAAAAAACTATTTAAAGCAAGTAATAAAGCTTTCGAATGCATGGGTGAGTA
196 ATCAATTATGAGATTAAAAAACCATTTAAAGCAAGTAATAAAGCTTTCGAATGCATGGGTGACTA
* * * *
13367 TAGATGGACTTTTCTTGCCACTGAATGGTTTTTTCTTCATGTTTCCCTATGTAGACATTCAAATA
261 TAGATCGACTTTTCTTACCAATGAATGGCTTTTTCTTCATGTTTCCCTATGTAGACATTCAAATA
13432 TTATCTATTTTTACC
326 TTATCTATTTTTACC
* * * *
13447 AAAATGTAAAAAAATTTAACTTAAAATCAATTATCTGATTATAAAATCATTTAAAACGAGTAGTA
1 AAAATATAAAAAAATTCAACTTAAAATCAATTATCGGATTATAAAATCATTTAAAACGAGTAATA
* * * *
13512 AGGATTTCGAAGACTTAAGGGACTATAACTGGACTTTTTCTGCTAATGGATGACTTTTGCCTCAT
66 AGGATTTCGAAGACTTAAGCGACTATAAATGGACTTTCT-TGCTAATGGATGACTTTTGCCTCAC
* * * *
13577 G-TTTCACG-AGGCAGACATTCAATTCTAAAATATTTTAATAGAAAATGTAAAAAATTTCAACTT
130 GTTTTC-CGCA-GAAGACATTCAATTCTAAAATATTTTAACAAAAAATGTAAAAAAATTCAACTT
* ********** ** *
13640 AAAATTAATTNNNNNNNNNNAAAACCATTTAAAGTGAGTAATAAGGCTTTC-AGATGCATGGGTG
193 AAAATCAATTATGAGATTAAAAAACCATTTAAAGCAAGTAATAAAGCTTTCGA-ATGCATGGGTG
* * * * *
13704 ACTATATATCGACTTTTCTTACCAATGAATGGCTTTTTCTTC-TCG-TTCTTCAAGGTAAACA-T
257 ACTATAGATCGACTTTTCTTACCAATGAATGGCTTTTTCTTCAT-GTTTC-CCTATGTAGACATT
* * *
13766 CAAATATTATCTGTTTTAACAA
320 CAAATATTATCTATTTTTAC-C
********** *
13788 AAAATATAAAAAAATTCAACTTNNNNNNNNNNAT-GAGATTATAAAACCATTTAAAGA-GAGTAA
1 AAAATATAAAAAAATTCAACTTAAAATCAATTATCG-GATTATAAAATCATTTAAA-ACGAGTAA
* * ** * * ** * * * * ** ***
13851 TAAAGCTTTTAAACG-CATGAGTAACTAT-AGTGGACTTTTCTTACCAATGAATGTGTTTTTATT
64 TAAGGATTTCGAA-GACTTAAGCGACTATAAATGGAC-TTTCTTGCTAATGGATGACTTTTGCCT
** * * * * ** * * *
13914 CACGTTTCTTAATG-TGAA-A-ATTCAAATATTATCTGTTTTAACTAAAAATAT-AAAAAATATC
127 CACG-TT-TT-CCGCAGAAGACATTCAATTCTAAAATATTTTAACAAAAAATGTAAAAAAAT-TC
* * * * * * * *
13975 AACTTAAAATCAAATAAGAGATTATAAAACTATTTAAAGCGAGTAATAAGGC-TTCGAACGCATA
188 AACTTAAAATCAATTATGAGATTAAAAAACCATTTAAAGCAAGTAATAAAGCTTTCGAATGCATG
** * * ** * * ** * * *
14039 AATGACTATAGATGGACTTCTCTTGTCAATAAATGGCTTTTTCTTCCTGTTTTTCAAGGTAGGCA
253 GGTGACTATAGATCGACTTTTCTTACCAATGAATGGCTTTTTCTTCATGTTTCCCTATGTAGACA
* *
14104 TTCAAACATTATCTATTTTAATA-A
318 TTCAAATATTATCTATTTT--TACC
********** * * *
14128 AAAATAT-AAAAANNNNNNNNNNAAATCAATTAT-GAGATTATAAAATTATTTAAAGCGAGTCAT
1 AAAATATAAAAAAATTCAACTTAAAATCAATTATCG-GATTATAAAATCATTTAAAACGAGTAAT
* * * ** * * * ** * * *
14191 AAAG-CTTCGAATG-CATGCGTGACTATAGATGGACCTTTCTT-ATCAATAAAT-ATTTTTTTCT
65 AAGGATTTCGAA-GACTTAAGCGACTATAAATGGA-CTTTCTTGCT-AATGGATGA-CTTTTGCC
* * * * ** * * * * *
14252 TCACG-TTTCC-CTATGTAA-ACAATCAAATATTATTTGTTTTTACCAAAAATATAAAAAAATTT
126 TCACGTTTTCCGC-A-G-AAGACATTCAATTCTAAAATATTTTAACAAAAAATGTAAAAAAATTC
********** * * * * * * *
14314 AACTTNNNNNNNNNNATGTGATTATAAAACCATTTAAAGCAAGTAATAACGATTT-TAAAGACTT
188 AACTTAAAATCAATTATGAGATTAAAAAACCATTTAAAGCAAGTAATAAAGCTTTCGAATG-CAT
** * * * * * * * ** *
14378 AAGTGACTATAAATGGAC-TTTCCTACCAATGGATGACTTTTACCTCATGTTTCCAGA-GATAAA
252 GGGTGACTATAGATCGACTTTTCTTACCAATGAATGGCTTTTTCTTCATGTTTCCCTATG-TAGA
* * ** * *
14441 CATTCAATTATAAAATATTTTAATGC
316 CATTCAAATATTATCTATTTTTA-CC
* * * * * * *
14467 AAAATGTAAAAAATTTTAACTTTAAATCAATTAT-GAGATTATAAAACCATTTAAAGCGCGTAAT
1 AAAATATAAAAAAATTCAACTTAAAATCAATTATCG-GATTATAAAATCATTTAAAACGAGTAAT
* ** * * ** * * * *
14531 AAGGCTTTCGAATG--TATGGGTGACTATAGATCTACTTTTTTTTG-TAAATGAATGGCTTTTTC
65 AAGGATTTCGAA-GACT-TAAGCGACTATAAATGGAC--TTTCTTGCT-AATGGATGACTTTTGC
* * ** * ** * *
14593 TTCTCGTTTTTTG-AGATAGACATTCAA--ATATTATCTGTTTAACAAAAAACGTAAAAAAATTC
125 CTCACGTTTTCCGCAGA-AGACATTCAATTCTAAAATAT-TTTAACAAAAAATGTAAAAAAATTC
********** * * * *
14655 AACTTAAAATCANNNNNNNNNNTATAAAACCATTTAAAGCGAGTAATTAAA-CTTTCAAACGCAT
188 AACTTAAAATCAATTATGAGATTAAAAAACCATTTAAAGCAAGTAA-TAAAGCTTTCGAATGCAT
* * * * * ** *
14719 GAGTGACTATAG-TGGACTTTTCTTGCCAATAAATGTCTTTTTCTTCAAT-TTT-TTTGATGTAA
252 GGGTGACTATAGATCGACTTTTCTTACCAATGAATGGCTTTTTCTTC-ATGTTTCCCT-ATGTAG
* * * * *
14781 AAATTCAAATATTATCTGTTCTAACT
315 ACATTCAAATATTATCTATTTTTACC
* * * * *
14807 AAAA-ATGTAAAATATATCAACTTAAAATCAAGTA-GGAGATTATAAAA-CGATTTAAAGCGAGT
1 AAAATAT-AAAAAAAT-TCAACTTAAAATCAATTATCG-GATTATAAAATC-ATTTAAAACGAGT
* * ** * * * * * * *
14869 AATAAGG-CTTCGAATG-CATGGGTGACTATAGATGGAGGTTTCTTACCAATGAATGGA-TTTTT
62 AATAAGGATTTCGAA-GACTTAAGCGACTATAAATGGA-CTTTCTTGCTAATGGAT-GACTTTTG
* ** ** * * * * * ** * * **
14931 CTTCTTGTTTT-CTAAGGTAGGCATTCAAATATTACCTGTTTCAATGAAAAATGTAAAAAAATTC
124 CCTCACGTTTTCCGCA-GAAGACATTCAATTCTAAAATATTTTAACAAAAAATGTAAAAAAATTC
********** ** * * * * *
14995 AACTTAANNNNNNNNNNGAGATTATGAAACTATTTAAAGCGAGTCATAAGGCTTTCGAATACATG
188 AACTTAAAATCAATTATGAGATTAAAAAACCATTTAAAGCAAGTAATAAAGCTTTCGAATGCATG
* * * * * **
15060 AGTGACTATAGATAGTCTTTTCTTGCCAATGAATGGTTTTTTCTTCCCGTTTCCCTATGTAGACA
253 GGTGACTATAGATCGACTTTTCTTACCAATGAATGGCTTTTTCTTCATGTTTCCCTATGTAGACA
*
15125 TTC-AATATTATCTGTTTTTACC
318 TTCAAATATTATCTATTTTTACC
* ** * * **
15147 AAAAATGTAAAAAAATTCAACTTAAAATCAATTATATGATTTTAAAA-CTATTTAAAGCGAGTCG
1 -AAAATATAAAAAAATTCAACTTAAAATCAATTATCGGATTATAAAATC-ATTTAAAACGAGTAA
* * * * * * *
15211 CAAGGATTTTGAAGATTTAAGGGACTATAACTGAACTTT-TT-CTATCAATGGATGACTTTAGCC
64 TAAGGATTTCGAAGACTTAAGCGACTATAAATGGACTTTCTTGC--T-AATGGATGACTTTTGCC
* * * * * * * * *
15274 TCATG-TTTCCTGAAGCAGACATTCATTTATAAAATATTGTAATAGAAAATGTAAAAAATTTCAA
126 TCACGTTTTCC-GCAGAAGACATTCAATTCTAAAATATTTTAACAAAAAATGTAAAAAAATTCAA
* * *
15338 CTCAAAATCAATTATGAGATTATAAAACCATTTAAAGGAAGTAAT-AAGACTTTCGAATGCATGG
190 CTTAAAATCAATTATGAGATTAAAAAACCATTTAAAGCAAGTAATAAAG-CTTTCGAATGCATGG
* * **********
15402 GTCACTATAGATCGACTTTTCTTACCAATGAATGACTTTTTCTTC-TCGTNNNNNNNNNNAGACA
254 GTGACTATAGATCGACTTTTCTTACCAATGAATGGCTTTTTCTTCAT-GTTTCCCTATGTAGACA
* * *
15466 TTCAAATATTATCTGTTTTCACAA
318 TTCAAATATTATCTATTTTTAC-C
* * * *
15490 AAAATGTAAAAAAATTAAACTT-AAATCAATTATCAGATTATAAAACCATTTAAAGA-GAGTAAT
1 AAAATATAAAAAAATTCAACTTAAAATCAATTATCGGATTATAAAATCATTTAAA-ACGAGTAAT
15553 AA
65 AA
15555 AGCGTTTAAA
Statistics
Matches: 1563, Mismatches: 456, Indels: 177
0.71 0.21 0.08
Matches are distributed among these distances:
336 2 0.00
337 3 0.00
338 21 0.01
339 287 0.18
340 501 0.32
341 654 0.42
342 89 0.06
343 6 0.00
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.34
Consensus pattern (340 bp):
AAAATATAAAAAAATTCAACTTAAAATCAATTATCGGATTATAAAATCATTTAAAACGAGTAATA
AGGATTTCGAAGACTTAAGCGACTATAAATGGACTTTCTTGCTAATGGATGACTTTTGCCTCACG
TTTTCCGCAGAAGACATTCAATTCTAAAATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAA
ATCAATTATGAGATTAAAAAACCATTTAAAGCAAGTAATAAAGCTTTCGAATGCATGGGTGACTA
TAGATCGACTTTTCTTACCAATGAATGGCTTTTTCTTCATGTTTCCCTATGTAGACATTCAAATA
TTATCTATTTTTACC
Found at i:17319 original size:170 final size:170
Alignment explanation
Indices: 16769--20834 Score: 2751
Period size: 170 Copynumber: 23.9 Consensus size: 170
16759 NNNNNNATTC
* ** *
16769 AAAGCAAGTAATAAGGCTTTCGAACACATGGGTGACTATAGATGGACTTTTCTTACCAATAAATG
1 AAAGCGAGTAATAAGGCTTTCGAATGCATGGGTGACTATA-ATGGACTTTTCTTACCAATGAATG
* * * ** * * *
16834 TCTTTTTTTTTAATGTTTCTCAATGTAGACATTCAAATATTATCTATTTCAACCAAAAATGTAAA
65 AC-TTTTTCTTCATGTTTCTTGAGGTAGACATTCAAATATTATCTATTTTAACAAAAAATGTAAA
* * *
16899 AAAATTCAACTTAAAATCAATTAAGAGTTTATAAAATTATTT
129 AAAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTT
* * **
16941 AAAGCGAGTAATAAGGCTTTCGAATGCATAGGTTACTATAGATGGACTTTTCTTAAGAATGAATG
1 AAAGCGAGTAATAAGGCTTTCGAATGCATGGGTGACTATA-ATGGACTTTTCTTACCAATGAATG
* * * * * * * * * ** *
17006 ACTTATCCTTCCTATTTTTTAAGGTAAACATTCAAATATTGTCTGTTTTAACAGTAAATGAAAAA
65 ACTTTTTCTTCATGTTTCTTGAGGTAGACATTCAAATATTATCTATTTTAACAAAAAATGTAAAA
* * *
17071 AAATTTAACTTAAAATCAATTATGTGATTATAAAACCATTT
130 AAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTT
* * * * * ** * *
17112 AAAGAGTGTAATAACGATTTCGAA-GACTTAAGTGACTATTAATGGACTTTT-GTACCAATGGAT
1 AAAGCGAGTAATAAGGCTTTCGAATG-CATGGGTGACTA-TAATGGACTTTTCTTACCAATGAAT
* * * * ** ** * ** *
17175 GACTTTTCCCTCATGTTTCTTGAGGCAGAGATTCAGTTATTAAATATTTTAATAGGAAATGTAAG
64 GACTTTTTCTTCATGTTTCTTGAGGTAGACATTCAAATATTATCTATTTTAACAAAAAATGTAAA
* * *
17240 AAATTTCAACTTAAAATTAATTATGAGATTATAAAAGTATTT
129 AAAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTT
* ** * *
17282 AAAGCGAGTAATAAGGTTTTCGAATGCATGGGTGACTATAGATAAACTTTTCTTTCTAATGAATG
1 AAAGCGAGTAATAAGGCTTTCGAATGCATGGGTGACTATA-ATGGACTTTTCTTACCAATGAATG
* * * * * * * * *
17347 GCCTTTTCTTCCTGTTTCCTT-ATGTAGATATTCAAATATTACCTGTTTTAACAAGAAATGTAAC
65 ACTTTTTCTTCATGTTT-CTTGAGGTAGACATTCAAATATTATCTATTTTAACAAAAAATGTAAA
** * *
17411 AAAATTTGAGTTAAAATCAATTGA-GAGATTAAAAAAGC-ATTT
129 AAAATTCAACTTAAAATCAATT-ATGAGATTATAAAA-CTATTT
* * ** * * * * *
17453 CAAGCGAGTAATAAAGCTTTAAAACGCATGAGTGACTATAGTAGACTTTT-TTAGACAATGAATA
1 AAAGCGAGTAATAAGGCTTTCGAATGCATGGGTGACTATAATGGACTTTTCTTA-CCAATGAAT-
* * * * * * * * *
17517 TAATTTTT-TTCACGTTTTCCT-ATGTAAAAATTCAAATATTATCTGTTTTAACAAGAAATGTAA
64 GACTTTTTCTTCATG-TTTCTTGAGGTAGACATTCAAATATTATCTATTTTAACAAAAAATGTAA
*
17580 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTT
128 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTT
* *
17623 AAAGCGAGTAATAAGGCTTT-AAATACATGGGTGACTATAGATGGACTTTTCTTACCAATGAATG
1 AAAGCGAGTAATAAGGCTTTCGAATGCATGGGTGACTATA-ATGGACTTTTCTTACCAATGAATG
* * * * ** * **
17687 CCTTTTTCTTCTTTTTTTTTTTGAGGCCGACATTCAAATATTATCT-GTTTAATGAAAAATGTAA
65 ACTTTTTCTTC--ATGTTTCTTGAGGTAGACATTCAAATATTATCTATTTTAACAAAAAATGTAA
* * * *
17751 AAAAATTCAGCTTAAAATCAGTTATGAGAATGTAAAACTATTT
128 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTT
* * ** * * *
17794 AAAGCGAGTAAT-AGGCTTTCAAAAGCATGGGCAACTAGAGATAGACTTTTCTTACCAATGTAT-
1 AAAGCGAGTAATAAGGCTTTCGAATGCATGGGTGACTATA-ATGGACTTTTCTTACCAATGAATG
* * * * * *
17857 ATCTTTTTCTTCATGTTT-TCTAATGTAGACATTCAAATATAATCTATTTCAACCAAAAATATAA
65 A-CTTTTTCTTCATGTTTCT-TGAGGTAGACATTCAAATATTATCTATTTTAACAAAAAATGTAA
* *
17921 AAAAATTCAACTTAAAATCAATTAAGAGTTTATAAAA-TCATTT
128 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACT-ATTT
* * * * * *
17964 AAAGAGAGTAATAAGGCTTTTGAACT-CATAGGTGACTATAAATAGATTTTTCTTGA-GAATGAA
1 AAAGCGAGTAATAAGGCTTTCGAA-TGCATGGGTGACTAT-AATGGACTTTTCTT-ACCAATGAA
* * * * **
18027 TGGCTTTTTCTTCCTGTTTTTTGAGGTGGACATTCAAATATTATCTATTTTAACAAAAAATAAAA
63 TGACTTTTTCTTCATGTTTCTTGAGGTAGACATTCAAATATTATCTATTTTAACAAAAAATGTAA
** * * *********
18092 AAAAATAAAACTTAAAATCAATTTTGTGNNNNNNNNNNC-ATTT
128 AAAAATTCAACTTAAAATCAATTATGAG-ATTATAAAACTATTT
* * * ** * * *
18135 AAAGCGAGTAATAAGGATTTC-AAAGACTTAAGTGACTATAAATAGAC-TTTCCTACCAATGGAT
1 AAAGCGAGTAATAAGGCTTTCGAATG-CATGGGTGACTAT-AATGGACTTTTCTTACCAATGAAT
* * * * * * ** * * *
18198 GACTTTTGCCTCACAT-TTTC-TCAGGCAGACATTCAATTATAAAATATTTTAATAGAAAAGGTA
64 GACTTTT-TCT-TCATGTTTCTTGAGGTAGACATTCAAATATTATCTATTTTAACAAAAAATGTA
* * *
18261 AAATATTTCAACTTAAAATTAATTATGAGATTATAAAACTATTT
127 AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTT
* * * * * * * * *
18305 AAGGCGCGCAATAAGGCTTTCGAATACATGAGTGACTATAACGGACTTCTCTTATCAATGAATGT
1 AAAGCGAGTAATAAGGCTTTCGAATGCATGGGTGACTATAATGGACTTTTCTTACCAATGAATGA
* ** *
18370 CTTTTTCTTTATGTTT-TTAGAGGTAGACATTCAAATATTATCTGCTTTAATAAAAAATGTAAAA
66 CTTTTTCTTCATGTTTCTT-GAGGTAGACATTCAAATATTATCTATTTTAACAAAAAATGTAAAA
18434 AAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTT
130 AAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTT
* * * * * * * * * *
18475 AAAGCGAGCAATAAAGCTTTCAAACGCATGAGTGACTATAGTGAACTTTTCTTGCTAGTGAAT-A
1 AAAGCGAGTAATAAGGCTTTCGAATGCATGGGTGACTATAATGGACTTTTCTTACCAATGAATGA
* * * * * * *
18539 TCTTTTTCTTCACGTTTCCCT-ATGTAAAAATTCAAATAATT-TTTATTTTAACTAAAAATGTAA
66 -CTTTTTCTTCATGTTT-CTTGAGGTAGACATTCAAAT-ATTATCTATTTTAACAAAAAATGTAA
* * * * * *
18602 AAAAAATCAACTTAAAATCAAATAAGAGATTATAAGACCATAT
128 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTT
* * * * **
18645 AAAGCGAGTAATAAGGC-TTCAAACGCATGGGTGATTATAGATGGAGTTTTCTTGTCAATGAATG
1 AAAGCGAGTAATAAGGCTTTCGAATGCATGGGTGACTATA-ATGGACTTTTCTTACCAATGAATG
* ** * * * * * *
18709 CCTTTTTCTTTTTATTTTTTGAGGTAGATATTCAAATATTATCTGTTTTAATAAAAAATATAAAA
65 ACTTTTTCTTCATGTTTCTTGAGGTAGACATTCAAATATTATCTATTTTAACAAAAAATGTAAAA
* * *
18774 AAATTCAACTT-AAATGAATTATGAGATTATAAAACCATTC
130 AAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTT
* * * * *
18814 AAAGCGAGTAATAAGGCTTTCGAAAGCATAGGCGGCTGA-AGATGGACTTTTCTTCCCAATGAAT
1 AAAGCGAGTAATAAGGCTTTCGAATGCATGGGTGACT-ATA-ATGGACTTTTCTTACCAATGAAT
* * * ** * * * *
18878 -ATCTTTTTCTTCACGTTTCCTAATATAAATATTCAAATATTATCTGTTTTAACCAAAAATGTAA
64 GA-CTTTTTCTTCATGTTTCTTGAGGTAGACATTCAAATATTATCTATTTTAACAAAAAATGTAA
* * *
18942 AAAAATTTAACTTAAATTCAATTATGTGATTATAAAACTATTT
128 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTT
* * * * ** * * * *
18985 AAAGCGAGTAATAAGGATTT-TAAAGACTTAAGCGACTATAAATGGATGTTTTC-TAGCAATGGA
1 AAAGCGAGTAATAAGGCTTTCGAATG-CATGGGTGACTAT-AATGGA-CTTTTCTTACCAATGAA
* * * * * * * * ** **
19048 TGACTTTTGCCTCACGTTTCCCTAAGCATAG--ATTCAATTATAAAATATTTTAACAGGAAATGT
63 TGACTTTTTCTTCATGTTT-CTTGAG-GTAGACATTCAAATATTATCTATTTTAACAAAAAATGT
* * *
19111 AAGAAATTTCAACTTAAAATCAATTATGAGATTATAAAAGTATTT
126 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTT
* * * * *
19156 AAAACGAGTAATAAGACTTTCGAATGCATGGGTGACTATAGATCGACATTTCTTTA-TAATGAAT
1 AAAGCGAGTAATAAGGCTTTCGAATGCATGGGTGACTATA-ATGGACTTTTC-TTACCAATGAAT
* * * * * *
19220 -AGCTTTTTCTTC-TCGCTTCCCT-ATGTAGACATTCAAATATTACCTGTTTTAACAAGAAATGT
64 GA-CTTTTTCTTCAT-G-TTTCTTGAGGTAGACATTCAAATATTATCTATTTTAACAAAAAATGT
* * *
19282 AAAAAAAATTCAAGTGAATATCAATTATGAGATTATAAAAGC-ATTT
126 -AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAA-CTATTT
* * * * * * * * * **
19328 TATGCAAGTAATAAAGCTTTCAAATGCATGAGTGACTATAGTGGACTTTTTTTGCTGATGAATTG
1 AAAGCGAGTAATAAGGCTTTCGAATGCATGGGTGACTATAATGGACTTTTCTTACCAATGAA-TG
* * * * * * * *
19393 -C-TTTTCTTCACG-TTCTCGATGTAAACATTTAAATACTATCTATTTTAATAAGAAATGTAAAA
65 ACTTTTTCTTCATGTTTCTTGAGGTAGACATTCAAATATTATCTATTTTAACAAAAAATGTAAAA
* * * *
19455 AAATTTAACTT---A--AATTATAAGGTTATAAAACCATTT
130 AAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTT
* *
19491 AAAGTGAGTAATAAGGC-TTCGAACGCATGGGTGACTATAGATGGACTTTTCTTACCAATGAATG
1 AAAGCGAGTAATAAGGCTTTCGAATGCATGGGTGACTATA-ATGGACTTTTCTTACCAATGAATG
* ** * * *
19555 CCTTTTTCTTTTTGTTT-TTCAAAGTAGACATTCAAATATTATCTGTTTTAACAAAAAATGTAAA
65 ACTTTTTCTTCATGTTTCTT-GAGGTAGACATTCAAATATTATCTATTTTAACAAAAAATGTAAA
********* * * *
19619 NNNNNNNNNNCTTAAAATCATTTATGAGATTATAAAACCATTC
129 -AAAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTT
* * * *
19662 AAAGCGAGTAATAAGGCTTTCAAACT-CATGGGAGACTATAGATGGACTTTTCTTGCTAATGAAT
1 AAAGCGAGTAATAAGGCTTTCGAA-TGCATGGGTGACTATA-ATGGACTTTTCTTACCAATGAAT
** ** * *
19726 -ATCTTTTTCTTCACATTTCTCAATGTAGACATTCAAATATTATCTATTTTAACCAAAAATGTAA
64 GA-CTTTTTCTTCATGTTTCTTGAGGTAGACATTCAAATATTATCTATTTTAACAAAAAATGTAA
* *
19790 ACAAAATTCAACTTAAAATCAAGTA-GAAGATTATAAAACCATTT
128 A-AAAATTCAACTTAAAATCAATTATG-AGATTATAAAACTATTT
* * * * * * * *
19834 AAAGCGAGTAATAAGG-GTCCAAACGCATGAGTGACTATAGATGGATTTTTCTTATCAATGAATA
1 AAAGCGAGTAATAAGGCTTTCGAATGCATGGGTGACTATA-ATGGACTTTTCTTACCAATGAATG
* * * * * *
19898 ACTTTTTCTGT-TTGCTTT-TTGAGGGAGACATTCAAATATTATCTGTTTTAATAAGAAATAT-A
65 ACTTTTTCT-TCATG-TTTCTTGAGGTAGACATTCAAATATTATCTATTTTAACAAAAAATGTAA
* *
19960 AAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCATTT
128 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTT
* * ** * * *
20003 AAAGCGAGTAATAAAGCTTTTCAACAT--ATAAGTGACTATAATGG-CATTTTCATATCAATAAA
1 AAAGCGAGTAATAAGGC-TTTCGA-ATGCATGGGTGACTATAATGGAC-TTTTCTTACCAATGAA
* * * ** * * * * *
20065 TGTCTTTTTCTTCACGTTTCGCT-ACATAAAAATTCAGATATTATCTATTTTAATAAAAAATATA
63 TGACTTTTTCTTCATGTTTC-TTGAGGTAGACATTCAAATATTATCTATTTTAACAAAAAATGTA
* * * *
20129 AAAAAATGCAAGTTAAAATCAAGTAAGAGATTATAAAA-TCATTT
127 AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACT-ATTT
** ** * *
20173 AAAATGAGTAATAAGGCTTT-GAACACATGGGTGACTATAGATGAACTTTTCTTGCCAATGAATG
1 AAAGCGAGTAATAAGGCTTTCGAATGCATGGGTGACTATA-ATGGACTTTTCTTACCAATGAATG
* * * * * * *
20237 CCTTTCTCTTTTCA-CTTT-TTGAGGTAGATATTCAAATATTATTTGTTTTAATGAAAAAA-GTA
65 ACTTT-T-TCTTCATGTTTCTTGAGGTAGACATTCAAATATTATCTATTTTAA-CAAAAAATGTA
***********
20299 AAAAAATTCAACTTAAAATCAATTATGAGATTANNNNNNNNNNN
127 AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTT
* * * * * * * *
20343 AAAGTGAGTAATAAAGCTTTCAAATGCATGTGTCACTATAGATGAACTTTTCTTTCCAATGAAAG
1 AAAGCGAGTAATAAGGCTTTCGAATGCATGGGTGACTATA-ATGGACTTTTCTTACCAATGAATG
* * * * *
20408 TCTTTTTCTTCATGTTTCCCT-ATGTAGACATTCAAATATTATCTATTTTAACCAAAAAT-AAAA
65 ACTTTTTCTTCATGTTT-CTTGAGGTAGACATTCAAATATTATCTATTTTAACAAAAAATGTAAA
* *
20471 AAAATTCAAATTAAAATCAATTATGTGATTATAAAACTATTT
129 AAAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTT
* * * * * *
20513 AAAGCGAGTAATAAGGATGTT-GAA-GACTTAGGTGACTATAAATGGAC-TTTCGTACGAATGGA
1 AAAGCGAGTAATAAGGCT-TTCGAATG-CATGGGTGACTAT-AATGGACTTTTCTTACCAATGAA
* * * ** * * * ** *
20575 TGACTTTTGCCTCATATTT-TCTGTTGCAGACA-TCAATTATAAAATATTTTAATAAAAAATGTA
63 TGACTTTTTCTTCATGTTTCT-TGAGGTAGACATTCAAATATTATCTATTTTAACAAAAAATGTA
*********
20638 AAAAANNNNNNNNNNAAAAT-AATTATGAGATTATAAAA-TCATTT
127 AAAAA-ATTCAACTTAAAATCAATTATGAGATTATAAAACT-ATTT
* * * ** * *
20682 AAAGCGTGCAATAAGGCTTTTGAATGCATGAGG-GACTATACCGAACTTTTCTTGCCAATGAAAG
1 AAAGCGAGTAATAAGGCTTTCGAATGCATG-GGTGACTATAATGGACTTTTCTTACCAATG-AA-
*** * * * * * * *
20746 TTTTTTTTTTTTCATGTTT-TTCTAGTTAGACAATT-AAATATTATCTGTTTTAATAAGAAATAT
63 TGACTTTTTCTTCATGTTTCTT-GAGGTAGAC-ATTCAAATATTATCTATTTTAACAAAAAATGT
*
20809 -AAAAAATTTAACTTAAAATCAATTAT
126 AAAAAAATTCAACTTAAAATCAATTAT
Statistics
Matches: 3011, Mismatches: 742, Indels: 283
0.75 0.18 0.07
Matches are distributed among these distances:
162 22 0.01
163 50 0.02
164 9 0.00
165 39 0.01
166 3 0.00
167 1 0.00
168 52 0.02
169 396 0.13
170 1102 0.37
171 983 0.33
172 349 0.12
173 5 0.00
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.36
Consensus pattern (170 bp):
AAAGCGAGTAATAAGGCTTTCGAATGCATGGGTGACTATAATGGACTTTTCTTACCAATGAATGA
CTTTTTCTTCATGTTTCTTGAGGTAGACATTCAAATATTATCTATTTTAACAAAAAATGTAAAAA
AATTCAACTTAAAATCAATTATGAGATTATAAAACTATTT
Found at i:17489 original size:341 final size:338
Alignment explanation
Indices: 16860--20834 Score: 2058
Period size: 341 Copynumber: 11.7 Consensus size: 338
16850 TTCTCAATGT
** * *
16860 AGACATTCAAATATTATCTATTTCAACCA-AAAATGTAAAAAAATTCAACTTAAAATCAATTAAG
1 AGACATTCAAATATTAAATATTTTAA-CAGAAAATGTAAAAAAATTCAACTTAAAATCAATTATG
* * * * *
16924 AGTTTATAAAATTATTTAAAGCGAGTAATAAGGCTTTCGAATGCATAGGTTACTATAGATGGACT
65 AGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTCGAATACATGGGTGACTATAGATGGACT
* * * * * * *
16989 TTTCTTAAGAATGAAT-GACTTATCCTTCCTATTTTTTAAGGTAAACATTCAAATATTGTCTGTT
130 TTTCTTACGAATGAATGGCCTT-TTCTTCCTGTTTTTTGAGGTAGACATTCAAATATTATCTGTT
** * * *
17053 TTAACAGTAAATGAAAAAAAATTTAACTTAAAATCAATTATGTGATTATAAAACCATTTAAAGAG
194 TTAACAAAAAATGTAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAA-CATTTAAAGCG
* * * * * * * *
17118 TGTAATAACGATTTCGAAGACTTAAGTGACTATTAATGGACTTTTGTACCAATGGATGACTTTTC
258 AGTAATAAAGCTTTCAAAG-CATGAGTGACTATTAATAGACTTTTTTACCAATGGATGACTTTTC
17183 CCTCATGTTTCTTGAGGC
322 CCTCATGTTTCTT-AGGC
* ** * * * * *
17201 AGAGATTCAGTTATTAAATATTTTAATAGGAAATGTAAGAAATTTCAACTTAAAATTAATTATGA
1 AGACATTCAAATATTAAATATTTTAACAGAAAATGTAAAAAAATTCAACTTAAAATCAATTATGA
* * * **
17266 GATTATAAAAGTATTTAAAGCGAGTAATAAGGTTTTCGAATGCATGGGTGACTATAGATAAACTT
66 GATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTCGAATACATGGGTGACTATAGATGGACTT
* * * * * *
17331 TTCTTTCTAATGAATGGCCTTTTCTTCCTGTTTCCTT-ATGTAGATATTCAAATATTACCTGTTT
131 TTCTTACGAATGAATGGCCTTTTCTTCCTGTTT-TTTGAGGTAGACATTCAAATATTATCTGTTT
* * * * * *
17395 TAACAAGAAATGTAACAAAATTTGAGTTAAAATCAATTGA-GAGATTAAAAAAGCATTTCAAGCG
195 TAACAAAAAATGTAAAAAAATTTAACTTAAAATCAATT-ATGAGATTATAAAA-CATTTAAAGCG
* * * * * *
17459 AGTAATAAAGCTTTAAAACGCATGAGTGACTA-TAGTAGACTTTTTTAGACAATGAATATAATTT
258 AGTAATAAAGCTTTCAAA-GCATGAGTGACTATTAATAGACTTTTTTA-CCAATGGAT-GACTTT
** * * * *
17523 T-TTTCACGTTTTCCTATGT
320 TCCCTCATG-TTTCTTAGGC
* * ** *
17542 AAAAATTCAAATATTATCTGTTTTAACA-AGAAATGTAAAAAAATTCAACTTAAAATCAATTATG
1 AGACATTCAAATATTAAATATTTTAACAGA-AAATGTAAAAAAATTCAACTTAAAATCAATTATG
* *
17606 AGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT-AAATACATGGGTGACTATAGATGGACT
65 AGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTCGAATACATGGGTGACTATAGATGGACT
* * * **
17670 TTTCTTACCAATGAAT-GCCTTTTTCTTCTTTTTTTTTTTGAGGCCGACATTCAAATATTATCTG
130 TTTCTTACGAATGAATGGCC-TTTTCTTC--CTGTTTTTTGAGGTAGACATTCAAATATTATCTG
** * * * * *
17734 -TTTAATGAAAAATGTAAAAAAATTCAGCTTAAAATCAGTTATGAGAATGTAAAACTATTTAAAG
192 TTTTAACAAAAAATGTAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAAC-ATTTAAAG
* * ** * *
17798 CGAGTAAT-AGGCTTTCAAAAGCATGGGCAACTA-GAGATAGACTTTTCTTACCAATGTAT-ATC
256 CGAGTAATAAAGCTTTC-AAAGCATGAGTGACTATTA-ATAGACTTTT-TTACCAATGGATGA-C
* * * * *
17860 TTTTTCTTCATGTTTTCTAATGT
317 TTTTCCCTCATG-TTTCTTAGGC
* * * *
17883 AGACATTCAAATA-TAATCTATTTCAACCA-AAAATATAAAAAAATTCAACTTAAAATCAATTAA
1 AGACATTCAAATATTAA-ATATTTTAA-CAGAAAATGTAAAAAAATTCAACTTAAAATCAATTAT
* * * * * *
17946 GAGTTTATAAAA-TCATTTAAAGAGAGTAATAAGGCTTTTGAACT-CATAGGTGACTATAAATAG
64 GAGATTATAAAACT-ATTTAAAGCGAGTAATAAGGCTTTCGAA-TACATGGGTGACTATAGATGG
* * *
18009 ATTTTTCTTGA-GAATGAATGGCTTTTTCTTCCTGTTTTTTGAGGTGGACATTCAAATATTATCT
127 ACTTTTCTT-ACGAATGAATGGCCTTTTCTTCCTGTTTTTTGAGGTAGACATTCAAATATTATCT
* ** ** * * *********
18073 ATTTTAACAAAAAATAAAAAAAAATAAAACTTAAAATCAATTTTGTGNNNNNNNNNNCATTTAAA
191 GTTTTAACAAAAAATGTAAAAAAATTTAACTTAAAATCAATTATGAG-ATTATAAAACATTTAAA
* * * * * **
18138 GCGAGTAATAAGGATTTCAAAGACTTAAGTGACTATAAATAGACTTTCCTACCAATGGATGACTT
255 GCGAGTAATAAAGCTTTCAAAG-CATGAGTGACTATTAATAGACTTTTTTACCAATGGATGACTT
* *
18203 TTGCCTCACAT-TTTCTCAGGC
319 TT-CC-CTCATGTTTCTTAGGC
* * * * * * *
18224 AGACATTCAATTATAAAATATTTTAATAGAAAAGGTAAAATATTTCAACTTAAAATTAATTATGA
1 AGACATTCAAATATTAAATATTTTAACAGAAAATGTAAAAAAATTCAACTTAAAATCAATTATGA
* * * * *
18289 GATTATAAAACTATTTAAGGCGCGCAATAAGGCTTTCGAATACATGAGTGACTATA-ACGGACTT
66 GATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTCGAATACATGGGTGACTATAGATGGACTT
* * * ** * *
18353 CTCTTATC-AATGAATGTCTTTTTCTTTATGTTTTTAGAGGTAGACATTCAAATATTATCTGCTT
131 TTCTTA-CGAATGAATGGCCTTTTCTTCCTGTTTTTTGAGGTAGACATTCAAATATTATCTGTTT
* *
18417 TAATAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGCGA
195 TAACAAAAAATGTAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAAC-ATTTAAAGCGA
* * * * * *
18482 GCAATAAAGCTTTCAAACGCATGAGTGACTA-TAGT-GAACTTTTCTTGCTAGTGAAT-ATCTTT
259 GTAATAAAGCTTTCAAA-GCATGAGTGACTATTAATAG-ACTTTT-TTACCAATGGATGA-CTTT
* * * * * *
18544 TTCTTCACGTTTCCCTATGT
320 TCCCTCATGTTT-CTTAGGC
* * ** * * *
18564 AAAAATTCAAATAATT-TTTATTTTAACTA-AAAATGTAAAAAAAATCAACTTAAAATCAAATAA
1 AGACATTCAAAT-ATTAAATATTTTAAC-AGAAAATGTAAAAAAATTCAACTTAAAATCAATTAT
* * * * ** * *
18627 GAGATTATAAGACCATATAAAGCGAGTAATAAGGC-TTCAAACGCATGGGTGATTATAGATGGAG
64 GAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTCGAATACATGGGTGACTATAGATGGAC
* ** * *
18691 TTTTCTTGTC-AATGAAT-GCCTTTTTCTTTTTATTTTTTGAGGTAGATATTCAAATATTATCTG
129 TTTTCTT-ACGAATGAATGGCC-TTTTCTTCCTGTTTTTTGAGGTAGACATTCAAATATTATCTG
* * * * *
18754 TTTTAATAAAAAATATAAAAAAATTCAACTT-AAATGAATTATGAGATTATAAAACCATTCAAAG
192 TTTTAACAAAAAATGTAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAA-CATTTAAAG
* * * * * *
18818 CGAGTAATAAGGCTTTCGAAAGCAT-AGGCGGCTGA--AGATGGACTTTTCTTCCCAATGAAT-A
256 CGAGTAATAAAGCTTTC-AAAGCATGA-GTGACT-ATTA-ATAGACTTTT-TTACCAATGGATGA
* * * * ***
18879 TCTTTTTCTTCACGTTTCCTAATAT
316 -CTTTTCCCTCATGTTT-CTTAGGC
* * ** * * *
18904 AAATATTCAAATATTATCTGTTTTAACCA-AAAATGTAAAAAAATTTAACTTAAATTCAATTATG
1 AGACATTCAAATATTAAATATTTTAA-CAGAAAATGTAAAAAAATTCAACTTAAAATCAATTATG
* * ** * * ** * * *
18968 TGATTATAAAACTATTTAAAGCGAGTAATAAGGATTTTAAAGACTTAAGCGACTATAAATGGATG
65 AGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTCGAATACATGGGTGACTATAGATGGA-C
* * * ** * * * * *
19033 TTTTC-TA-GCAATGGAT-GACTTTTGCCTCAC-GTTTCCCTAAGCATAG--ATTCAATTATAAA
129 TTTTCTTACG-AATGAATGGCCTTTT-CTTC-CTGTTT-TTTGAG-GTAGACATTCAAATATTAT
* * ** * *
19092 ATATTTTAACAGGAAATGT-AAGAAATTTCAACTTAAAATCAATTATGAGATTATAAAAGTATTT
189 CTGTTTTAACAAAAAATGTAAAAAAATTT-AACTTAAAATCAATTATGAGATTATAAAA-CATTT
* * * * * *
19156 AAAACGAGTAAT-AAGACTTTCGAATGCATGGGTGACTA-TAGATCGACATTTCTTTA-TAATGA
252 AAAGCGAGTAATAAAG-CTTTC-AAAGCATGAGTGACTATTA-ATAGAC-TTT-TTTACCAATGG
* * * * * *
19218 AT-AGCTTTTTCTTC-TCGCTTCCCTATGT
312 ATGA-CTTTTCCCTCAT-G-TTTCTTAGGC
** * * * *
19246 AGACATTCAAATATTACCTGTTTTAACA-AGAAATGTAAAAAAAATTCAAGTGAATATCAATTAT
1 AGACATTCAAATATTAAATATTTTAACAGA-AAATGT-AAAAAAATTCAACTTAAAATCAATTAT
* * * * * * *
19310 GAGATTATAAAAGC-ATTTTATGCAAGTAATAAAGCTTTCAAATGCATGAGTGACTATAG-TGGA
64 GAGATTATAAAA-CTATTTAAAGCGAGTAATAAGGCTTTCGAATACATGGGTGACTATAGATGGA
* * * * * * * * *
19373 CTTTTTTTGCTG-ATGAATTG-CTTTTCTTCAC-G-TTCTCGATGTAAACATTTAAATACTATCT
128 CTTTTCTTAC-GAATGAATGGCCTTTTCTTC-CTGTTTTTTGAGGTAGACATTCAAATATTATCT
* * * * *
19434 ATTTTAATAAGAAATGTAAAAAAATTTAACTT---A--AATTATAAGGTTATAAAACCATTTAAA
191 GTTTTAACAAAAAATGTAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAA-CATTTAAA
* * * * * * *
19494 GTGAGTAATAAGGC-TTCGAACGCATGGGTGACTA-TAGATGGACTTTTCTTACCAATGAATGCC
255 GCGAGTAATAAAGCTTTC-AAAGCATGAGTGACTATTA-ATAGACTTTT-TTACCAATGGATGAC
* * ** * *
19557 TTTTTCTTTTTGTTT-TTCAAAGT
317 TTTTCCCTCATGTTTCTT--AGGC
** * * ********* *
19580 AGACATTCAAATATTATCTGTTTTAACAAAAAATGTAAANNNNNNNNNNCTTAAAATCATTTATG
1 AGACATTCAAATATTAAATATTTTAACAGAAAATGTAAA-AAAATTCAACTTAAAATCAATTATG
* * * *
19645 AGATTATAAAACCATTCAAAGCGAGTAATAAGGCTTTCAAACT-CATGGGAGACTATAGATGGAC
65 AGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTCGAA-TACATGGGTGACTATAGATGGAC
* * ** * * * ** * *
19709 TTTTCTTGCTAATGAATATCTTTTTCTTCAC-ATTTCTCAATGTAGACATTCAAATATTATCTAT
129 TTTTCTTACGAATGAATGGCCTTTTCTTC-CTGTTTTTTGAGGTAGACATTCAAATATTATCTGT
* * *
19773 TTTAACCAAAAATGTAAACAAAATTCAACTTAAAATCAAGTA-GAAGATTATAAAACCATTTAAA
193 TTTAACAAAAAATGTAAA-AAAATTTAACTTAAAATCAATTATG-AGATTATAAAA-CATTTAAA
** * * * * * *
19837 GCGAGTAAT-AAGGGTCCAAACGCATGAGTGACTA-TAGATGGATTTTTCTTATCAATGAATAAC
255 GCGAGTAATAAAGCTTTCAAA-GCATGAGTGACTATTA-ATAGACTTTT-TTACCAATGGATGAC
* ** *
19900 TTTT-TCTGTTTGCTTT-TTGAGGG
317 TTTTCCCT-CATG-TTTCTT-AGGC
** * * * *
19923 AGACATTCAAATATTATCTGTTTTAATA-AGAAATAT-AAAAAATTTAACTTAAAATCAATTATG
1 AGACATTCAAATATTAAATATTTTAACAGA-AAATGTAAAAAAATTCAACTTAAAATCAATTATG
* * * * **
19986 AGATTATAAAACCATTTAAAGCGAGTAATAAAGCTTTTC-AACATATAAGTGACTATA-ATGG-C
65 AGATTATAAAACTATTTAAAGCGAGTAATAAGGC-TTTCGAATACATGGGTGACTATAGATGGAC
* * * * ** ** * * *
20048 ATTTTCATATC-AATAAATGTCTTTTTCTTCAC-GTTTCGCT-ACATAAAAATTCAGATATTATC
129 -TTTTCTTA-CGAATGAATGGCCTTTTCTTC-CTGTTT-TTTGAGGTAGACATTCAAATATTATC
* * * ** * * *
20110 TATTTTAATAAAAAATATAAAAAAATGCAAGTTAAAATCAAGTAAGAGATTATAAAATCATTTAA
190 TGTTTTAACAAAAAATGTAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAA-CATTTAA
** * * * * *
20175 AATGAGTAATAAGGCTTTGAACA-CATGGGTGACTA-TAGAT-GAACTTTTCTTGCCAATGAATG
254 AGCGAGTAATAAAGCTTTCAA-AGCATGAGTGACTATTA-ATAG-ACTTTT-TTACCAATGGATG
* ** * *
20237 CCTTTCTCTTTTCACT-TTT-TGAGGT
315 ACTTT-TC-CCTCA-TGTTTCTTAGGC
* ** * * *
20262 AGATATTCAAATATTATTTGTTTTAA-TGAAAAAAGTAAAAAAATTCAACTTAAAATCAATTATG
1 AGACATTCAAATATTAAATATTTTAACAG-AAAATGTAAAAAAATTCAACTTAAAATCAATTATG
*********** * * * * * * *
20326 AGATTANNNNNNNNNNNAAAGTGAGTAATAAAGCTTTCAAATGCATGTGTCACTATAGATGAACT
65 AGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTCGAATACATGGGTGACTATAGATGGACT
* * * * * * ** * *
20391 TTTCTTTCCAATGAAAGTCTTTTTCTTCATGTTTCCCT-ATGTAGACATTCAAATATTATCTATT
130 TTTCTTACGAATGAATGGCCTTTTCTTCCTGTTT-TTTGAGGTAGACATTCAAATATTATCTGTT
* * * * *
20455 TTAACCAAAAAT-AAAAAAAATTCAAATTAAAATCAATTATGTGATTATAAAACTATTTAAAGCG
194 TTAACAAAAAATGTAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAAC-ATTTAAAGCG
* * * * * * ** *
20519 AGTAATAAGGATGTT-GAAG-ACTTAGGTGACTATAAATGGACTTTCGTACGAATGGATGACTTT
258 AGTAATAAAGCT-TTCAAAGCA-TGA-GTGACTATTAATAGACTTTTTTACCAATGGATGACTTT
* * *
20582 TGCCTCATATTTTCTGT-TGC
320 TCCCTCAT-GTTTCT-TAGGC
* * * * *********
20602 AGACA-TCAATTATAAAATATTTTAATAAAAAATGTAAAAAANNNNNNNNNNAAAAT-AATTATG
1 AGACATTCAAATATTAAATATTTTAACAGAAAATGTAAAAAA-ATTCAACTTAAAATCAATTATG
* * * * ** *
20665 AGATTATAAAA-TCATTTAAAGCGTGCAATAAGGCTTTTGAATGCATGAGG-GACTATA-CCGAA
65 AGATTATAAAACT-ATTTAAAGCGAGTAATAAGGCTTTCGAATACATG-GGTGACTATAGATGGA
* * **** * * *
20727 CTTTTCTTGCCAATGAAAGTTTTTTTTTTTTCATGTTTTTCT-AGTTAGACAATT-AAATATTAT
128 CTTTTCTTACGAATG-AA-TGGCCTTTTCTTCCTGTTTTT-TGAGGTAGAC-ATTCAAATATTAT
* * *
20790 CTGTTTTAATAAGAAATAT-AAAAAATTTAACTTAAAATCAATTAT
189 CTGTTTTAACAAAAAATGTAAAAAAATTTAACTTAAAATCAATTAT
Statistics
Matches: 2841, Mismatches: 637, Indels: 313
0.75 0.17 0.08
Matches are distributed among these distances:
332 2 0.00
333 12 0.00
334 139 0.05
335 53 0.02
336 12 0.00
337 44 0.02
338 38 0.01
339 292 0.10
340 870 0.31
341 904 0.32
342 270 0.10
343 197 0.07
344 8 0.00
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.35
Consensus pattern (338 bp):
AGACATTCAAATATTAAATATTTTAACAGAAAATGTAAAAAAATTCAACTTAAAATCAATTATGA
GATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTCGAATACATGGGTGACTATAGATGGACTT
TTCTTACGAATGAATGGCCTTTTCTTCCTGTTTTTTGAGGTAGACATTCAAATATTATCTGTTTT
AACAAAAAATGTAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACATTTAAAGCGAGT
AATAAAGCTTTCAAAGCATGAGTGACTATTAATAGACTTTTTTACCAATGGATGACTTTTCCCTC
ATGTTTCTTAGGC
Done.