Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018398966.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2248.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2975
ACGTcount: A:0.32, C:0.10, G:0.12, T:0.30
Warning! 466 characters in sequence are not A, C, G, or T
Found at i:819 original size:171 final size:170
Alignment explanation
Indices: 1--1749 Score: 1601
Period size: 171 Copynumber: 10.2 Consensus size: 170
* * * * ** *
1 ATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGCGTGAATATCAATAAAATTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTT
* * * ********** * *
66 TCTTGACAATGAATGCCTTTTTCTTTATGTTTNNNNNNNNNNACATTCAATTATAATTTGTTTTA
66 TCTTGCCAATGAATG-CTTTTTCTTCACGTTTCTCTAGGTAGACATTCAATTATAGTCTGTTTTA
* * * * * *
131 AACAATAACGTAAAAATATATTGAACCTAAAATCAATTTTGAG
130 ACCAAAAATGTAAAAA-A-ATTCAACTTAAAATCAATTATGAG
* * * * **********
174 ATTTTAAAACCATTTAAAGCGAATAATAAGGCTTTTGAAGGAATAGGAGACTATNNNNNNNNNNT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTT
* *
239 TCTTGCCAATGAATGCTTTTTTTATCACGTTTCT-TGAGGTAGACATTCAATTATAGTCTATTTT
66 TCTTGCCAATGAATGCTTTTTCT-TCACGTTTCTCT-AGGTAGACATTCAATTATAGTCTGTTTT
* *
303 AACC-AAAATAT-AAAAAATTCAACTTATAATCAATTATGA-
129 AACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAG
* * ********** *
342 AGTTATAAAACCGTTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTNNNNNNNNNNGAACTT
1 A-TTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTT
* * * * * *
407 TTCTTGCCAATGAATGCCTTTTTCTTCACATTTCT-TGAGGTTGACAATCAATAAGAATCT-TTT
65 TTCTTGCCAATGAATG-CTTTTTCTTCACGTTTCTCT-AGGTAGACATTCAATTATAGTCTGTTT
** * *
470 TTGCCAAAAATGTAAAAAAAAAATTGAACTTAAAATCAATTTTGAG
128 TAACCAAAAATGT---AAAAAAATTCAACTTAAAATCAATTATGAG
* * * * * *
516 ACTGTAAAACCATTTAATGTGAGTAATAAGACTTTTGAAGAAATGGGTGACTAT-AATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTT
* ** * *
580 TCTTTCTGATGAATGCATTTTTCTTCATGTTTCT-TAGAGTAGACATTTAATTATTA-TCTGTTT
66 TCTTGCCAATGAATGC-TTTTTCTTCACGTTTCTCTAG-GTAGACATTCAATTA-TAGTCTGTTT
* * * *
643 TAACCAAATATGTAAAAAAATTTAACTTCAAATCAATTATGGG
128 TAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAG
* * *
686 ATTATAAAACAATTTAAAGCAAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTT
* * * *
751 TCTTACCAATGAATGTCTTTTTCTTCACGTTTCTCTAGCTAGGCAATCAATTATAGTCTGTTTTA
66 TCTTGCCAATGAATG-CTTTTTCTTCACGTTTCTCTAGGTAGACATTCAATTATAGTCTGTTTTA
* * *
816 ACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTGTTAG
130 ACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAG
* * * ** *
857 ATTATAAAACAATTTAAAACTAGTAATAAGGCTTTTGAAGGAATCAGTGACTATAAATTGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTT
* * *
922 TCTTGCCAATGAATGACTTTTTCTTCATC-TTTCTCAAGGTGGACATTCGATTATAGTCTGTTTT
66 TCTTGCCAATGAATG-CTTTTTCTTCA-CGTTTCTCTAGGTAGACATTCAATTATAGTCTGTTTT
* *
986 AACC-AAAATGAAAAAAAATTCAACTTAAAATCAATTATCAG
129 AACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAG
* * * * *
1027 ATTATAAAACAATTTAAAGCGAGTAATAAGGTTTTTAAAGGAATGAGTGACGATAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTT
* * * * * *
1092 TCTT-CTAAATGAATGGCTTTTTCCTCACATTTCT-TGATGTAGGCATTCAATTATAGTTTGTTT
66 TCTTGC-CAATGAAT-GCTTTTTCTTCACGTTTCTCT-AGGTAGACATTCAATTATAGTCTGTTT
* * *
1155 TATCCACAAATGTAAAAAAATTAAACTTAAAATCAATTATGAG
128 TAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAG
* * * * * *
1198 ATTAAAAAACCGTTTAAAGCAAGTAAAAAGGCTTTT-AGAGGAATGGGTGACTACAAATGAACTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGA-AGGAATGGGTGACTATAAATGGACTT
* * * * * *
1262 TTCTTGCCAATGAAAGCCTTTTTCTTTAAGTTTCTCAAAGTAGACATTGAATTATAGTCTGTTTT
65 TTCTTGCCAATGAATG-CTTTTTCTTCACGTTTCTCTAGGTAGACATTCAATTATAGTCTGTTTT
*
1327 AACTAAAAATGTAAAAAAAATTCAACTTAAAATCAATTATGAG
129 AACCAAAAATGT-AAAAAAATTCAACTTAAAATCAATTATGAG
1370 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTT
* * * * * * * *
1435 TCTT-ACAGATGAATGCTTGTTTCTTTATGTTTCTCAAGGTTGACATTGAATTATTA-TTTATTT
66 TCTTGCCA-ATGAATGCTT-TTTCTTCACGTTTCTCTAGGTAGACATTCAATTA-TAGTCTGTTT
* * * * *
1498 TAACCAAAAATATAAAAAAGTTCAGCTTCAAATCAATTATGGG
128 TAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAG
* * ** * * * *
1541 AATATAAAATCATTTAAAGTAAGTAATAAAGCTTTTGAAGGAATAGGTAACTAT-AATAGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTT
* * * * * * * * *
1605 T-TTTCTCATTGAATGGCTTTTTCTACATGTTTCCCAAGGCAGGCATTCAATTATAGTATGTTTT
66 TCTTGC-CAATGAAT-GCTTTTTCTTCACGTTTCTCTAGGTAGACATTCAATTATAGTCTGTTTT
** * *
1669 AATAAAAAATATAAAAAAATTCAA-TTCAAAATCATTTATGAG
129 AACCAAAAATGTAAAAAAATTCAACTT-AAAATCAATTATGAG
*
1711 ATTATAAAACCATTTAAAGCGAGTAATAAGACTTTTGAA
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAA
1750 NNNNNNNNNN
Statistics
Matches: 1294, Mismatches: 244, Indels: 79
0.80 0.15 0.05
Matches are distributed among these distances:
168 7 0.01
169 123 0.10
170 340 0.26
171 444 0.34
172 208 0.16
173 171 0.13
174 1 0.00
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.35
Consensus pattern (170 bp):
ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTT
TCTTGCCAATGAATGCTTTTTCTTCACGTTTCTCTAGGTAGACATTCAATTATAGTCTGTTTTAA
CCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAG
Found at i:1038 original size:341 final size:338
Alignment explanation
Indices: 1--1749 Score: 1565
Period size: 341 Copynumber: 5.1 Consensus size: 338
* * * * ** *
1 ATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGCGTGAATATCAATAAAATTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTT
* ** ********** * * *
66 TCTTGA-CAATGAATGCCTTTTTCTTTATGTTTNNNNNNNNNNACATTCAATTATAATTTGTTTT
66 TCTT-ACCAATGAATG-CTTTTTCTTCACATTTCTTGAGGTAGACAATCAATTATAGTCTGTTTT
* * * * * * * *
130 AAACAATAACGTAAAAATATATTGAACCTAAAATCAATTTTGAGATTTTAAAACCATTTAAAGCG
129 AACCAAAAATGTAAAAA-A-ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAA-CT
* *********
195 AA-TAATAAGGCTTTTGAAGGAAT-AGGAGACTATNNNNNNNNNNTTCTTGCCAATGAATGCTTT
191 AAGTAATAAGGCTTTTGAAGGAATGA-GTGACTAT-AATTGACTTTTCTTGCCAATGAATGCTTT
* * ** * *
258 TTTTATCACGTTTCTTGAGGTAGACATTCAATTATAGTCTATTTTAACCAAAAT-ATAAAAAATT
254 TTCT-TCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAATGAAAAAAAATT
*
322 CAACTTATAATCAATTATGA-
318 CAACTTAAAATCAATTATGAG
* * ********** *
342 AGTTATAAAACCGTTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTNNNNNNNNNNGAACTT
1 A-TTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTT
* * * * *
407 TTCTTGCCAATGAATGCCTTTTTCTTCACATTTCTTGAGGTTGACAATCAATAAGAATCT-TTTT
65 TTCTTACCAATGAATG-CTTTTTCTTCACATTTCTTGAGGTAGACAATCAATTATAGTCTGTTTT
** * * * * **
471 TGCCAAAAATGTAAAAAAAAAATTGAACTTAAAATCAATTTTGAGACTGTAAAACCATTTAATGT
129 AACCAAAAATGT---AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAACT
* * * * * * **
536 GAGTAATAAGACTTTTGAAGAAATGGGTGACTATAATGGACTTTTCTTTCTGATGAATGCATTTT
191 AAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAATTGACTTTTCTTGCCAATGAATGC-TTTT
* * *
601 TCTTCATGTTTCT-TAGAGTAGACATTTAATTATTA-TCTGTTTTAACCAAATATGTAAAAAAAT
255 TCTTCATGTTTCTCAAG-GTAGACATTCAATTA-TAGTCTGTTTTAACCAAA-ATGAAAAAAAAT
* * *
664 TTAACTTCAAATCAATTATGGG
317 TCAACTTAAAATCAATTATGAG
* * *
686 ATTATAAAACAATTTAAAGCAAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTT
* * *
751 TCTTACCAATGAATGTCTTTTTCTTCACGTTTCTCT-AGCTAGGCAATCAATTATAGTCTGTTTT
66 TCTTACCAATGAATG-CTTTTTCTTCACATTTCT-TGAGGTAGACAATCAATTATAGTCTGTTTT
* * * *
815 AACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTGTTAGATTATAAAACAATTTAAAACT-A
129 AACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTT-AAACTAA
*
879 GTAATAAGGCTTTTGAAGGAATCAGTGACTATAAATTGACTTTTCTTGCCAATGAATGACTTTTT
193 GTAATAAGGCTTTTGAAGGAATGAGTGACTAT-AATTGACTTTTCTTGCCAATGAATG-CTTTTT
* * *
944 CTTCATCTTTCTCAAGGTGGACATTCGATTATAGTCTGTTTTAACCAAAATGAAAAAAAATTCAA
256 CTTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAATGAAAAAAAATTCAA
*
1009 CTTAAAATCAATTATCAG
321 CTTAAAATCAATTATGAG
* * * * *
1027 ATTATAAAACAATTTAAAGCGAGTAATAAGGTTTTTAAAGGAATGAGTGACGATAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTT
* * * * * *
1092 TCTT-CTAAATGAATGGCTTTTTCCTCACATTTCTTGATGTAGGCATTCAATTATAGTTTGTTTT
66 TCTTAC-CAATGAAT-GCTTTTTCTTCACATTTCTTGAGGTAGACAATCAATTATAGTCTGTTTT
* * * * *
1156 ATCCACAAATGTAAAAAAATTAAACTTAAAATCAATTATGAGATTAAAAAACCGTTTAAAGC-AA
129 AACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAA-CTAA
* * * * *
1220 GTAAAAAGGCTTTT-AGAGGAATGGGTGACTACAAATGAACTTTTCTTGCCAATGAAAGCCTTTT
193 GTAATAAGGCTTTTGA-AGGAATGAGTGACTATAATTG-ACTTTTCTTGCCAATGAATG-CTTTT
* * * * *
1284 TCTTTAAGTTTCTCAAAGTAGACATTGAATTATAGTCTGTTTTAACTAAAAATGTAAAAAAAATT
255 TCTTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAAC-CAAAATG-AAAAAAAATT
1349 CAACTTAAAATCAATTATGAG
318 CAACTTAAAATCAATTATGAG
1370 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTT
* ** ** * * * * *
1435 TCTTA-CAGATGAATGCTTGTTTCTTTATGTTTCTCAAGGTTGACATTGAATTATTA-TTTATTT
66 TCTTACCA-ATGAATGCTT-TTTCTTCACATTTCTTGAGGTAGACAATCAATTA-TAGTCTGTTT
* * * * * * * *
1498 TAACCAAAAATATAAAAAAGTTCAGCTTCAAATCAATTATGGGAATATAAAATCATTTAAAGTAA
128 TAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAACTAA
* * * * *
1563 GTAATAAAGCTTTTGAAGGAAT-AGGTAACTATAATAGACTTTT-TTTCTCATTGAATGGCTTTT
193 GTAATAAGGCTTTTGAAGGAATGA-GTGACTATAATTGACTTTTCTTGC-CAATGAAT-GCTTTT
* * * * * **
1626 TCTACATGTTTCCCAAGGCAGGCATTCAATTATAGTATGTTTTAATAAAAAAT-ATAAAAAAATT
255 TCTTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAA-CCAAAATGA-AAAAAAATT
*
1690 CAA-TTCAAAATCATTTATGAG
318 CAACTT-AAAATCAATTATGAG
*
1711 ATTATAAAACCATTTAAAGCGAGTAATAAGACTTTTGAA
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAA
1750 NNNNNNNNNN
Statistics
Matches: 1150, Mismatches: 217, Indels: 82
0.79 0.15 0.06
Matches are distributed among these distances:
340 15 0.01
341 479 0.42
342 300 0.26
343 333 0.29
344 23 0.02
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.35
Consensus pattern (338 bp):
ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTT
TCTTACCAATGAATGCTTTTTCTTCACATTTCTTGAGGTAGACAATCAATTATAGTCTGTTTTAA
CCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAACTAAGTA
ATAAGGCTTTTGAAGGAATGAGTGACTATAATTGACTTTTCTTGCCAATGAATGCTTTTTCTTCA
TGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAATGAAAAAAAATTCAACTTAA
AATCAATTATGAG
Found at i:1397 original size:684 final size:674
Alignment explanation
Indices: 1--1749 Score: 1805
Period size: 684 Copynumber: 2.6 Consensus size: 674
* * * * * *
1 ATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGCGTGAATATCAATAAAATTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTT
**********
66 TCTTGACAATGAATGCCTTTTTCTTTATGTTTNNNNNNNNNNACATTCAATTATAATTTGTTTTA
66 TCTT-ACAATGAATG-CTTTTTCTTTATGTTTCTCAAGCTAGACATTCAATTAT-ATTTGTTTTA
* * * * * * *
131 AACAATAACGTAAAAATATATTGAACCTAAAATCAATTTTGAGATTTTAAAACCATTTAAAGCGA
128 ACCAAAAACGTAAAAA-A-ATTCAACTTAAAATCAATTTT-AGATTATAAAA-CATTTAAAACTA
* * ********* *
196 ATAATAAGGCTTTTGAAGGAATAGGAGACTATNNNNNNNNNNTTCTTGCCAATGAATGCTTTTTT
189 GTAATAAGGCTTTTGAAGGAATAGGTGACTAT-AATAGACTTTTCTTGCCAATGAATGCTTTTTC
** * * *
261 TATCA-CGTTTCTTGAGGTAGACATTCAATTATAGTCTATTTTAACCAAAATATAAAAAATTCAA
253 T-TCATC-TTTCTCAAGGTGGACATTCAATTATAGTCTGTTTTAACCAAAATAAAAAAAATTCAA
* * *
325 CTTATAATCAATTATGA-AGTTATAAAACCGTTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGG
316 CTTAAAATCAATTATGAGA-TTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGA
********** * * *
389 GTNNNNNNNNNNGAACTTTTCTTGCCAATGAATGCCTTTTTCTTCACATTTCTTGAGGTTGACAA
380 GTGACGATAAATGAACTTTTCTTGCAAATGAATGCCTTTTTCCTCACATTTCTTGAGGTAGACAA
* *
454 TCAATAAGAATCTTTTTTGCCAAAAATGTAAAAAAAAAATTGAACTTAAAATCAATTTTGAGACT
445 TCAATAAGAATCTTTTTTGCCAAAAATGT--AAAAAAAATTAAACTTAAAATCAATTATGAGACT
** * ** * * *
519 GTAAAACCATTTAATGTGAGTAATAAGACTTTTGAAGAAATGGGTGACTATAATGGACTTTTCTT
508 AAAAAACCATTTAAAGCAAGTAAAAAGACTTTTGAAGAAATGGGTGACTAAAATGAACTTTTCTT
* ** * * * * *
584 TCTGATGAATGCATTTTTCTTCATGTTTCTTAGAGTAGACATTTAATTATTATCTGTTTTAACCA
573 GCCAATGAAAGCATTTTTCTTCAAGTTTCTCAAAGTAGACATTGAATTATTATCTGTTTTAACCA
* * * *
649 AATATGTAAAAAAATTTAACTTCAAATCAATTATGGG
638 AAAATGTAAAAAAATTCAACTTAAAATCAATTATGAG
* *
686 ATTATAAAACAATTTAAAGCAAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTT
* * * * * *
751 TCTTACCAATGAATGTCTTTTTCTTCACGTTTCTCTAGCTAGGCAATCAATTATAGTCTGTTTTA
66 TCTTA-CAATGAATG-CTTTTTCTTTATGTTTCTCAAGCTAGACATTCAATTATA-TTTGTTTTA
*
816 ACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTGTTAGATTATAAAACAATTTAAAACTAGT
128 ACCAAAAACGTAAAAAAATTCAACTTAAAATCAATT-TTAGATTATAAAAC-ATTTAAAACTAGT
*
881 AATAAGGCTTTTGAAGGAATCA-GTGACTATAAATTGACTTTTCTTGCCAATGAATGACTTTTTC
191 AATAAGGCTTTTGAAGGAAT-AGGTGACTAT-AATAGACTTTTCTTGCCAATGAATG-CTTTTTC
*
945 TTCATCTTTCTCAAGGTGGACATTCGATTATAGTCTGTTTTAACCAAAATGAAAAAAAATTCAAC
253 TTCATCTTTCTCAAGGTGGACATTCAATTATAGTCTGTTTTAACCAAAAT-AAAAAAAATTCAAC
* * *
1010 TTAAAATCAATTATCAGATTATAAAACAATTTAAAGCGAGTAATAAGG-TTTTTAAAGGAATGAG
317 TTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAA-GAATGAG
* * * * *
1074 TGACGATAAATGGACTTTTCTT-CTAAATGAATGGCTTTTTCCTCACATTTCTTGATGTAGGCAT
381 TGACGATAAATGAACTTTTCTTGC-AAATGAATGCCTTTTTCCTCACATTTCTTGAGGTAGACAA
* * * * * *
1138 TCAATTATAGT-TTGTTTTATCCACAAATGT-AAAAAAATTAAACTTAAAATCAATTATGAGATT
445 TCAATAAGAATCTT-TTTT-GCCAAAAATGTAAAAAAAATTAAACTTAAAATCAATTATGAGACT
* * *
1201 AAAAAACCGTTTAAAGCAAGTAAAAAGGCTTTT-AGAGGAATGGGTGACTACAAATGAACTTTTC
508 AAAAAACCATTTAAAGCAAGTAAAAAGACTTTTGA-AGAAATGGGTGACTA-AAATGAACTTTTC
* *
1265 TTGCCAATGAAAGCCTTTTTCTTTAAGTTTCTCAAAGTAGACATTGAATTA-TAGTCTGTTTTAA
571 TTGCCAATGAAAGCATTTTTCTTCAAGTTTCTCAAAGTAGACATTGAATTATTA-TCTGTTTTAA
*
1329 CTAAAAATGTAAAAAAAATTCAACTTAAAATCAATTATGAG
635 CCAAAAATGT-AAAAAAATTCAACTTAAAATCAATTATGAG
*
1370 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTT
1 ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTT
* * * *
1435 TCTTACAGATGAATGCTTGTTTCTTTATGTTTCTCAAGGTTGACATTGAATTATTATTTATTTTA
66 TCTTACA-ATGAATGCTT-TTTCTTTATGTTTCTCAAGCTAGACATTCAATTA-TATTTGTTTTA
** * * * ** * *
1500 ACCAAAAATATAAAAAAGTTCAGCTTCAAATCAATTATGGGAATATAAAATCATTT-AAAGTAAG
128 ACCAAAAACGTAAAAAAATTCAACTTAAAATCAATT-TTAGATTATAAAA-CATTTAAAACT-AG
* * * *
1564 TAATAAAGCTTTTGAAGGAATAGGTAACTATAATAGACTTTT-TTTCTCATTGAATGGCTTTTTC
190 TAATAAGGCTTTTGAAGGAATAGGTGACTATAATAGACTTTTCTTGC-CAATGAAT-GCTTTTTC
* * * * * **
1628 TACATGTTTCCCAAGGCAGG-CATTCAATTATAGTATGTTTTAATAAAAAATATAAAAAAATTCA
253 TTCATCTTTCTCAAGG-TGGACATTCAATTATAGTCTGTTTTAA-CCAAAATA-AAAAAAATTCA
* *
1692 A-TTCAAAATCATTTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGACTTTTGAA
315 ACTT-AAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAA
1750 NNNNNNNNNN
Statistics
Matches: 884, Mismatches: 150, Indels: 60
0.81 0.14 0.05
Matches are distributed among these distances:
681 1 0.00
682 75 0.08
683 273 0.31
684 401 0.45
685 134 0.15
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.35
Consensus pattern (674 bp):
ATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTT
TCTTACAATGAATGCTTTTTCTTTATGTTTCTCAAGCTAGACATTCAATTATATTTGTTTTAACC
AAAAACGTAAAAAAATTCAACTTAAAATCAATTTTAGATTATAAAACATTTAAAACTAGTAATAA
GGCTTTTGAAGGAATAGGTGACTATAATAGACTTTTCTTGCCAATGAATGCTTTTTCTTCATCTT
TCTCAAGGTGGACATTCAATTATAGTCTGTTTTAACCAAAATAAAAAAAATTCAACTTAAAATCA
ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGAGTGACGATAAA
TGAACTTTTCTTGCAAATGAATGCCTTTTTCCTCACATTTCTTGAGGTAGACAATCAATAAGAAT
CTTTTTTGCCAAAAATGTAAAAAAAATTAAACTTAAAATCAATTATGAGACTAAAAAACCATTTA
AAGCAAGTAAAAAGACTTTTGAAGAAATGGGTGACTAAAATGAACTTTTCTTGCCAATGAAAGCA
TTTTTCTTCAAGTTTCTCAAAGTAGACATTGAATTATTATCTGTTTTAACCAAAAATGTAAAAAA
ATTCAACTTAAAATCAATTATGAG
Done.