Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398970.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2252.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 639

Length: 1066
ACGTcount: A:0.24, C:0.13, G:0.12, T:0.20

Warning! 317 characters in sequence are not A, C, G, or T


Found at i:686 original size:35 final size:35

Alignment explanation


    Indices: 647--726  Score: 81
    Period size: 35  Copynumber: 2.3  Consensus size: 35

        637 TTGATCCTAG

                   *   *             *          
        647 GAAAAACTATTTTTGAAAGTTATGGTTGAGCCTT-T
          1 GAAAAACCATTGTTGAAAGTTATGGCTGAG-CTTGT

                 *           *   *             
        682 GAAAAGCCATTGTTGAAGGTTGTGGCTGAGCTTGT
          1 GAAAAACCATTGTTGAAAGTTATGGCTGAGCTTGT

                 *    
        717 GAAAAGCCAT
          1 GAAAAACCAT

        727 NNNNNNNNNN


Statistics
Matches: 38,  Mismatches: 6, Indels: 2
        0.83            0.13        0.04

Matches are distributed among these distances:
  34    3  0.08
  35   35  0.92

ACGTcount: A:0.30, C:0.11, G:0.26, T:0.33


Consensus pattern (35 bp):   
GAAAAACCATTGTTGAAAGTTATGGCTGAGCTTGT
Done.