Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398953.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2235.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2457
ACGTcount: A:0.24, C:0.10, G:0.09, T:0.26

Warning! 765 characters in sequence are not A, C, G, or T


Found at i:378 original size:171 final size:161

Alignment explanation


    Indices: 176--493  Score: 289
    Period size: 171  Copynumber: 1.9  Consensus size: 161

        166 NNNNNNNNTG

                 *    *  *                          **         **            
        176 TTTTATATTTTTGGTTAAAACACACTATAATTAAATGCATGTCTTGAAAAATGGGCAA-AAA-AA
          1 TTTTACATTTCTGATTAAAACACACTATAATTAAATGCATACCTTGAAAAACAGG-AAGAAACAA

                   *    *                **    *                             
        239 GCTATTCGTTGAGAAAAAAAGTCCATTTATTGTCACCCACTCCTTAAAAAAGCTAATTACTCACT
         65 GC-ATTCATTGACAAAAAAAGTCCATTTAGAGTCAACCACTCCTTAAAAAAGCTAATTACTCACT

                 *                                     
        304 TTAAATAGTTTTATAATCTCATAATTGATTTNNNNNNNNNNTT
        129 TTAAACAGTTTTATAATCTCATAATTGATTT----------TT

                                  * *       *     *        *                 
        347 TTTTACATTTCTGATTAAAACATATTATAATTGAATGCTTACCTTGAGAAACAGGAAGAAACAAG
          1 TTTTACATTTCTGATTAAAACACACTATAATTAAATGCATACCTTGAAAAACAGGAAGAAACAAG

                                 *               *  *  *        *       *    
        412 CATTCATTGACAAAAAAAGTCTATTTAGAGTCAACCATTCTTTCAAAAAGCTTATTACTCGCTTT
         66 CATTCATTGACAAAAAAAGTCCATTTAGAGTCAACCACTCCTTAAAAAAGCTAATTACTCACTTT

                *            
        477 AAACGGTTTTATAATCT
        131 AAACAGTTTTATAATCT

        494 NNNNNNNNNN


Statistics
Matches: 120,  Mismatches: 25, Indels: 4
        0.81            0.17        0.03

Matches are distributed among these distances:
 170    2  0.02
 171  114  0.95
 172    4  0.03

ACGTcount: A:0.37, C:0.14, G:0.11, T:0.35


Consensus pattern (161 bp):   
TTTTACATTTCTGATTAAAACACACTATAATTAAATGCATACCTTGAAAAACAGGAAGAAACAAG
CATTCATTGACAAAAAAAGTCCATTTAGAGTCAACCACTCCTTAAAAAAGCTAATTACTCACTTT
AAACAGTTTTATAATCTCATAATTGATTTTT
Done.