Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398961.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2243.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 839

Length: 1399
ACGTcount: A:0.26, C:0.09, G:0.10, T:0.30

Warning! 351 characters in sequence are not A, C, G, or T


Found at i:1195 original size:170 final size:171

Alignment explanation


    Indices: 719--1314  Score: 800
    Period size: 171  Copynumber: 3.5  Consensus size: 171

        709 NNNNNNNNNN

                              *                                     *        
        719 TAAATAGTTTTATAATCTAATAATTGATTTTAGGTTGAATTTTTTTATATTTTTGGATAAAATAG
          1 TAAATAGTTTTATAATCTCATAATTGATTTTAGGTTGAATTTTTTTATATTTTTGGTTAAAATAG

                       *     *             *  **          *     *        *   
        784 ATTATAATTGAATGTTTACCTTGAGAAACGTGAACAAAAAGCCATTTATTGACAAGAAAAGTCCA
         66 ATTATAATTGACTGTTTGCCTTGAGAAACGTAAAGGAAAAGCCATTGATTGATAAGAAAAGCCCA

              *        *   *          *     *      * 
        849 TTAATAGTCACTCATGCCTTCAAAAGTCTTATGACTCGCCT
        131 TTTATAGTCACCCATACCTTCAAAAGCCTTATTACTCGCTT

                                 *         **        *                      *
        890 TAAATAGTTTTATAATCTCATTATTGATTTTTTGTTGAATTGTTTTATATTTTTGGTTAAAATAA
          1 TAAATAGTTTTATAATCTCATAATTGATTTTAGGTTGAATTTTTTTATATTTTTGGTTAAAATAG

               *        ** *      *                    *      *            * 
        955 ATTGTAATTGACAATCTGCCTTAAGAAACGTAAAGGAAAAGCCTTTGATTAATAAGAAAAGCCTA
         66 ATTATAATTGACTGTTTGCCTTGAGAAACGTAAAGGAAAAGCCATTGATTGATAAGAAAAGCCCA

                                 *            *      
       1020 TTTATAGTCACCCATACCTTCGAAAGCCTTATTAGTCGCTT
        131 TTTATAGTCACCCATACCTTCAAAAGCCTTATTACTCGCTT

               * *                            *                      *       
       1061 TAATTGGTTTTATAATCTCATAATTGATTTTAGGAT-AATTTTTTTTATATTTTTGGGT-AAATA
          1 TAAATAGTTTTATAATCTCATAATTGATTTTAGGTTGAA-TTTTTTTATATTTTTGGTTAAAATA

                                *                                            
       1124 GATTATAATTGACTGTTTGCATTGAGAAACGTAAAGGAAAAGCCATTGATTGATAAGAAAAGCCC
         65 GATTATAATTGACTGTTTGCCTTGAGAAACGTAAAGGAAAAGCCATTGATTGATAAGAAAAGCCC

                         *            *        *      
       1189 ATTTATAGTCACCTATACCTTCAAAACCCTTATTATTCGCTT
        130 ATTTATAGTCACCCATACCTTCAAAAGCCTTATTACTCGCTT

                                                                          *  
       1231 TAAATAGTTTTATAATCTCATAATTGATTTTAGGTTGAATTTTTTTATATTTTTGGTTAAAACAG
          1 TAAATAGTTTTATAATCTCATAATTGATTTTAGGTTGAATTTTTTTATATTTTTGGTTAAAATAG

                       *       
       1296 ATTATAATTGATTGTTTGC
         66 ATTATAATTGACTGTTTGC

       1315 TTTTAGTTAA


Statistics
Matches: 363,  Mismatches: 59, Indels: 6
        0.85            0.14        0.01

Matches are distributed among these distances:
 170  151  0.42
 171  212  0.58

ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41


Consensus pattern (171 bp):   
TAAATAGTTTTATAATCTCATAATTGATTTTAGGTTGAATTTTTTTATATTTTTGGTTAAAATAG
ATTATAATTGACTGTTTGCCTTGAGAAACGTAAAGGAAAAGCCATTGATTGATAAGAAAAGCCCA
TTTATAGTCACCCATACCTTCAAAAGCCTTATTACTCGCTT
Done.