Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398965.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2247.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5901
ACGTcount: A:0.19, C:0.07, G:0.06, T:0.19

Warning! 2854 characters in sequence are not A, C, G, or T


Found at i:3184 original size:169 final size:170

Alignment explanation


    Indices: 2839--3190  Score: 415
    Period size: 169  Copynumber: 2.1  Consensus size: 170

       2829 NNNNNNNNNN

                        **         *    *                     *             *
       2839 AGCGAGTAATAAGGCTTTTAAAGGAATGGGTGACTATAAATAGACTTTTTTTTCTCAACGAATGT
          1 AGCGAGTAATAAACCTTTTAAAGAAATGAGTGACTATAAATAGACTTTTTCTTCTCAACGAATGG

                  * *         **   *   *        *          *   *      *      
       2904 CTTTTTTTTCATATTTCTTGAGATAGATATTCAATTTTAGTCTGTTTTAACCAAAATTTAAAAAA
         66 CTTTTTCTGCATATTTCTCAAGACAGACATTCAATTATAGTCTGTTTAAACAAAAATTAAAAAAA

                          *                          
       2969 GTTCAACTTAAAATTAATTATTAGATTATAGAACCATTTAA
        131 GTT-AACTTAAAATCAATTATTAGATTATAGAACCATTTAA

                                            *        *                *      
       3010 AGCGAGTAATAAACCTTTTAAAGAAATGAGTGGCTATAAATGGAC-TTTTCTTCTCAATGAATGG
          1 AGCGAGTAATAAACCTTTTAAAGAAATGAGTGACTATAAATAGACTTTTTCTTCTCAACGAATGG

                        *         *   *    *                                 
       3074 C-TTTTCTGCATGTTTCTCAAGCCAGGCATTTAATTATAGTCTGTTTAAACTAAAAATGTAAAAA
         66 CTTTTTCTGCATATTTCTCAAGACAGACATTCAATTATAGTCTGTTTAAAC-AAAAAT-TAAAAA

                                                *      
       3138 AAGTT-ACTTAAAATCAATTATTAGATTATCA-AACGATTTAA
        129 AAGTTAACTTAAAATCAATTATTAGATTAT-AGAACCATTTAA

                        
       3179 AGCGAGTAATAA
          1 AGCGAGTAATAA

       3191 GGCTNNNNNN


Statistics
Matches: 153,  Mismatches: 25, Indels: 8
        0.82            0.13        0.04

Matches are distributed among these distances:
 169   81  0.53
 170   23  0.15
 171   49  0.32

ACGTcount: A:0.38, C:0.12, G:0.14, T:0.37


Consensus pattern (170 bp):   
AGCGAGTAATAAACCTTTTAAAGAAATGAGTGACTATAAATAGACTTTTTCTTCTCAACGAATGG
CTTTTTCTGCATATTTCTCAAGACAGACATTCAATTATAGTCTGTTTAAACAAAAATTAAAAAAA
GTTAACTTAAAATCAATTATTAGATTATAGAACCATTTAA
Done.