Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399005.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2285.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 606

Length: 1011
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.30

Warning! 179 characters in sequence are not A, C, G, or T


Found at i:939 original size:170 final size:169

Alignment explanation


    Indices: 511--1003  Score: 488
    Period size: 170  Copynumber: 2.9  Consensus size: 169

        501 CAATTAAGAT

                       * *               **     *                            
        511 ATTATAAAACCTTTTAAAGCGAGTAATAATACTTTTAAAGGAAT-TGGTGACTATAAATGGACTT
          1 ATTATAAAACCATGTAAAGCGAGTAATAAGGCTTTTGAA-GAATGT-GTGACTATAAATGGACTT

                  *   *    ***     *                *         *       *      
        575 TTCTTGTCAAGGAATATTTTTTTATTCATGTTTCTCAAGGAAGACATTCATTTATAGTTTGTTTT
         64 TTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTT

                                                   *  
        640 AACCAAAAATATGAAAAAATTCAAATGAAAATCAATTATCAG
        129 AACCAAAAATAT-AAAAAATTCAAATGAAAATCAATTATAAG

               *         *     *                     *                *      
        682 ATTGTAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGAGTGTGTGACTATAAATGAACTTTT
          1 ATTATAAAACCATGTAAAGCGAGTAATAAGGCTTTTGAAGAATGTGTGACTATAAATGGACTTTT

                 * * *                   *   *                    *          
        747 CTTGCTAGTAAATGCCTTTTTCTTCATGTCTCTTAAGGTAGACATTCAATTATAATCTGTTTTAA
         66 CTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAA

             *                    **         *       
        812 CTAAAAATATAAAAAACTTCAGCTTG-AAATCAGTTATAAG
        131 CCAAAAATATAAAAAA-TTCA-AATGAAAATCAATTATAAG

                                                          **********         
        852 ATTATAAAACCATGTAAAGCGAGTAATAAGGCTTTTGAAGGAATG-NNNNNNNNNNATGGACTTT
          1 ATTATAAAACCATGTAAAGCGAGTAATAAGGCTTTTGAA-GAATGTGTGACTATAAATGGACTTT

                            *        *         * *   *                       
        916 TCTTGCCAATGAATGCGTTTTTCTTAATGTTTCTCGATGTAAACATTCAATTATAGTCTGTTTTA
         65 TCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTA

                     *             
        981 ACCAAAAATGTAAAAACATTCAA
        130 ACCAAAAATATAAAAA-ATTCAA

       1004 CTTAAAAT


Statistics
Matches: 260,  Mismatches: 57, Indels: 12
        0.79            0.17        0.04

Matches are distributed among these distances:
 169    6  0.02
 170  213  0.82
 171   41  0.16

ACGTcount: A:0.36, C:0.12, G:0.14, T:0.36


Consensus pattern (169 bp):   
ATTATAAAACCATGTAAAGCGAGTAATAAGGCTTTTGAAGAATGTGTGACTATAAATGGACTTTT
CTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAA
CCAAAAATATAAAAAATTCAAATGAAAATCAATTATAAG
Done.