Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397427.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_900.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19909
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.18

Warning! 10316 characters in sequence are not A, C, G, or T


Found at i:9865 original size:171 final size:159

Alignment explanation


    Indices: 9688--10173  Score: 381
    Period size: 171  Copynumber: 2.9  Consensus size: 159

       9678 NNNNNNNNNN

                     *             *                      *  **              
       9688 AATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCTTGTCATTGAATGC-TTTTGTC
          1 AATAAGGCTATTGAAGGAATGGGAGACTATAAATAGACTTTTCTTGCCAACGAATGCATTTT-TC

                              *                                        *     
       9752 TTCA-TGTTTCT-AGAGATAAACAGTCAATTAT-TATCTACTTTAATCAAAAATGTAAACAAATT
         65 TTCACT-TTTCTCA-AGACAAACAGTCAATTATATATCT--TTTAATCAAAAATGTAAAAAAATT

                 *                                       
       9814 CAACTTAAAATCAATTATTAGATTAGAAAANNNNNNNNNNNGAGT
        126 CAACTGAAAATCAATTATTAGATTAGAAAA-----------GAGT

                                     *                                       
       9859 AATAAGGCTATTGAAGGAATGGGAGGCTATAAATAGACTTTTCTTGCCAACGAATGCATTTTTCT
          1 AATAAGGCTATTGAAGGAATGGGAGACTATAAATAGACTTTTCTTGCCAACGAATGCATTTTTCT

                    *     *  *   *             *       *                     
       9924 TCACTTTTTTCAAGCCAGACATTCAATTATAGTATGTTTTAATGAAAAATGTAAAAAAATTCAAC
         66 TCACTTTTCTCAAGACAAACAGTCAATTATA-TATCTTTTAATCAAAAATGTAAAAAAATTCAAC

                                       *  * 
       9989 TGAAAATCAATTATTAGATTAGAAAACCATTT
        130 TGAAAATCAATTATTAGATTAGAAAA-GA-GT

                                  **            *                        *   
      10021 AA-AATGAG-TAATNNNNNNNNNNAAGGAATGGGAGGCTATAAATAGACTTTTCTTGCCAATGAA
          1 AATAA-G-GCT-AT--------TGAAGGAATGGGAGACTATAAATAGACTTTTCTTGCCAACGAA

                     *         *     *      *  *          *       *      *   
      10084 TGCATTTTTTTTCACTTTTTTCAAGGCAAACATTCTATTATAGTATGTTTTAATGAAAAATATAA
         55 TGCATTTTTCTTCACTTTTCTCAAGACAAACAGTCAATTATA-TATCTTTTAATCAAAAATGTAA

                        *            
      10149 AAAAATTCAACTTAAAATCAATTAT
        119 AAAAATTCAACTGAAAATCAATTAT

      10174 NNNNNNNNNN


Statistics
Matches: 271,  Mismatches: 27, Indels: 34
        0.82            0.08        0.10

Matches are distributed among these distances:
 161    3  0.01
 162    5  0.02
 163    3  0.01
 171  250  0.92
 172    6  0.02
 173    4  0.01

ACGTcount: A:0.37, C:0.11, G:0.13, T:0.34


Consensus pattern (159 bp):   
AATAAGGCTATTGAAGGAATGGGAGACTATAAATAGACTTTTCTTGCCAACGAATGCATTTTTCT
TCACTTTTCTCAAGACAAACAGTCAATTATATATCTTTTAATCAAAAATGTAAAAAAATTCAACT
GAAAATCAATTATTAGATTAGAAAAGAGT
Done.