Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018398991.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2271.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 629

Length: 1049
ACGTcount: A:0.22, C:0.04, G:0.03, T:0.30

Warning! 418 characters in sequence are not A, C, G, or T


Found at i:97 original size:18 final size:18

Alignment explanation


    Indices: 74--114  Score: 64
    Period size: 18  Copynumber: 2.3  Consensus size: 18

         64 ATAAACTCTA

                              
         74 TTTAATTTTATTCAAATT
          1 TTTAATTTTATTCAAATT

                     *  *     
         92 TTTAATTTTTTTTAAATT
          1 TTTAATTTTATTCAAATT

                 
        110 TTTAA
          1 TTTAA

        115 ATTTCTCTAC


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66


Consensus pattern (18 bp):   
TTTAATTTTATTCAAATT
Done.