Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399003.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2282.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 907

Length: 1513
ACGTcount: A:0.19, C:0.07, G:0.07, T:0.13

Warning! 808 characters in sequence are not A, C, G, or T


Found at i:828 original size:22 final size:24

Alignment explanation


    Indices: 800--857  Score: 68
    Period size: 22  Copynumber: 2.5  Consensus size: 24

        790 CGATATTCAG

                                    
        800 AAGAAGAAAAAGAAAT-AGAGAAA
          1 AAGAAGAAAAAGAAATCAGAGAAA

                   **               
        823 AA-AAGAGCAA-AAATCAGAGAAA
          1 AAGAAGAAAAAGAAATCAGAGAAA

                         
        845 AAGAAGGAAAAAG
          1 AAGAA-GAAAAAG

        858 GAAAACCCTC


Statistics
Matches: 27,  Mismatches: 4, Indels: 6
        0.73            0.11        0.16

Matches are distributed among these distances:
  21    4  0.15
  22   15  0.56
  23    4  0.15
  24    4  0.15

ACGTcount: A:0.71, C:0.03, G:0.22, T:0.03


Consensus pattern (24 bp):   
AAGAAGAAAAAGAAATCAGAGAAA
Done.