Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399007.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2287.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 691

Length: 1153
ACGTcount: A:0.30, C:0.12, G:0.11, T:0.28

Warning! 215 characters in sequence are not A, C, G, or T


Found at i:950 original size:171 final size:172

Alignment explanation


    Indices: 678--1050  Score: 436
    Period size: 171  Copynumber: 2.2  Consensus size: 172

        668 AAGTGGGTAA

                                    *        *                     *         
        678 TAAGGCTTTTGAAGGAATGAGAGATTATAAATGCACTCTTCTTGCCAATGAATGCTTTTTTCTTC
          1 TAAGGCTTTTGAAGGAATGAGAGACTATAAATGAACTCTTCTTGCCAATGAATGCCTTTTTCTTC

                   ***                   *          *                        
        743 ATGTTTCTTGAGGTGAACACTCAATTATAGTCTGTTTTAATAAAAAATAT-AAAAAAA-TATAAC
         66 ATGTTTCACAAGGTGAACACTCAATTATAATCTGTTTTAACAAAAAATATAAAAAAAATTA-AAC

                 *                                      
        806 TTAAATTC-AATTATGACATTATAAAACTTTTTAAAGCGAATAC
        130 TTAAAATCAAATT-TGACATTATAAAACTTTTTAAAGCGAATAC

                                  *               *       *       *          
        849 TAAGGCTTTTGAAGGAAT-AGGTGACTATAAATGAACTTTTCTTGCTAATGAATTCCTTTTTCTT
          1 TAAGGCTTTTGAAGGAATGA-GAGACTATAAATGAACTCTTCTTGCCAATGAATGCCTTTTTCTT

                                 *                  *  *      *              
        913 CATGTTTCACAAGGT-AGACATTCAATTATAATCTGTTTTGACCAAAAATTTAAAAAAAATTAAA
         65 CATGTTTCACAAGGTGA-ACACTCAATTATAATCTGTTTTAACAAAAAATATAAAAAAAATTAAA

                             *            *  *        *  *
        977 CTTAAAATCAAATTTGAGATTATAAAA-TCATTGAAAGTC-AGTAA
        129 CTTAAAATCAAATTTGACATTATAAAACT-TTTTAAAG-CGAATAC

                 *                        
       1021 TAAGGGTTTTGAAGGAATGAGAGACTATAA
          1 TAAGGCTTTTGAAGGAATGAGAGACTATAA

       1051 NNNNNNNNNN


Statistics
Matches: 170,  Mismatches: 24, Indels: 15
        0.81            0.11        0.07

Matches are distributed among these distances:
 170    2  0.01
 171   96  0.56
 172   64  0.38
 173    8  0.05

ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36


Consensus pattern (172 bp):   
TAAGGCTTTTGAAGGAATGAGAGACTATAAATGAACTCTTCTTGCCAATGAATGCCTTTTTCTTC
ATGTTTCACAAGGTGAACACTCAATTATAATCTGTTTTAACAAAAAATATAAAAAAAATTAAACT
TAAAATCAAATTTGACATTATAAAACTTTTTAAAGCGAATAC
Done.